Case 11 (XFP): Denmark/DCGC-692222/2025
| Target: 9 samples | Number of changes: 146 | |
| BC: LF.7.9 + A.2.5.1 + LF.7.9 | BC BR: 134-135, 136-137 | BC BR coord: 27810 - 27811, 28145 - 28146 |
| Direction L1: >> | Initial region span: 1-134,135-136,141-146 | Gap history (edge excluded): 134-141 -> 136-141 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.93e-02 | |
| Rec. model vs L1: 2.89e-16 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
LF.7.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.9 |
20 |
134 |
204.080142 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
116 |
203.689067 |
190.056827 |
-42.113654 |
5.829466e-05 |
* |
|
|
| XFJ.1 |
59 |
116 |
203.361657 |
194.696687 |
-51.393374 |
6.036083e-03 |
* |
|
|
| JN.1.4 |
8971 |
134 |
166.141072 |
176.399125 |
-14.798251 |
6.844436e-11 |
|
* |
|
| LF.7 |
58 |
134 |
153.506696 |
149.378940 |
39.242120 |
1.260958e-22 |
|
* |
|
| JN.1 |
17255 |
134 |
143.567535 |
152.644170 |
32.711659 |
3.301203e-21 |
|
* |
|
| LF.7.2.1 |
67 |
134 |
140.394377 |
147.541603 |
42.916795 |
2.002622e-23 |
|
* |
|
| LF.7.1 |
165 |
135 |
137.220118 |
144.581697 |
48.836606 |
1.037737e-24 |
|
* |
|
| LF.7.9.1 |
48 |
134 |
136.458760 |
132.349838 |
73.300323 |
5.066006e-30 |
|
* |
|
| LF.7.1.2 |
26 |
134 |
133.802412 |
129.762335 |
78.475331 |
3.800520e-31 |
|
* |
|
| |||||
A.2.5.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| A.2.5.1 |
25 |
136 |
8.760478 |
NaN |
NaN |
NaN |
* |
* |
* |
| A.2.5 |
513 |
136 |
6.835739 |
6.835739 |
-9.671479 |
0.145876 |
* |
* |
|
| B.1.1.149 |
55 |
135 |
5.220104 |
-4.779896 |
13.559792 |
0.000001 |
|
* |
|
| CH.1.1.9 |
97 |
135 |
5.220104 |
-4.779896 |
13.559792 |
0.000001 |
|
* |
|
| CH.1.1.13 |
145 |
135 |
5.213183 |
-4.786817 |
13.573633 |
0.000001 |
|
* |
|
| CH.1.1.14 |
88 |
135 |
5.197114 |
-4.802886 |
13.605771 |
0.000001 |
|
* |
|
| AY.62 |
1056 |
135 |
5.193231 |
-4.806769 |
13.613538 |
0.000001 |
|
* |
|
| BR.2.1 |
313 |
135 |
5.190928 |
-4.809072 |
13.618143 |
0.000001 |
|
* |
|
| NL.18 |
10 |
135 |
5.114743 |
-4.885257 |
13.770513 |
0.000001 |
|
* |
|
| MC.2 |
396 |
140 |
5.113976 |
2.501432 |
-1.002865 |
0.001911 |
* |
|
|
| |||||
LF.7.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.9 |
20 |
141 |
7.496435 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 4184_G|A, 4321_C|T, 4369_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C,
17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 11 (XFP): OZ285414
| Target: 9 samples | Number of changes: 151 | |
| BC: XFJ.1 + MC.2 | BC BR: 119-120 | BC BR coord: 25216 - 25217 |
| Direction L1: >> | Initial region span: 1-119,123-151 | Gap history (edge excluded): 119-123 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.89e-02 | |
| Rec. model vs L1: 1.18e-60 | Rec. model vs L2: 3.06e-139 | |
| Flags: Model_1BP_Best | | |
XFJ.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
119 |
181.384545 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9 |
20 |
137 |
177.626648 |
168.600273 |
-41.200547 |
2.802496e-06 |
|
|
|
| XFJ.3 |
14 |
119 |
168.317700 |
168.317700 |
-40.635400 |
2.118081e-06 |
|
* |
|
| JN.1 |
17255 |
137 |
148.474683 |
120.641301 |
54.717397 |
4.157016e-27 |
|
|
|
| JN.1.4 |
8971 |
137 |
146.200272 |
118.757915 |
58.484170 |
6.343195e-28 |
|
|
|
| PY.1 |
82 |
119 |
134.256585 |
134.256585 |
27.486830 |
3.401740e-21 |
|
* |
|
| LF.7 |
58 |
137 |
128.987966 |
119.573868 |
56.852265 |
1.433039e-27 |
|
|
|
| LF.7.9.3 |
20 |
107 |
128.180951 |
124.377896 |
47.244208 |
1.750020e-25 |
|
|
|
| KP.2.3 |
4440 |
137 |
120.509237 |
107.334479 |
81.331041 |
6.926177e-33 |
|
|
|
| JN.1.16.1 |
466 |
138 |
120.276038 |
110.810640 |
74.378720 |
2.237005e-31 |
|
|
|
| |||||
MC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.2 |
396 |
123 |
44.449423 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
121 |
35.668647 |
35.395693 |
-2.791385 |
2.650265e+04 |
* |
|
|
| JN.1.20 |
66 |
123 |
35.429427 |
16.191774 |
35.616452 |
1.209661e-04 |
* |
* |
|
| KP.3.1 |
1957 |
123 |
32.321589 |
13.083937 |
41.832127 |
5.422248e-06 |
|
* |
|
| MC.10 |
221 |
123 |
31.699491 |
12.461839 |
43.076322 |
2.902320e-06 |
|
* |
|
| KP.3 |
769 |
120 |
31.389966 |
31.389966 |
5.220068 |
4.829920e+02 |
* |
|
|
| MC.19 |
221 |
123 |
31.343269 |
12.105617 |
43.788767 |
2.035030e-06 |
|
* |
|
| NY.15 |
216 |
123 |
30.529708 |
-2.347172 |
72.694345 |
1.078985e-12 |
|
* |
|
| MC.16 |
917 |
123 |
29.278353 |
10.040700 |
47.918600 |
2.580790e-07 |
|
* |
|
| JN.1.46 |
308 |
121 |
28.922346 |
18.922346 |
30.155309 |
1.854760e-03 |
* |
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 4184_G|A, 4321_C|T, 4369_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14371_G|A, 14408_C|T, 15714_C|T, 15756_T|A, 15783_C|T,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28877_A|T, 28878_G|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 11 (XFP): USA/CA-GBW-GKISBBBE89075/2025
| Target: 9 samples | Number of changes: 149 | |
| BC: KP.2.28.1 + XFJ.1 | BC BR: 12-13 | BC BR coord: 5240 - 5241 |
| Direction L1: << | Initial region span: 1-8,13-149 | Gap history (edge excluded): 8-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.71e-02 | |
| Rec. model vs L1: 1.61e-129 | Rec. model vs L2: 2.57e-25 | |
| Flags: Model_1BP_Best | | |
KP.2.28.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.28.1 |
10 |
8 |
18.811150 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.1 |
659 |
11 |
17.020940 |
1.332105 |
27.335791 |
1.447735 |
* |
|
|
| LF.1.1.1 |
109 |
8 |
16.348047 |
-10.543103 |
51.086206 |
0.000010 |
* |
* |
|
| BA.2.86.1 |
1343 |
11 |
16.191494 |
6.191494 |
17.617013 |
186.792804 |
* |
|
|
| KP.3.1.1 |
12013 |
11 |
15.885304 |
5.885304 |
18.229391 |
137.689342 |
* |
|
|
| JN.1.31 |
204 |
8 |
15.720993 |
-2.132149 |
34.264297 |
0.045502 |
* |
* |
|
| KP.3.1 |
1957 |
8 |
15.233281 |
-2.623443 |
35.246886 |
0.027737 |
* |
* |
|
| KP.2.3 |
4440 |
11 |
13.894198 |
3.894198 |
22.211604 |
18.821503 |
* |
|
|
| JN.1.39 |
1007 |
11 |
10.874362 |
0.874362 |
28.251276 |
0.918512 |
* |
|
|
| MG.1 |
23 |
11 |
8.835060 |
-1.164940 |
32.329880 |
0.119433 |
* |
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
13 |
195.146903 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9 |
20 |
25 |
176.417928 |
172.803235 |
-21.606470 |
1.985461e-10 |
|
|
|
| XFJ.3 |
14 |
13 |
172.658536 |
172.658536 |
-21.317072 |
1.717468e-10 |
|
* |
|
| JN.1.4 |
8971 |
5 |
164.445377 |
152.584793 |
18.830415 |
3.284179e-19 |
|
|
|
| LF.7.1 |
165 |
25 |
155.105209 |
145.815757 |
32.368487 |
3.769235e-22 |
|
|
|
| PY.2 |
17 |
25 |
149.216202 |
136.978220 |
50.043560 |
5.486071e-26 |
|
|
|
| LF.7 |
58 |
25 |
144.019777 |
140.387692 |
43.224616 |
1.660373e-24 |
|
|
|
| LF.7.2.1 |
67 |
25 |
143.102115 |
139.487422 |
45.025155 |
6.716904e-25 |
|
|
|
| LF.7.6.2 |
17 |
25 |
136.675995 |
133.061302 |
57.877395 |
1.088497e-27 |
|
|
|
| PY.1 |
82 |
25 |
136.662298 |
124.114296 |
75.771407 |
1.419263e-31 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2172_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 4184_G|A, 4321_C|T, 4369_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 13427_G|A, 14408_C|T, 15714_C|T, 15756_T|A,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23230_C|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 11 (XFP): USA/MA-MASPHL-14151/2025
| Target: 9 samples | Number of changes: 154 | |
| BC: MC.11 + XFJ.1 | BC BR: 17-18 | BC BR coord: 5240 - 5241 |
| Direction L1: << | Initial region span: 1-11,18-154 | Gap history (edge excluded): 11-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.45e-02 | |
| Rec. model vs L1: 3.93e-154 | Rec. model vs L2: 2.20e-30 | |
| Flags: Model_1BP_Best | | |
MC.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.11 |
393 |
11 |
22.372168 |
NaN |
NaN |
NaN |
* |
* |
* |
| LB.1 |
1128 |
12 |
21.979768 |
-5.874261 |
49.748522 |
1.491317e+04 |
* |
* |
|
| LB.1.7.2 |
87 |
11 |
13.599679 |
-30.758253 |
99.516507 |
2.323549e-07 |
|
* |
|
| KP.2.8 |
51 |
6 |
13.418012 |
-26.240827 |
90.481654 |
2.133845e-05 |
* |
|
|
| JN.1.42.2 |
28 |
6 |
13.024106 |
-26.548115 |
91.096230 |
1.565062e-05 |
* |
|
|
| MC.10.1.7 |
11 |
6 |
12.932207 |
-31.500739 |
101.001478 |
1.108597e-07 |
|
|
|
| JN.1.30 |
57 |
12 |
12.876348 |
-14.976794 |
67.953588 |
1.665291e+00 |
* |
* |
|
| MH.1 |
51 |
6 |
12.808788 |
-26.808743 |
91.617486 |
1.206744e-05 |
* |
|
|
| JN.1.15 |
42 |
11 |
12.200034 |
-25.653108 |
89.306216 |
3.830232e-05 |
* |
* |
|
| KS.1.1.2 |
252 |
13 |
11.998422 |
-5.854720 |
49.709441 |
1.521444e+04 |
* |
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
18 |
180.312387 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9 |
20 |
30 |
176.417928 |
172.803235 |
-35.606470 |
5.503259e-04 |
* |
|
|
| XFJ.3 |
14 |
18 |
172.658536 |
172.658536 |
-35.317072 |
4.760441e-04 |
* |
* |
|
| JN.1.4 |
8971 |
15 |
151.567214 |
148.522050 |
12.955900 |
1.562350e-14 |
|
|
|
| JN.1 |
17255 |
18 |
141.621231 |
141.621231 |
26.757538 |
1.574514e-17 |
|
* |
|
| LF.7.1 |
165 |
30 |
140.788276 |
131.498824 |
47.002353 |
6.339957e-22 |
|
|
|
| LF.7.9.1 |
48 |
30 |
135.667219 |
123.429237 |
63.141525 |
1.983033e-25 |
|
|
|
| PY.2 |
17 |
30 |
134.235975 |
121.997992 |
66.004015 |
4.745574e-26 |
|
|
|
| LF.7 |
58 |
30 |
129.168167 |
125.536082 |
58.927836 |
1.627495e-24 |
|
|
|
| LF.7.2.1 |
67 |
30 |
128.107073 |
124.492380 |
61.015240 |
5.723768e-25 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2003_C|T, 2036_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 3924_C|T, 3964_A|G, 4184_G|A, 4321_C|T, 4369_T|C, 6183_A|G, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 16741_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 20796_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C,
29734_29759
Case 11 (XFP): USA/NJ-GBW-GKISBBBF09579/2025
| Target: 9 samples | Number of changes: 152 | |
| BC: MC.17.1 + XFJ.1 | BC BR: 17-18 | BC BR coord: 5240 - 5241 |
| Direction L1: << | Initial region span: 1-6,18-152 | Gap history (edge excluded): 6-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.65e-182 | Rec. model vs L2: 5.83e-26 | |
| Flags: Model_2BP_Bad_L1_opp | | |
MC.17.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.17.1 |
10 |
6 |
16.193570 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.2.5 |
93 |
6 |
13.633444 |
-41.161875 |
126.323750 |
2.035376e-08 |
|
* |
|
| MC.9 |
298 |
6 |
12.481026 |
-16.429015 |
76.858029 |
1.118787e+03 |
* |
* |
|
| MC.28.1.1 |
129 |
6 |
9.974781 |
-29.568854 |
103.137708 |
2.198456e-03 |
* |
* |
|
| KP.2.3 |
4440 |
6 |
9.784386 |
-10.767208 |
65.534415 |
3.228684e+05 |
* |
* |
|
| KP.3.1.1 |
12013 |
6 |
8.740606 |
-12.024975 |
68.049950 |
9.158291e+04 |
* |
* |
|
| JN.1 |
17255 |
6 |
6.960903 |
-6.647399 |
57.294798 |
1.987553e+07 |
* |
* |
|
| JN.1.4 |
8971 |
5 |
6.391498 |
-4.224472 |
52.448944 |
2.235174e+08 |
* |
* |
|
| BA.2.6 |
424 |
5 |
3.268319 |
-73.506090 |
191.012180 |
1.825533e-22 |
|
* |
|
| FL.2.3 |
614 |
3 |
2.883722 |
-74.648894 |
193.297789 |
5.809283e-23 |
|
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
18 |
188.148415 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9 |
20 |
30 |
183.528825 |
179.914132 |
-43.828264 |
2.652070e-04 |
* |
|
|
| XFJ.3 |
14 |
18 |
181.358668 |
181.358668 |
-46.717337 |
1.124969e-03 |
* |
* |
|
| JN.1.4 |
8971 |
9 |
165.815847 |
154.198007 |
7.603986 |
1.801782e-15 |
|
|
|
| LF.7.1 |
165 |
30 |
147.236797 |
137.947345 |
40.105310 |
1.571251e-22 |
|
|
|
| LF.7.9.1 |
48 |
30 |
142.102988 |
129.865006 |
56.269988 |
4.865709e-26 |
|
|
|
| PY.2 |
17 |
30 |
140.933038 |
128.695056 |
58.609887 |
1.510155e-26 |
|
|
|
| LF.7.9.3 |
20 |
30 |
139.066797 |
129.102994 |
57.794013 |
2.275529e-26 |
|
|
|
| LF.7 |
58 |
30 |
135.678767 |
132.046682 |
51.906635 |
4.304355e-25 |
|
|
|
| LF.7.2.1 |
67 |
30 |
134.709279 |
131.094586 |
53.810828 |
1.664671e-25 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 198_G|A, 241_C|T, 670_T|G, 897_C|A, 1636_G|C, 2135_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 4184_G|A, 4321_C|T, 4369_T|C, 5192_C|T, 6183_A|G, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C,
22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22991_A|G, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T,
25000_C|T, 25207_C|T, 25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 11 (XFP): USA/NY-GBW-GKISBBBE99208/2025
| Target: 9 samples | Number of changes: 151 | |
| BC: XFJ.1 + MC.13 | BC BR: 120-121 | BC BR coord: 25216 - 25217 |
| Direction L1: >> | Initial region span: 1-120,124-151 | Gap history (edge excluded): 120-124 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.32e-45 | Rec. model vs L2: 8.98e-170 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XFJ.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
120 |
207.715389 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
120 |
193.289360 |
193.289360 |
-106.578720 |
5.436284e-07 |
|
* |
|
| LF.7.9 |
20 |
138 |
189.949082 |
180.922708 |
-81.845416 |
2.318733e-12 |
|
|
|
| JN.1.4 |
8971 |
138 |
167.226103 |
139.783746 |
0.432507 |
3.150474e-30 |
|
|
|
| LF.7 |
58 |
138 |
158.650769 |
149.236671 |
-18.473342 |
4.003674e-26 |
|
|
|
| JN.1 |
17255 |
138 |
145.582746 |
117.749364 |
44.501271 |
8.485881e-40 |
|
|
|
| LF.7.2.1 |
67 |
138 |
145.143356 |
135.707994 |
8.584012 |
5.353352e-32 |
|
|
|
| KP.2.3 |
4440 |
138 |
141.800275 |
128.625518 |
22.748964 |
4.483833e-35 |
|
|
|
| LF.7.1 |
165 |
139 |
141.496991 |
131.908981 |
16.182039 |
1.197586e-33 |
|
|
|
| LF.7.1.2 |
26 |
138 |
139.200545 |
129.677247 |
20.645505 |
1.281323e-34 |
|
|
|
| |||||
MC.13 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.13 |
807 |
124 |
32.600488 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.7.5 |
427 |
122 |
31.495733 |
14.388791 |
41.222418 |
2.787095e+00 |
* |
|
|
| MC.2 |
396 |
124 |
31.383899 |
12.146246 |
45.707507 |
2.952302e-01 |
* |
* |
|
| KP.3.1 |
1957 |
124 |
28.117999 |
8.880347 |
52.239306 |
1.127689e-02 |
* |
* |
|
| KP.3.1.1 |
12013 |
122 |
26.714901 |
26.441947 |
17.116106 |
4.768704e+05 |
* |
|
|
| JN.1.42 |
494 |
124 |
23.359133 |
4.121480 |
61.757040 |
9.659341e-05 |
* |
* |
|
| LB.1.3.2 |
390 |
124 |
23.315157 |
-2.179318 |
74.358636 |
1.773749e-07 |
|
* |
|
| JN.1.4.5 |
1757 |
124 |
22.606494 |
3.368273 |
63.263454 |
4.562750e-05 |
* |
* |
|
| LB.1 |
1128 |
121 |
21.952824 |
21.952824 |
26.094351 |
5.377614e+03 |
* |
|
|
| JN.1.46 |
308 |
122 |
21.020620 |
11.020620 |
47.958761 |
9.584720e-02 |
* |
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2172_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 4184_G|A, 4321_C|T, 4369_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 13427_G|A, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C,
22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T,
25207_C|T, 25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759, 29789_29790
Case 11 (XFP): USA/NY-GBW-GKISBBBE99384/2025
| Target: 9 samples | Number of changes: 150 | |
| BC: XFJ.3 + MC.13 | BC BR: 119-120 | BC BR coord: 25216 - 25217 |
| Direction L1: >> | Initial region span: 1-119,123-150 | Gap history (edge excluded): 119-123 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.02e-47 | Rec. model vs L2: 2.13e-163 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XFJ.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.3 |
14 |
119 |
189.742002 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.1 |
59 |
119 |
189.367704 |
189.367704 |
-92.735408 |
6.907343e-01 |
* |
* |
|
| LF.7.9 |
20 |
137 |
186.401724 |
177.375350 |
-68.750700 |
4.265292e-06 |
|
|
|
| JN.1.4 |
8971 |
137 |
161.828990 |
134.386633 |
17.226734 |
9.112320e-25 |
|
|
|
| JN.1 |
17255 |
137 |
140.350729 |
112.517347 |
60.965305 |
2.894734e-34 |
|
|
|
| LF.7 |
58 |
137 |
140.286584 |
130.872487 |
24.255027 |
2.710715e-26 |
|
|
|
| KP.2.3 |
4440 |
137 |
134.856598 |
121.681841 |
42.636318 |
2.766416e-30 |
|
|
|
| LF.7.2.1 |
67 |
137 |
126.600956 |
117.165593 |
51.668814 |
3.027457e-32 |
|
|
|
| LF.7.9.3 |
20 |
137 |
125.528831 |
122.916078 |
40.167845 |
9.511987e-30 |
|
|
|
| LF.7.1 |
165 |
138 |
123.657091 |
114.069080 |
57.861840 |
1.370682e-33 |
|
|
|
| |||||
MC.13 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.13 |
807 |
123 |
32.600488 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.7.5 |
427 |
121 |
31.495733 |
14.388791 |
41.222418 |
2.787095e+00 |
* |
|
|
| MC.2 |
396 |
123 |
31.383899 |
12.146246 |
45.707507 |
2.952302e-01 |
* |
* |
|
| KP.3.1 |
1957 |
123 |
28.117999 |
8.880347 |
52.239306 |
1.127689e-02 |
* |
* |
|
| KP.3.1.1 |
12013 |
121 |
26.714901 |
26.441947 |
17.116106 |
4.768704e+05 |
* |
|
|
| JN.1.42 |
494 |
123 |
23.359133 |
4.121480 |
61.757040 |
9.659341e-05 |
* |
* |
|
| LB.1.3.2 |
390 |
123 |
23.315157 |
-2.179318 |
74.358636 |
1.773749e-07 |
|
* |
|
| JN.1.4.5 |
1757 |
123 |
22.606494 |
3.368273 |
63.263454 |
4.562750e-05 |
* |
* |
|
| LB.1 |
1128 |
120 |
21.952824 |
21.952824 |
26.094351 |
5.377614e+03 |
* |
|
|
| JN.1.46 |
308 |
121 |
21.020620 |
11.020620 |
47.958761 |
9.584720e-02 |
* |
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2172_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 4184_G|A, 4321_C|T, 4369_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21995_21997, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759, 29789_29790
Case 11 (XFP): USA/NY-GBW-GKISBBBF41177/2025
| Target: 9 samples | Number of changes: 150 | |
| BC: XFJ.3 + KP.3.1 | BC BR: 119-120 | BC BR coord: 25216 - 25217 |
| Direction L1: >> | Initial region span: 1-119,123-150 | Gap history (edge excluded): 119-123 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.95e-09 | |
| Rec. model vs L1: 3.48e-47 | Rec. model vs L2: 5.92e-98 | |
| Flags: Model_1BP_Best | | |
XFJ.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.3 |
14 |
119 |
180.460350 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.1 |
59 |
119 |
179.256731 |
179.256731 |
-64.513463 |
2.996920e-01 |
* |
* |
|
| LF.7.9 |
20 |
137 |
175.530838 |
166.504463 |
-39.008926 |
8.698022e-07 |
|
|
|
| JN.1.4 |
8971 |
138 |
154.716590 |
126.066787 |
41.866426 |
2.379861e-24 |
|
|
|
| JN.1 |
17255 |
137 |
146.673059 |
118.839678 |
56.320645 |
1.732902e-27 |
|
|
|
| LF.7.9.3 |
20 |
111 |
132.756853 |
124.934294 |
44.131412 |
7.687744e-25 |
|
|
|
| KP.2.3 |
4440 |
138 |
131.980467 |
118.341840 |
57.316320 |
1.051058e-27 |
|
|
|
| LF.7 |
58 |
137 |
128.850800 |
119.436702 |
55.126596 |
3.141805e-27 |
|
|
|
| LF.7.9.1 |
48 |
111 |
117.731415 |
109.908855 |
74.182289 |
2.293635e-31 |
|
|
|
| JN.1.16.1 |
466 |
137 |
116.962133 |
107.671266 |
78.657468 |
2.441769e-32 |
|
|
|
| |||||
KP.3.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1 |
1957 |
123 |
38.014816 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
121 |
35.490289 |
35.217335 |
-4.434669 |
1.379753e+07 |
* |
|
|
| LB.1 |
1128 |
120 |
35.345047 |
35.345047 |
-4.690094 |
1.571302e+07 |
* |
|
|
| MC.6 |
366 |
123 |
32.529829 |
13.292177 |
39.415647 |
4.148535e-03 |
* |
* |
|
| JN.1.7.5 |
427 |
121 |
31.495733 |
14.388791 |
37.222418 |
1.246289e-02 |
* |
|
|
| MC.2 |
396 |
123 |
31.383899 |
12.146246 |
41.707507 |
1.320163e-03 |
* |
* |
|
| JN.1.4 |
8971 |
123 |
28.351818 |
27.105650 |
11.788700 |
4.146418e+03 |
* |
* |
|
| KP.2 |
1589 |
123 |
27.806551 |
8.568899 |
48.862202 |
3.698493e-05 |
* |
* |
|
| KP.2.3 |
4440 |
123 |
27.553370 |
11.997640 |
42.004721 |
1.141970e-03 |
* |
* |
|
| JN.1 |
17255 |
123 |
24.788840 |
24.026217 |
17.947565 |
1.905663e+02 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 4184_G|A, 4321_C|T, 4369_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10260_A|G, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 13944_C|T, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23896_C|T, 23933_A|G, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25494_G|A,
25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
27916_G|T, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 11 (XFP): IGS-10285-CVDP-7DC538F8-A098-480C-A770-7BD46A9127F9
| Target: 9 samples | Number of changes: 153 | |
| BC: JN.1.48 + XFJ.1 | BC BR: 14-15 | BC BR coord: 5240 - 5241 |
| Direction L1: << | Initial region span: 1-8,18-153 | Gap history (edge excluded): 8-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.71e-02 | |
| Rec. model vs L1: 2.36e-104 | Rec. model vs L2: 2.57e-25 | |
| Flags: Model_1BP_Best | | |
JN.1.48 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.48 |
10 |
8 |
19.331200 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.2 |
1334 |
8 |
19.153903 |
-9.116624 |
48.233249 |
1.214897e+04 |
* |
* |
|
| JN.1.11.1 |
226 |
8 |
17.701017 |
-20.165488 |
70.330976 |
1.930126e-01 |
* |
* |
|
| LF.1.1.1 |
109 |
8 |
17.561244 |
-29.329905 |
88.659811 |
2.019652e-05 |
* |
* |
|
| KP.2 |
1589 |
9 |
17.523915 |
-10.334275 |
50.668550 |
3.586744e+03 |
* |
* |
|
| LB.1.3 |
778 |
9 |
16.123190 |
-11.732524 |
53.465048 |
8.844801e+02 |
* |
* |
|
| JN.1 |
17255 |
12 |
14.074274 |
3.940983 |
22.118035 |
5.678767e+09 |
* |
|
|
| KP.3.1 |
1957 |
8 |
13.961572 |
-23.895152 |
77.790304 |
4.630919e-03 |
* |
* |
|
| KP.2.3 |
4440 |
8 |
13.190259 |
-5.460208 |
40.920415 |
4.697707e+05 |
* |
* |
|
| KP.3.1.1 |
12013 |
8 |
12.183771 |
-15.791870 |
61.583740 |
1.533289e+01 |
* |
* |
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
18 |
176.702596 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9 |
20 |
29 |
176.417928 |
152.803235 |
8.393530 |
5.503259e-04 |
* |
|
|
| XFJ.3 |
14 |
18 |
169.048745 |
152.658536 |
8.682928 |
4.760441e-04 |
* |
* |
|
| JN.1.4 |
8971 |
18 |
156.153465 |
139.759683 |
34.480634 |
1.189182e-09 |
|
* |
|
| LF.7.1 |
165 |
29 |
140.788276 |
111.498824 |
91.002353 |
6.339957e-22 |
|
|
|
| LF.7.9.1 |
48 |
29 |
135.667219 |
103.429237 |
107.141525 |
1.983033e-25 |
|
|
|
| PY.2 |
17 |
29 |
134.235975 |
101.997992 |
110.004015 |
4.745574e-26 |
|
|
|
| LF.7 |
58 |
29 |
129.168167 |
105.536082 |
102.927836 |
1.627495e-24 |
|
|
|
| JN.1 |
17255 |
18 |
128.113898 |
122.305365 |
69.389270 |
3.123476e-17 |
|
* |
|
| LF.7.2.1 |
67 |
29 |
128.107073 |
104.492380 |
105.015240 |
5.723768e-25 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2745_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3784_C|T, 3785_T|C, 4184_G|A, 4321_C|T, 4369_T|C, 4618_C|T, 6183_A|G, 6885_G|T, 7358_A|G, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10954_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18177_T|C, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20384_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24990_C|T, 25000_C|T, 25207_C|T, 25494_G|A, 25584_C|T, 25599_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28093_C|T, 28144_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29466_C|T, 29510_A|C, 29734_29759
Case 25 (XDY): USA/NY-PRL-250401_81E07/2025
| Target: 220 samples | Number of changes: 139 | |
| BC: XDY.6 + CK.2 | BC BR: 134-135 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-134,135-139 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.18e-22 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XDY.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XDY.6 |
11 |
134 |
237.235060 |
NaN |
NaN |
NaN |
* |
* |
* |
| XDY.5 |
17 |
134 |
237.107812 |
237.107812 |
-176.215624 |
8.824969e-01 |
* |
* |
|
| XDY.7 |
10 |
134 |
229.329634 |
229.329634 |
-160.659269 |
3.688944e-04 |
* |
* |
|
| LB.1.2.1 |
155 |
134 |
227.886172 |
227.886172 |
-157.772344 |
8.696542e-05 |
* |
* |
|
| XDY.3 |
16 |
134 |
207.303742 |
207.303742 |
-116.607483 |
1.003613e-13 |
|
* |
|
| LB.1.1 |
52 |
134 |
198.644565 |
198.644565 |
-99.289130 |
1.740107e-17 |
|
* |
|
| KP.2 |
1589 |
134 |
194.385261 |
194.385261 |
-90.770521 |
2.457432e-19 |
|
* |
|
| LB.1.3 |
778 |
134 |
191.696262 |
191.696262 |
-85.392523 |
1.668128e-20 |
|
* |
|
| KP.3.2 |
737 |
134 |
189.475062 |
189.475062 |
-80.950123 |
1.811739e-21 |
|
* |
|
| LB.1.2 |
199 |
134 |
189.410463 |
189.410463 |
-80.820926 |
1.697721e-21 |
|
* |
|
| |||||
CK.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| CK.2 |
112 |
135 |
13.286246 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.2.4 |
444 |
135 |
7.789327 |
7.789327 |
-5.578654 |
4.107256e-03 |
* |
* |
|
| BV.1 |
84 |
137 |
6.868162 |
-13.131838 |
36.263675 |
3.373737e-12 |
|
|
|
| KP.3.2.3 |
759 |
136 |
6.782703 |
6.535354 |
-3.070709 |
1.170880e-03 |
* |
* |
|
| LF.7.1.6 |
14 |
137 |
6.514966 |
-13.485034 |
36.970069 |
2.365575e-12 |
|
|
|
| BQ.1.25 |
479 |
136 |
6.009363 |
-3.990637 |
17.981274 |
3.144581e-08 |
|
* |
|
| XBB.1.5.89 |
23 |
137 |
5.870399 |
-14.129601 |
38.259203 |
1.241129e-12 |
|
|
|
| BF.15 |
143 |
137 |
5.863296 |
-14.136704 |
38.273409 |
1.234938e-12 |
|
|
|
| PD.2.1 |
10 |
137 |
5.619294 |
-14.380706 |
38.761412 |
9.665919e-13 |
|
|
|
| CM.10 |
43 |
137 |
5.449335 |
-14.550665 |
39.101330 |
8.154796e-13 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5284_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T,
10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19669_G|A,
19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21633_21641, 21653_21655, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22111_G|T,
22131_G|C, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22332_G|T, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A,
22786_A|C, 22813_G|T, 22858_C|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24700_C|T, 24872_G|T, 24990_C|T, 25000_C|T, 25081_T|C, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29284_C|T, 29383_G|A, 29466_C|T,
29510_A|C, 29734_29759
Case 46 (XFJ): OZ262381
| Target: 24 samples | Number of changes: 146 | |
| BC: JN.1.53 + XFJ.1 | BC BR: 11-12 | BC BR coord: 4839 - 4840 |
| Direction L1: << | Initial region span: 1-9,12-146 | Gap history (edge excluded): 9-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.13e-02 | |
| Rec. model vs L1: 1.29e-158 | Rec. model vs L2: 3.31e-16 | |
| Flags: Model_1BP_Best | | |
JN.1.53 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.53 |
62 |
9 |
15.728510 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9.3 |
20 |
5 |
11.825673 |
5.189982 |
25.620036 |
1.246501e-04 |
* |
|
|
| XFB.3 |
56 |
5 |
11.670112 |
4.885385 |
26.229230 |
9.188250e-05 |
* |
|
|
| XEL.5 |
19 |
5 |
11.593891 |
-15.870858 |
67.741715 |
8.901246e-14 |
|
|
|
| LC.1 |
10 |
5 |
11.297148 |
-2.806209 |
41.612418 |
4.202505e-08 |
|
|
|
| XEC.35.1 |
28 |
5 |
11.252812 |
-1.779095 |
39.558190 |
1.171278e-07 |
|
|
|
| LF.7.1.11 |
20 |
5 |
11.163617 |
-8.501504 |
53.003008 |
1.413192e-10 |
|
|
|
| XEC.4.7 |
13 |
5 |
11.141517 |
-1.741355 |
39.482709 |
1.219079e-07 |
|
|
|
| KP.2.3 |
4440 |
9 |
11.116294 |
9.606882 |
16.786236 |
1.030630e-02 |
* |
* |
|
| XEC.23 |
142 |
5 |
11.050090 |
-1.999132 |
39.998263 |
9.399728e-08 |
|
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
12 |
309.884615 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
12 |
289.265270 |
283.628835 |
-263.257669 |
3.959117e-12 |
|
* |
|
| LF.7.9 |
20 |
7 |
259.623071 |
256.376545 |
-208.753090 |
5.766367e-24 |
|
|
|
| LF.7.2.1 |
67 |
7 |
196.506412 |
193.350209 |
-82.700418 |
2.451842e-51 |
|
|
|
| LF.7.9.3 |
20 |
29 |
191.091612 |
185.303736 |
-66.607472 |
7.863094e-55 |
|
|
|
| PC.3 |
42 |
7 |
188.249405 |
185.108240 |
-66.216481 |
6.470026e-55 |
|
|
|
| LF.7.9.1 |
48 |
29 |
185.630105 |
177.546997 |
-51.093994 |
3.353268e-58 |
|
|
|
| PY.2 |
17 |
29 |
185.498143 |
177.436089 |
-50.872177 |
3.003972e-58 |
|
|
|
| LF.7 |
58 |
7 |
183.108050 |
179.931167 |
-55.862333 |
3.641335e-57 |
|
|
|
| PC.3.1 |
27 |
7 |
180.683815 |
177.542650 |
-51.085300 |
3.353268e-58 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2308_T|C, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11812_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T, 27810_T|C,
28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 46 (XFJ): OZ276211
| Target: 24 samples | Number of changes: 147 | |
| BC: LP.8.1 + XFJ.1 | BC BR: 12-13 | BC BR coord: 4839 - 4840 |
| Direction L1: << | Initial region span: 1-6,13-147 | Gap history (edge excluded): 6-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.83e-02 | |
| Rec. model vs L1: 2.11e-186 | Rec. model vs L2: 2.67e-06 | |
| Flags: Model_1BP_Best | | |
LP.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1 |
1124 |
6 |
12.349269 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9.3 |
20 |
5 |
11.825673 |
-4.810018 |
53.620036 |
2.328374e-02 |
* |
* |
|
| XFB.3 |
56 |
5 |
11.670112 |
-5.114615 |
54.229230 |
1.716299e-02 |
* |
* |
|
| XEL.5 |
19 |
5 |
11.593891 |
-25.870858 |
95.741715 |
1.662689e-11 |
|
* |
|
| LC.1 |
10 |
5 |
11.297148 |
-12.806209 |
69.612418 |
7.849977e-06 |
|
* |
|
| XEC.35.1 |
28 |
5 |
11.252812 |
-11.779095 |
67.558190 |
2.187863e-05 |
* |
* |
|
| LF.7.1.11 |
20 |
5 |
11.163617 |
-18.501504 |
81.003008 |
2.639741e-08 |
|
* |
|
| XEC.4.7 |
13 |
5 |
11.141517 |
-11.741355 |
67.482709 |
2.277152e-05 |
* |
* |
|
| XEC.23 |
142 |
5 |
11.050090 |
-11.999132 |
67.998263 |
1.755802e-05 |
* |
* |
|
| LD.1.1 |
11 |
5 |
10.972996 |
-24.599596 |
93.199192 |
5.920590e-11 |
|
* |
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
13 |
309.884615 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
13 |
289.265270 |
283.628835 |
-263.257669 |
3.959117e-12 |
|
* |
|
| LF.7.9 |
20 |
8 |
259.623071 |
256.376545 |
-208.753090 |
5.766367e-24 |
|
|
|
| LF.7.2.1 |
67 |
8 |
196.506412 |
193.350209 |
-82.700418 |
2.451842e-51 |
|
|
|
| LF.7.9.3 |
20 |
30 |
191.091612 |
185.303736 |
-66.607472 |
7.863094e-55 |
|
|
|
| PC.3 |
42 |
8 |
188.249405 |
185.108240 |
-66.216481 |
6.470026e-55 |
|
|
|
| LF.7.9.1 |
48 |
30 |
185.630105 |
177.546997 |
-51.093994 |
3.353268e-58 |
|
|
|
| PY.2 |
17 |
30 |
185.498143 |
177.436089 |
-50.872177 |
3.003972e-58 |
|
|
|
| LF.7 |
58 |
8 |
183.108050 |
179.931167 |
-55.862333 |
3.641335e-57 |
|
|
|
| PC.3.1 |
27 |
8 |
180.683815 |
177.542650 |
-51.085300 |
3.353268e-58 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1173_T|C, 2308_T|C, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11812_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T,
27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 46 (XFJ): OZ276211
| Target: 24 samples | Number of changes: 147 | |
| BC: LP.8.1 + XFJ.1 | BC BR: 12-13 | BC BR coord: 4839 - 4840 |
| Direction L1: << | Initial region span: 1-6,13-147 | Gap history (edge excluded): 6-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.83e-02 | |
| Rec. model vs L1: 2.11e-186 | Rec. model vs L2: 2.67e-06 | |
| Flags: Model_1BP_Best | | |
LP.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1 |
1124 |
6 |
12.349269 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9.3 |
20 |
5 |
11.825673 |
-4.810018 |
53.620036 |
2.328374e-02 |
* |
* |
|
| XFB.3 |
56 |
5 |
11.670112 |
-5.114615 |
54.229230 |
1.716299e-02 |
* |
* |
|
| XEL.5 |
19 |
5 |
11.593891 |
-25.870858 |
95.741715 |
1.662689e-11 |
|
* |
|
| LC.1 |
10 |
5 |
11.297148 |
-12.806209 |
69.612418 |
7.849977e-06 |
|
* |
|
| XEC.35.1 |
28 |
5 |
11.252812 |
-11.779095 |
67.558190 |
2.187863e-05 |
* |
* |
|
| LF.7.1.11 |
20 |
5 |
11.163617 |
-18.501504 |
81.003008 |
2.639741e-08 |
|
* |
|
| XEC.4.7 |
13 |
5 |
11.141517 |
-11.741355 |
67.482709 |
2.277152e-05 |
* |
* |
|
| XEC.23 |
142 |
5 |
11.050090 |
-11.999132 |
67.998263 |
1.755802e-05 |
* |
* |
|
| LD.1.1 |
11 |
5 |
10.972996 |
-24.599596 |
93.199192 |
5.920590e-11 |
|
* |
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
13 |
309.884615 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
13 |
289.265270 |
283.628835 |
-263.257669 |
3.959117e-12 |
|
* |
|
| LF.7.9 |
20 |
8 |
259.623071 |
256.376545 |
-208.753090 |
5.766367e-24 |
|
|
|
| LF.7.2.1 |
67 |
8 |
196.506412 |
193.350209 |
-82.700418 |
2.451842e-51 |
|
|
|
| LF.7.9.3 |
20 |
30 |
191.091612 |
185.303736 |
-66.607472 |
7.863094e-55 |
|
|
|
| PC.3 |
42 |
8 |
188.249405 |
185.108240 |
-66.216481 |
6.470026e-55 |
|
|
|
| LF.7.9.1 |
48 |
30 |
185.630105 |
177.546997 |
-51.093994 |
3.353268e-58 |
|
|
|
| PY.2 |
17 |
30 |
185.498143 |
177.436089 |
-50.872177 |
3.003972e-58 |
|
|
|
| LF.7 |
58 |
8 |
183.108050 |
179.931167 |
-55.862333 |
3.641335e-57 |
|
|
|
| PC.3.1 |
27 |
8 |
180.683815 |
177.542650 |
-51.085300 |
3.353268e-58 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1173_T|C, 2308_T|C, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11812_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T,
27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 46 (XFJ): OZ280587
| Target: 24 samples | Number of changes: 144 | |
| BC: JN.1.8.1 + XFJ.1 | BC BR: 11-12 | BC BR coord: 4839 - 4840 |
| Direction L1: << | Initial region span: 1-11,12-144 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.19e-05 | |
| Rec. model vs L1: 4.87e-121 | Rec. model vs L2: 3.58e-21 | |
| Flags: Model_1BP_Best | | |
JN.1.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.8.1 |
1498 |
11 |
18.509376 |
NaN |
NaN |
NaN |
* |
* |
* |
| XDY.3 |
16 |
8 |
17.874592 |
10.021450 |
3.957100 |
2.055133e-04 |
* |
|
|
| MC.11.3 |
19 |
8 |
17.009594 |
9.156452 |
5.687095 |
8.653168e-05 |
* |
|
|
| MC.24.1 |
25 |
8 |
16.694335 |
8.841193 |
6.317613 |
6.314986e-05 |
* |
|
|
| KP.3.7 |
29 |
8 |
16.407356 |
8.554214 |
6.891573 |
4.748959e-05 |
* |
|
|
| LQ.1.2 |
32 |
8 |
16.325319 |
8.472177 |
7.055646 |
4.361977e-05 |
* |
|
|
| KP.2.11 |
40 |
8 |
16.161874 |
8.308732 |
7.382535 |
3.717032e-05 |
* |
|
|
| JN.1.50.1 |
48 |
8 |
16.040725 |
2.458124 |
19.083752 |
1.070468e-07 |
|
|
|
| JN.10 |
47 |
8 |
16.037928 |
8.184786 |
7.630429 |
3.280269e-05 |
* |
|
|
| KP.2.1 |
47 |
8 |
15.952397 |
8.077749 |
7.844503 |
2.953307e-05 |
* |
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
12 |
292.083200 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
12 |
285.078963 |
279.442528 |
-246.885056 |
3.239797e-06 |
|
* |
|
| LF.7.9 |
20 |
3 |
243.082377 |
238.009337 |
-164.018673 |
3.277373e-24 |
|
|
|
| LF.7.2.1 |
67 |
3 |
181.001759 |
175.930259 |
-39.860518 |
3.585291e-51 |
|
|
|
| PC.3 |
42 |
10 |
169.389947 |
167.243089 |
-22.486178 |
6.062851e-55 |
|
|
|
| LF.7 |
58 |
3 |
167.259247 |
162.151348 |
-12.302696 |
3.714895e-57 |
|
|
|
| LF.7.1 |
165 |
3 |
167.247168 |
146.263393 |
19.473214 |
4.690063e-64 |
|
|
|
| PC.4 |
10 |
3 |
166.103443 |
160.925043 |
-9.850086 |
1.091279e-57 |
|
|
|
| LF.7.9.3 |
20 |
3 |
164.047104 |
159.091847 |
-6.183695 |
1.741828e-58 |
|
|
|
| PY.1 |
82 |
12 |
161.490050 |
161.490050 |
-10.980101 |
1.920048e-57 |
|
* |
|
|
Target sequence
, 241_C|T, 519_524, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3876_C|T, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11893_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C,
17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21610_.|ATGCCGCTGTTT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23063_A|T, 23075_T|C, 23156_A|G, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25844_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C
Case 46 (XFJ): USA/CA-CDPH-6000021782/2025
| Target: 24 samples | Number of changes: 146 | |
| BC: LP.8.1 + XFJ.1 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,7-146 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.50e-192 | Rec. model vs L2: 1.55e-06 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LP.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1 |
1124 |
4 |
7.743010 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.2 |
396 |
4 |
7.408891 |
7.408891 |
-4.817781 |
7.153381e-01 |
* |
* |
|
| NY.13 |
463 |
4 |
7.221759 |
7.221759 |
-4.443517 |
5.915554e-01 |
* |
* |
|
| KP.3 |
769 |
4 |
6.727092 |
6.727092 |
-3.454184 |
3.605949e-01 |
* |
* |
|
| XBB.1.32 |
20 |
3 |
6.598157 |
-3.401843 |
16.803687 |
1.444734e-05 |
* |
* |
|
| BA.5.2.44 |
120 |
3 |
5.006053 |
-4.993947 |
19.987895 |
2.931489e-06 |
|
* |
|
| BU.3 |
122 |
3 |
4.981293 |
-5.018707 |
20.037414 |
2.859110e-06 |
|
* |
|
| BT.2 |
227 |
3 |
4.355290 |
-5.644710 |
21.289419 |
1.530372e-06 |
|
* |
|
| BA.5.1.25 |
1675 |
3 |
4.146734 |
-5.853266 |
21.706533 |
1.240495e-06 |
|
* |
|
| BN.1.7 |
382 |
3 |
3.848124 |
-6.151876 |
22.303753 |
9.235878e-07 |
|
* |
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
7 |
302.669687 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
7 |
290.757786 |
270.757786 |
-213.515571 |
6.722839e-06 |
|
* |
|
| LF.7.9 |
20 |
7 |
250.882577 |
230.882577 |
-133.765154 |
3.236386e-23 |
|
* |
|
| LF.7.2.1 |
67 |
7 |
189.402513 |
169.402513 |
-10.805027 |
6.451126e-50 |
|
* |
|
| PC.3 |
42 |
7 |
180.669337 |
151.943580 |
24.112839 |
1.685986e-57 |
|
* |
|
| LF.7 |
58 |
7 |
175.624961 |
155.624961 |
16.750078 |
6.684325e-56 |
|
* |
|
| PC.4 |
10 |
7 |
174.442640 |
154.442640 |
19.114720 |
2.053951e-56 |
|
* |
|
| PC.3.1 |
27 |
7 |
171.865144 |
143.153030 |
41.693940 |
2.566879e-61 |
|
* |
|
| LF.7.9.1 |
48 |
7 |
168.444888 |
139.395996 |
49.208009 |
5.976654e-63 |
|
* |
|
| PY.2 |
17 |
7 |
167.291545 |
130.504058 |
66.991884 |
8.233418e-67 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 709_G|T, 897_C|A, 1042_G|A, 1919_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C,
17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20470_C|A, 20799_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|A, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27768_27772, 27807_C|T,
27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C
Case 46 (XFJ): USA/CA-LACPHL-AY11911/2025
| Target: 24 samples | Number of changes: 149 | |
| BC: JN.1 + XFJ.1 | BC BR: 29-30 | BC BR coord: 12771 - 12772 |
| Direction L1: << | Initial region span: 1-29,30-149 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.97e-15 | |
| Rec. model vs L1: 5.60e-82 | Rec. model vs L2: 5.00e-29 | |
| Flags: Model_1BP_Best | | |
JN.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
29 |
36.851243 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
29 |
33.928911 |
33.928911 |
-3.857822 |
5.393369e-02 |
* |
* |
|
| KP.3.1.1 |
12013 |
29 |
22.001203 |
16.667411 |
30.665177 |
1.713034e-09 |
|
* |
|
| MC.13 |
807 |
26 |
21.562333 |
10.652758 |
42.694485 |
4.203936e-12 |
|
|
|
| JN.1.16.1 |
466 |
24 |
16.808532 |
4.776861 |
54.446278 |
1.174910e-14 |
|
|
|
| JN.1.7 |
1974 |
24 |
15.175852 |
3.106624 |
57.786753 |
2.211733e-15 |
|
|
|
| MC.19 |
221 |
24 |
13.940467 |
-3.367814 |
70.735628 |
3.409384e-18 |
|
|
|
| KP.2 |
1589 |
24 |
12.301415 |
10.802039 |
42.395921 |
4.859916e-12 |
|
|
|
| KP.3.3 |
1715 |
24 |
11.826561 |
11.386676 |
41.226649 |
8.723505e-12 |
|
|
|
| KP.1.1.1 |
578 |
24 |
11.276705 |
-0.737140 |
65.474279 |
4.753811e-17 |
|
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
30 |
267.083694 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
6 |
246.814578 |
238.860040 |
-211.720079 |
5.521261e-13 |
|
|
|
| LF.7.9 |
20 |
28 |
223.053004 |
218.611015 |
-171.222030 |
8.862882e-22 |
|
|
|
| LF.7.2.1 |
67 |
28 |
160.026668 |
155.599717 |
-45.199433 |
3.825425e-49 |
|
|
|
| JN.1.4 |
8971 |
4 |
159.058345 |
120.094623 |
25.810754 |
1.455640e-64 |
|
|
|
| LF.7.9.3 |
20 |
28 |
158.329306 |
153.887317 |
-41.774634 |
6.884377e-50 |
|
|
|
| LF.7.9.1 |
48 |
28 |
152.867799 |
148.425810 |
-30.851619 |
2.928308e-52 |
|
|
|
| PY.2 |
17 |
28 |
152.735837 |
148.293848 |
-30.587696 |
2.571334e-52 |
|
|
|
| PC.3 |
42 |
28 |
151.784699 |
147.342710 |
-28.685420 |
9.944403e-53 |
|
|
|
| LF.7.1 |
165 |
28 |
148.980463 |
144.556823 |
-23.113646 |
6.107973e-54 |
|
|
|
|
Target sequence
, 222, 241_C|T, 670_T|G, 897_C|A, 1158_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7482_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10681_C|T, 11042_G|T, 11094_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|G, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 25844_C|T, 25919_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A,
27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29690_G|T, 29734_29759
Case 46 (XFJ): USA/MA-MASPHL-14074/2025
| Target: 24 samples | Number of changes: 150 | |
| BC: JN.1 + XFJ.1 | BC BR: 5-6 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-5,7-150 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.72e-59 | Rec. model vs L2: 1.13e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
5 |
2.994024 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.4 |
10442 |
4 |
1.503026 |
-12.358458 |
36.716916 |
2.144906e-07 |
|
* |
|
| BA.4.6 |
19369 |
4 |
0.776654 |
-13.122193 |
38.244386 |
1.003100e-07 |
|
* |
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
7 |
280.438942 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
7 |
275.318741 |
265.318741 |
-200.637483 |
5.976023e-03 |
* |
* |
|
| LF.7.9 |
20 |
7 |
245.718955 |
235.718955 |
-141.437910 |
8.342488e-16 |
|
* |
|
| PC.3 |
42 |
7 |
174.780514 |
156.054758 |
17.890485 |
2.104872e-50 |
|
* |
|
| LF.7.2.1 |
67 |
7 |
173.494668 |
163.494668 |
3.010665 |
3.584071e-47 |
|
* |
|
| LF.7.9.1 |
48 |
22 |
166.461577 |
143.507920 |
42.984160 |
7.498966e-56 |
|
|
|
| LF.7 |
58 |
7 |
159.967518 |
149.967518 |
30.064964 |
4.792297e-53 |
|
* |
|
| PC.4 |
10 |
7 |
158.792875 |
148.792875 |
32.414250 |
1.479952e-53 |
|
* |
|
| LF.7.1 |
165 |
7 |
158.231093 |
148.231093 |
33.537813 |
8.411460e-54 |
|
* |
|
| PC.3.1 |
27 |
7 |
156.272177 |
137.560064 |
54.879872 |
1.954111e-58 |
|
* |
|
|
Target sequence
, 241_C|T, 492_C|T, 580_T|C, 670_T|G, 897_C|A, 1851_T|C, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 9907_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12253_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18129_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C,
22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A,
27807_C|T, 27810_T|C, 27970_C|T, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29700_A|G, 29734_29759
Case 46 (XFJ): IGS-10285-CVDP-2AAB5C9E-0709-4787-8906-A3F7486EE388
| Target: 24 samples | Number of changes: 148 | |
| BC: XFJ.1 + LF.7 + XFJ.1 | BC BR: 9-10, 13-14 | BC BR coord: 4330 - 4331, 7841 - 7842 |
| Direction L1: << | Initial region span: 1-9,11-13,14-148 | Gap history (edge excluded): 9-14 -> 9-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.37e-04 | |
| Rec. model vs L1: 7.78e-16 | Rec. model vs L2: 1.36e-87 | |
| Flags: Model_2BP_Best | | |
XFJ.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
9 |
15.114291 |
None |
None |
None |
* |
* |
* |
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
11 |
12.675918 |
NaN |
NaN |
NaN |
* |
* |
* |
| NL.4.1 |
26 |
12 |
9.730528 |
-10.269472 |
30.538945 |
2.388130e-06 |
|
* |
|
| JN.1.1.6 |
13 |
12 |
8.025780 |
-11.974220 |
33.948441 |
4.340961e-07 |
|
* |
|
| XEC.39 |
155 |
12 |
7.620273 |
-12.379727 |
34.759454 |
2.895320e-07 |
|
* |
|
| KS.1 |
505 |
11 |
7.545340 |
-2.454660 |
14.909319 |
5.916560e-03 |
* |
* |
|
| EA.1 |
124 |
13 |
6.980938 |
-23.019062 |
56.038124 |
6.931118e-12 |
|
|
|
| HF.1.1 |
292 |
13 |
6.980938 |
-30.070499 |
70.140998 |
6.012114e-15 |
|
|
|
| EA.2 |
17 |
13 |
6.980938 |
-23.019062 |
56.038124 |
6.931118e-12 |
|
|
|
| BA.5.2.35 |
1368 |
13 |
6.978010 |
-23.021990 |
56.043981 |
6.931118e-12 |
|
|
|
| BQ.1.1.52 |
476 |
13 |
6.968253 |
-23.031747 |
56.063494 |
6.862152e-12 |
|
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
14 |
290.448367 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
14 |
270.809714 |
285.918573 |
-257.837145 |
2.939577e-09 |
|
* |
|
| LF.7.9 |
20 |
1 |
229.837314 |
240.081891 |
-166.163783 |
3.632669e-29 |
|
|
|
| LF.7 |
58 |
1 |
182.882400 |
180.206482 |
-46.412964 |
3.604489e-55 |
|
|
|
| LF.7.2.1 |
67 |
1 |
168.121624 |
178.366201 |
-42.732402 |
5.724557e-56 |
|
|
|
| PC.3 |
42 |
17 |
158.301525 |
169.861290 |
-25.722580 |
1.158957e-59 |
|
|
|
| LF.7.1 |
165 |
17 |
156.766308 |
168.301276 |
-22.602553 |
2.435387e-60 |
|
|
|
| LF.7.9.1 |
48 |
20 |
156.736585 |
162.886795 |
-11.773590 |
1.083586e-62 |
|
|
|
| PY.2 |
17 |
20 |
155.305341 |
161.498110 |
-8.996219 |
2.712473e-63 |
|
|
|
| PC.4 |
10 |
1 |
153.511694 |
163.756271 |
-13.512543 |
2.586423e-62 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4665_G|A, 5239_C|T, 6183_A|G, 7006_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15250_A|G, 15714_C|T, 15756_T|A, 16600_T|C,
16605_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T, 27810_T|C,
28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28419_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29296_C|T, 29510_A|C, 29734_29759
Case 46 (XFJ): IGS-10285-CVDP-3BC3A18F-E0E3-415C-97ED-0C225785CACE
| Target: 24 samples | Number of changes: 146 | |
| BC: XFJ.1 + KP.2.5 + XFJ.1 | BC BR: 5-6, 11-12 | BC BR coord: 3037 - 3038, 5238 - 5239 |
| Direction L1: << | Initial region span: 1-5,7-11,12-146 | Gap history (edge excluded): 5-12 -> 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.32e-05 | |
| Rec. model vs L1: 8.95e-16 | Rec. model vs L2: 1.60e-202 | |
| Flags: Model_2BP_Best | | |
XFJ.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
5 |
5.748333 |
None |
None |
None |
* |
* |
* |
| |||||
KP.2.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.5 |
66 |
7 |
15.417185 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.2 |
650 |
7 |
13.151366 |
3.151366 |
7.697269 |
1.038300e-01 |
* |
* |
|
| AY.86 |
33 |
11 |
8.955276 |
-42.156247 |
98.312495 |
2.190844e-21 |
|
|
|
| XBB.1.5.49 |
1290 |
9 |
5.238244 |
-24.761756 |
63.523513 |
7.855322e-14 |
|
|
|
| BA.5.1.22 |
4997 |
9 |
4.571351 |
-20.370538 |
54.741077 |
6.334565e-12 |
|
|
|
| BE.3 |
3742 |
9 |
4.169489 |
-25.830511 |
65.661022 |
2.694442e-14 |
|
|
|
| AY.90 |
1220 |
11 |
3.841100 |
-41.691015 |
97.382029 |
3.487855e-21 |
|
|
|
| B.1.241 |
765 |
11 |
3.614683 |
-36.560117 |
87.120234 |
5.895072e-19 |
|
|
|
| BA.2.10 |
14971 |
9 |
3.478889 |
-26.521111 |
67.042222 |
1.351468e-14 |
|
|
|
| BA.5.5 |
23560 |
9 |
3.428939 |
-9.117326 |
32.234652 |
4.894419e-07 |
|
|
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
12 |
308.218988 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
12 |
300.565137 |
306.365050 |
-304.730101 |
5.004514e-04 |
* |
* |
|
| LF.7.9 |
20 |
12 |
254.759708 |
260.559622 |
-213.119243 |
6.404765e-24 |
|
* |
|
| LF.7.2.1 |
67 |
12 |
193.045558 |
198.753608 |
-89.507217 |
9.224286e-51 |
|
* |
|
| PC.3 |
42 |
12 |
184.457844 |
190.233660 |
-72.467319 |
1.839686e-54 |
|
* |
|
| LF.7 |
58 |
12 |
179.573872 |
185.356394 |
-62.712788 |
1.397612e-56 |
|
* |
|
| PC.4 |
10 |
12 |
178.328728 |
184.128641 |
-60.257282 |
4.105593e-57 |
|
* |
|
| LF.7.9.1 |
48 |
12 |
177.480758 |
183.238111 |
-58.476223 |
1.685986e-57 |
|
* |
|
| LF.7.1 |
165 |
12 |
176.386507 |
182.155876 |
-56.311752 |
5.696975e-58 |
|
* |
|
| PY.2 |
17 |
12 |
176.070566 |
181.870479 |
-55.740959 |
4.284207e-58 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3053_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5219_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T,
18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25844_C|T, 25919_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29690_G|T, 29734_29759
Case 46 (XFJ): IGS-10285-CVDP-5C418B6D-4A8E-423C-9873-BB3B605DD9B9
| Target: 24 samples | Number of changes: 146 | |
| BC: XFJ.1 + GA.4.1 + XFJ.1 | BC BR: 138-139, 140-141 | BC BR coord: 28361 - 28362, 28877 - 28878 |
| Direction L1: >> | Initial region span: 1-138,139-140,141-146 | Gap history (edge excluded): 138-141 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.30e-01 | |
| Rec. model vs L1: 1.15e-17 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFJ.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
138 |
307.554472 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
138 |
302.378606 |
310.037560 |
-300.075121 |
6.313911e-03 |
* |
* |
|
| LF.7.9 |
20 |
138 |
262.340879 |
269.837314 |
-219.674628 |
2.185188e-20 |
|
* |
|
| LF.7.2.1 |
67 |
138 |
210.988783 |
218.413337 |
-116.826673 |
1.018747e-42 |
|
* |
|
| LF.7 |
58 |
138 |
197.572545 |
205.122300 |
-90.244600 |
1.714437e-48 |
|
* |
|
| PC.3 |
42 |
146 |
192.777543 |
190.890956 |
-61.781913 |
1.132690e-54 |
|
|
|
| LF.7.1 |
165 |
146 |
189.604172 |
189.067843 |
-58.135686 |
1.835249e-55 |
|
|
|
| PC.4 |
10 |
138 |
185.958101 |
193.511694 |
-67.023388 |
1.555831e-53 |
|
* |
|
| PC.3.1 |
27 |
138 |
183.581089 |
191.163082 |
-62.326164 |
1.491221e-54 |
|
* |
|
| JN.1.4 |
8971 |
146 |
179.139713 |
178.456944 |
-36.913889 |
4.504629e-60 |
|
|
|
| |||||
GA.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| GA.4.1 |
97 |
140 |
9.361926 |
NaN |
NaN |
NaN |
* |
* |
* |
| B.1.1.528 |
51 |
140 |
9.361926 |
9.361926 |
-14.723851 |
1.000000 |
* |
* |
|
| B.1.1.322 |
31 |
140 |
9.361926 |
9.361926 |
-14.723851 |
1.000000 |
* |
* |
|
| C.37.1 |
77 |
140 |
9.268469 |
9.268469 |
-14.536938 |
0.913931 |
* |
* |
|
| MC.1.4.1 |
41 |
140 |
9.156617 |
9.156617 |
-14.313235 |
0.814647 |
* |
* |
|
| B.1.1.408 |
15 |
140 |
9.075724 |
9.075724 |
-14.151448 |
0.752014 |
* |
* |
|
| XBB.3.1 |
13 |
140 |
8.390910 |
8.390910 |
-12.781820 |
0.379083 |
* |
* |
|
| XBB.1.43.1 |
22 |
140 |
7.975631 |
7.975631 |
-11.951262 |
0.250324 |
* |
* |
|
| FY.8.1 |
29 |
140 |
7.232504 |
7.232504 |
-10.465008 |
0.119433 |
* |
* |
|
| FY.4.1 |
61 |
140 |
7.229223 |
7.229223 |
-10.458446 |
0.118837 |
* |
* |
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
141 |
7.551709 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T,
10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 16887_C|T, 17410_C|T, 18163_A|G,
18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22093_G|C, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25844_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T,
28362_28370, 28877_A|T, 28878_G|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 46 (XFJ): IGS-10285-CVDP-945917A7-03F4-44B7-B15E-9DAC718B9032
| Target: 24 samples | Number of changes: 146 | |
| BC: XFJ.1 + GA.4.1 + XFJ.1 | BC BR: 138-139, 140-141 | BC BR coord: 28361 - 28362, 28877 - 28878 |
| Direction L1: >> | Initial region span: 1-138,139-140,141-146 | Gap history (edge excluded): 138-141 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.30e-01 | |
| Rec. model vs L1: 1.15e-17 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFJ.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
138 |
307.554472 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFJ.3 |
14 |
138 |
302.378606 |
310.037560 |
-294.075121 |
6.313911e-03 |
* |
* |
|
| LF.7.9 |
20 |
138 |
262.340879 |
269.837314 |
-213.674628 |
2.185188e-20 |
|
* |
|
| LF.7.2.1 |
67 |
138 |
200.697070 |
208.121624 |
-90.243247 |
3.443538e-47 |
|
* |
|
| PC.3 |
42 |
146 |
192.777543 |
190.890956 |
-55.781913 |
1.132690e-54 |
|
|
|
| LF.7 |
58 |
138 |
187.136582 |
194.686337 |
-63.372674 |
5.038004e-53 |
|
* |
|
| PC.4 |
10 |
138 |
185.958101 |
193.511694 |
-61.023388 |
1.555831e-53 |
|
* |
|
| PC.3.1 |
27 |
138 |
183.581089 |
191.163082 |
-56.326164 |
1.491221e-54 |
|
* |
|
| LF.7.1 |
165 |
146 |
179.520565 |
178.984236 |
-31.968471 |
7.653060e-60 |
|
|
|
| LF.7.9.1 |
48 |
138 |
170.950858 |
178.501748 |
-31.003495 |
4.711968e-60 |
|
* |
|
| |||||
GA.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| GA.4.1 |
97 |
140 |
9.361926 |
NaN |
NaN |
NaN |
* |
* |
* |
| B.1.1.528 |
51 |
140 |
9.361926 |
9.361926 |
-14.723851 |
1.000000 |
* |
* |
|
| B.1.1.322 |
31 |
140 |
9.361926 |
9.361926 |
-14.723851 |
1.000000 |
* |
* |
|
| C.37.1 |
77 |
140 |
9.268469 |
9.268469 |
-14.536938 |
0.913931 |
* |
* |
|
| MC.1.4.1 |
41 |
140 |
9.156617 |
9.156617 |
-14.313235 |
0.814647 |
* |
* |
|
| B.1.1.408 |
15 |
140 |
9.075724 |
9.075724 |
-14.151448 |
0.752014 |
* |
* |
|
| XBB.3.1 |
13 |
140 |
8.390910 |
8.390910 |
-12.781820 |
0.379083 |
* |
* |
|
| XBB.1.43.1 |
22 |
140 |
7.975631 |
7.975631 |
-11.951262 |
0.250324 |
* |
* |
|
| FY.8.1 |
29 |
140 |
7.232504 |
7.232504 |
-10.465008 |
0.119433 |
* |
* |
|
| FY.4.1 |
61 |
140 |
7.229223 |
7.229223 |
-10.458446 |
0.118837 |
* |
* |
|
| |||||
XFJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFJ.1 |
59 |
141 |
7.551709 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T,
10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G,
18894_C|T, 19955_C|T, 20055_A|G, 20799_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22093_G|C, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23728_T|C, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25844_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27414_G|A, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C,
28311_C|T, 28362_28370, 28877_A|T, 28878_G|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 52 (XES): USA/IVY-G25Y93M8/2025
| Target: 59 samples | Number of changes: 152 | |
| BC: KP.3.3 + KP.2.3.15 + KP.3.3 | BC BR: 11-12, 16-17 | BC BR coord: 4330 - 4331, 6470 - 6471 |
| Direction L1: << | Initial region span: 1-11,12-16,17-152 | Gap history (edge excluded): 11-17 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.08e-10 | |
| Rec. model vs L1: 9.36e-20 | Rec. model vs L2: 4.00e-70 | |
| Flags: Model_2BP_Best | | |
KP.3.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
11 |
5.816434 |
None |
None |
None |
* |
* |
* |
| |||||
KP.2.3.15 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.15 |
59 |
16 |
13.298012 |
NaN |
NaN |
NaN |
* |
* |
* |
| AY.70 |
861 |
12 |
5.662483 |
-41.890318 |
109.780635 |
1.074701e-24 |
|
|
|
| FL.24 |
72 |
12 |
4.611686 |
-39.810180 |
105.620360 |
8.602409e-24 |
|
|
|
| BF.7 |
11554 |
14 |
4.040111 |
-5.197174 |
36.394348 |
9.283753e-09 |
|
|
|
| AA.5 |
52 |
12 |
3.797674 |
-47.083547 |
120.167094 |
5.958373e-27 |
|
|
|
| AY.85 |
549 |
12 |
3.743404 |
-37.364394 |
100.728788 |
9.919050e-23 |
|
|
|
| AY.127 |
7489 |
12 |
3.663016 |
-27.742787 |
81.485573 |
1.494111e-18 |
|
|
|
| BA.2.52 |
379 |
13 |
3.469920 |
-26.530080 |
79.060159 |
5.035595e-18 |
|
|
|
| NY.16.1 |
20 |
12 |
3.366891 |
-34.734554 |
95.469109 |
1.376146e-21 |
|
|
|
| HY.1 |
179 |
13 |
3.221021 |
-26.778979 |
79.557958 |
3.921725e-18 |
|
|
|
| |||||
KP.3.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
17 |
208.255914 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1 |
1957 |
15 |
190.995817 |
178.431488 |
-20.862975 |
3.324640e-16 |
|
|
|
| KP.3.1.1 |
12013 |
17 |
186.671839 |
192.864437 |
-49.728875 |
6.177113e-10 |
|
* |
|
| KP.2.3 |
4440 |
17 |
178.490339 |
173.622995 |
-11.245989 |
2.722449e-18 |
|
* |
|
| KP.3 |
769 |
17 |
157.248598 |
152.328392 |
31.343217 |
1.536946e-27 |
|
* |
|
| MC.24.1 |
25 |
17 |
155.723534 |
150.865679 |
34.268643 |
3.551545e-28 |
|
* |
|
| XEC.2 |
921 |
57 |
153.328110 |
147.582506 |
40.834988 |
1.336384e-29 |
|
|
|
| MC.8.1 |
174 |
48 |
152.771335 |
125.120295 |
85.759410 |
2.341563e-39 |
|
|
|
| PG.3 |
31 |
48 |
152.651791 |
122.567783 |
90.864434 |
1.828331e-40 |
|
|
|
| KP.2 |
1589 |
17 |
150.262194 |
145.352550 |
45.294900 |
1.436993e-30 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1358_G|A, 1404_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4891_C|T, 5310_C|T, 6022_A|T, 6183_A|G, 6471_C|A, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 8836_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17334_G|T, 17410_C|T, 17745_C|T, 18163_A|G, 18492_A|G, 18642_A|C, 18894_C|T, 19011_C|T, 19803_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21633_21641, 21653_21655, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22000_C|A, 22032_T|C, 22033_C|A, 22034_A|G, 22054_T|C, 22194_22196, 22200_T|G, 22208_C|T,
22225_G|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23126_G|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T,
24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27373, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28093_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/AR-CDC-2-8381796/2025
| Target: 269 samples | Number of changes: 142 | |
| BC: KP.2 + KP.3.1.1 + KP.2 | BC BR: 10-11, 20-21 | BC BR coord: 6183 - 6184, 9533 - 9534 |
| Direction L1: << | Initial region span: 1-10,13-20,21-142 | Gap history (edge excluded): 10-21 -> 10-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.83e-04 | |
| Rec. model vs L1: 7.15e-28 | Rec. model vs L2: 9.68e-29 | |
| Flags: Model_2BP_Best | | |
KP.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
10 |
18.699517 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
13 |
12.244538 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
12 |
11.352938 |
11.157600 |
1.684800 |
2.351374e+00 |
* |
* |
|
| JN.1.1 |
3081 |
13 |
10.526826 |
0.496192 |
23.007616 |
5.489985e-05 |
* |
* |
|
| NL.15 |
13 |
17 |
10.497880 |
-22.343583 |
68.687166 |
6.611274e-15 |
|
|
|
| KP.2.8 |
51 |
17 |
9.131004 |
-28.097270 |
80.194541 |
2.104224e-17 |
|
|
|
| XBB.1.5.20 |
860 |
18 |
8.615822 |
-61.384178 |
146.768357 |
7.335481e-32 |
|
|
|
| BR.5 |
15 |
18 |
8.615822 |
-70.278195 |
164.556391 |
1.005493e-35 |
|
|
|
| BR.4 |
11 |
18 |
8.615822 |
-70.278195 |
164.556391 |
1.005493e-35 |
|
|
|
| BR.1.2 |
119 |
18 |
8.615822 |
-70.278195 |
164.556391 |
1.005493e-35 |
|
|
|
| BR.2.1 |
313 |
18 |
8.606222 |
-61.393778 |
146.787557 |
7.262492e-32 |
|
|
|
| |||||
KP.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
21 |
216.533120 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
1 |
210.962964 |
200.660225 |
-111.320449 |
9.644246e-16 |
|
|
|
| JN.1 |
17255 |
1 |
202.008374 |
190.850774 |
-91.701548 |
5.294676e-20 |
|
|
|
| XEC.2 |
921 |
17 |
197.785733 |
212.810206 |
-135.620411 |
1.823670e-10 |
|
|
|
| MC.24.1 |
25 |
39 |
196.620020 |
213.609804 |
-137.219608 |
4.058652e-10 |
|
|
|
| KS.1.1.2 |
252 |
1 |
195.583419 |
205.072607 |
-120.145215 |
7.974040e-14 |
|
|
|
| KP.3 |
769 |
17 |
188.912328 |
203.749124 |
-117.498247 |
2.119524e-14 |
|
|
|
| XEK.5 |
28 |
21 |
186.525203 |
205.243853 |
-120.487706 |
9.451669e-14 |
|
* |
|
| XEC.9 |
305 |
17 |
186.478244 |
200.410249 |
-110.820498 |
7.510946e-16 |
|
|
|
| XEK.1 |
88 |
21 |
185.726148 |
204.507477 |
-119.014953 |
4.509523e-14 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6701_C|T, 6989_T|C, 7842_A|G, 7936_G|A, 8293_C|T, 8386_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9532_C|T, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22546_A|G, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25163_C|A, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/CA-CDPH-500146881/2025
| Target: 269 samples | Number of changes: 135 | |
| BC: KP.2 + LF.7.1.4 + KP.2 | BC BR: 8-9, 10-11 | BC BR coord: 6183 - 6184, 7118 - 7119 |
| Direction L1: << | Initial region span: 1-8,9-10,12-135 | Gap history (edge excluded): 8-12 -> 10-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.34e-08 | |
| Rec. model vs L1: 2.65e-19 | Rec. model vs L2: 6.49e-120 | |
| Flags: Model_2BP_Best | | |
KP.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
8 |
9.339591 |
None |
None |
None |
* |
* |
* |
| |||||
LF.7.1.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.1.4 |
12 |
10 |
9.812013 |
NaN |
NaN |
NaN |
* |
* |
* |
| BF.7.19 |
413 |
11 |
7.315788 |
2.329466 |
-0.658931 |
5.642574e-04 |
* |
* |
|
| BA.5.1.31 |
43 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| XFH.2 |
15 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| XFH.1 |
10 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| LF.7.1.8 |
44 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| LF.7.1.5 |
40 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| LF.7.1.6 |
14 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| LF.7.1.10 |
13 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| PL.1.1 |
12 |
9 |
5.680838 |
-4.319162 |
12.638323 |
7.301616e-07 |
|
* |
|
| |||||
KP.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
12 |
227.030213 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.24.1 |
25 |
36 |
207.337064 |
206.174727 |
-114.349455 |
8.361236e-13 |
|
|
|
| KS.1.1.2 |
252 |
2 |
198.574836 |
197.301174 |
-96.602348 |
1.169249e-16 |
|
|
|
| XEC.2 |
921 |
2 |
197.286315 |
201.783492 |
-105.566985 |
1.036854e-14 |
|
|
|
| XEC.39 |
155 |
2 |
195.810694 |
199.541295 |
-101.082591 |
1.098314e-15 |
|
|
|
| XEC.9 |
305 |
12 |
193.268152 |
192.615335 |
-87.230669 |
1.079536e-18 |
|
* |
|
| XEC.8 |
592 |
2 |
193.033005 |
198.159555 |
-98.319110 |
2.763123e-16 |
|
|
|
| KP.3.3 |
1715 |
12 |
192.457197 |
200.050794 |
-102.101587 |
1.829013e-15 |
|
* |
|
| XEC.32 |
42 |
12 |
192.170275 |
191.534526 |
-85.069051 |
3.666057e-19 |
|
* |
|
| XEK.5 |
28 |
12 |
191.854108 |
191.292466 |
-84.584933 |
2.869440e-19 |
|
* |
|
|
Target sequence
, 241_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6310_C|T, 6701_C|T, 7528_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13551_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 16887_C|T, 16943_G|T,
17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T,
22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A,
22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C
Case 55 (XEQ): USA/CO-CDC-QDX33808363/2025
| Target: 269 samples | Number of changes: 146 | |
| BC: JN.1 + KP.2 | BC BR: 20-21 | BC BR coord: 8866 - 8867 |
| Direction L1: << | Initial region span: 1-19,21-146 | Gap history (edge excluded): 19-21 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.08e-15 | |
| Rec. model vs L1: 1.10e-21 | Rec. model vs L2: 3.08e-35 | |
| Flags: Model_1BP_Best | | |
JN.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
19 |
27.756261 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.2 |
1334 |
19 |
18.419532 |
8.419532 |
41.160937 |
4.088859e-09 |
|
* |
|
| KP.2.3.10 |
10 |
9 |
17.811654 |
-33.065210 |
124.130421 |
3.934554e-27 |
|
|
|
| PL.1.1 |
12 |
9 |
17.542321 |
-53.203181 |
164.406362 |
7.050252e-36 |
|
|
|
| KP.3.1.2 |
28 |
9 |
16.671559 |
-2.016098 |
62.032197 |
1.201543e-13 |
|
|
|
| JN.1.69 |
32 |
9 |
16.648503 |
-29.630829 |
117.261658 |
1.220948e-25 |
|
|
|
| LF.7.2 |
35 |
9 |
16.500916 |
-48.563748 |
155.127496 |
7.300137e-34 |
|
|
|
| JN.1.50.2 |
33 |
9 |
16.493668 |
-38.546208 |
135.092416 |
1.640445e-29 |
|
|
|
| MK.1 |
151 |
9 |
16.148381 |
-34.517762 |
127.035525 |
9.183263e-28 |
|
|
|
| KP.2.3.7 |
54 |
9 |
16.068823 |
-44.009436 |
146.018872 |
6.942924e-32 |
|
|
|
| |||||
KP.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
21 |
207.686381 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.24.1 |
25 |
46 |
204.783064 |
177.052837 |
-86.105674 |
4.983793e-14 |
|
|
|
| JN.1 |
17255 |
1 |
193.685648 |
165.951070 |
-63.902140 |
7.494105e-19 |
|
|
|
| MR.2 |
14 |
46 |
189.417525 |
157.189625 |
-46.379249 |
1.175710e-22 |
|
|
|
| XEC.2 |
921 |
21 |
187.695236 |
187.695236 |
-107.390471 |
2.081869e-09 |
|
* |
|
| XEK.5 |
28 |
47 |
186.826807 |
162.280931 |
-56.561861 |
1.909234e-20 |
|
|
|
| XEC.2.2 |
273 |
47 |
185.619187 |
173.039121 |
-78.078242 |
8.992236e-16 |
|
|
|
| XEK.1 |
88 |
47 |
185.381124 |
161.504865 |
-55.009729 |
8.795911e-21 |
|
|
|
| XEC.9 |
305 |
47 |
184.400272 |
163.854822 |
-59.709645 |
9.223014e-20 |
|
|
|
| XEC.2.1 |
265 |
47 |
184.093029 |
145.075317 |
-22.150634 |
6.439060e-28 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4228_A|T, 4321_C|T, 4901_C|T, 6183_A|G, 6312_C|T, 6651_C|T, 6701_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
8861_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12439_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
14396_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18329_C|A, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22149_A|G, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/CT-DPH-1286600001/2025
| Target: 269 samples | Number of changes: 138 | |
| BC: KS.1.1.2 + MC.24.1 | BC BR: 40-41 | BC BR coord: 17411 - 17412 |
| Direction L1: << | Initial region span: 1-34,43-138 | Gap history (edge excluded): 34-43 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.49e-16 | |
| Rec. model vs L1: 4.77e-36 | Rec. model vs L2: 1.53e-36 | |
| Flags: Model_1BP_Best | | |
KS.1.1.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KS.1.1.2 |
252 |
34 |
47.019733 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
27 |
40.138102 |
17.412739 |
65.174522 |
5.031312e-08 |
|
|
|
| XEC.2 |
921 |
24 |
33.034695 |
13.813580 |
72.372840 |
1.374742e-09 |
|
|
|
| JN.1.13.1 |
751 |
27 |
32.561232 |
9.482411 |
81.035178 |
1.801169e-11 |
|
|
|
| LB.1.3 |
778 |
27 |
32.215153 |
8.764540 |
82.470921 |
8.811178e-12 |
|
|
|
| JN.1 |
17255 |
34 |
31.655936 |
25.492705 |
49.014590 |
1.624728e-04 |
* |
* |
|
| JN.1.7 |
1974 |
18 |
30.637924 |
-1.798158 |
103.596317 |
2.273593e-16 |
|
|
|
| JN.1.32 |
436 |
18 |
30.396258 |
-1.226359 |
102.452717 |
4.040472e-16 |
|
|
|
| MC.1.1 |
107 |
18 |
30.184200 |
-45.383964 |
190.767928 |
2.679093e-35 |
|
|
|
| JN.1.8.3 |
121 |
27 |
29.995699 |
-15.208419 |
130.416839 |
3.410545e-22 |
|
|
|
| |||||
MC.24.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.24.1 |
25 |
43 |
181.001520 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.1 |
932 |
49 |
172.187927 |
146.537821 |
-65.075642 |
1.108975e-11 |
|
|
|
| KP.3.3 |
1715 |
43 |
169.068034 |
159.832038 |
-91.664076 |
6.556852e-06 |
|
* |
|
| JN.1.4 |
8971 |
4 |
167.852413 |
142.858196 |
-57.716391 |
2.797164e-13 |
|
|
|
| MC.19 |
221 |
51 |
165.658470 |
133.634976 |
-39.269952 |
2.756458e-17 |
|
|
|
| KP.2 |
1589 |
43 |
165.101600 |
155.866187 |
-83.732375 |
1.243706e-07 |
|
* |
|
| KS.1.1.2 |
252 |
2 |
164.872022 |
130.085858 |
-32.171717 |
7.917827e-19 |
|
|
|
| MC.11 |
393 |
49 |
164.114415 |
131.015160 |
-34.030320 |
2.006780e-18 |
|
|
|
| KP.3 |
769 |
49 |
163.561223 |
148.132525 |
-68.265051 |
5.465393e-11 |
|
|
|
| MC.13 |
807 |
49 |
163.135411 |
137.454608 |
-46.909216 |
1.257061e-15 |
|
|
|
|
Target sequence
, 203_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6701_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 9814_T|C,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11124_C|T, 11288_11296, 11727_G|A, 12076_C|T, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14773_G|A, 15714_C|T,
15756_T|A, 16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18375_T|C, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C,
22684_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A,
22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C,
29734_29759
Case 55 (XEQ): USA/DC-CDC-2-8398675/2025
| Target: 269 samples | Number of changes: 145 | |
| BC: LB.1.3.2 + KP.2 | BC BR: 13-14 | BC BR coord: 7118 - 7119 |
| Direction L1: << | Initial region span: 1-10,16-145 | Gap history (edge excluded): 10-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.01e-07 | |
| Rec. model vs L1: 4.68e-67 | Rec. model vs L2: 1.32e-16 | |
| Flags: Model_1BP_Best | | |
LB.1.3.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LB.1.3.2 |
390 |
10 |
20.309495 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.28 |
304 |
10 |
19.754430 |
-1.019295 |
42.038590 |
5.644495e-08 |
|
* |
|
| JN.1 |
17255 |
12 |
18.739122 |
18.543784 |
2.912431 |
1.772542e+01 |
* |
|
|
| LB.1.3 |
778 |
10 |
17.872098 |
11.441243 |
17.117514 |
1.455239e-02 |
* |
* |
|
| JN.1.32 |
436 |
10 |
17.755495 |
11.901429 |
16.197143 |
2.305206e-02 |
* |
* |
|
| LB.1.7 |
1971 |
10 |
16.294931 |
3.115380 |
33.769240 |
3.527222e-06 |
|
* |
|
| JN.1.8.3 |
121 |
10 |
14.129862 |
-2.260347 |
44.520694 |
1.633428e-08 |
|
* |
|
| JN.1.16.3 |
52 |
12 |
13.746642 |
3.746642 |
32.506716 |
6.622749e-06 |
|
|
|
| NY.16 |
136 |
10 |
12.300606 |
-20.180270 |
80.360540 |
2.694901e-16 |
|
* |
|
| JN.1.4.2 |
736 |
10 |
12.145639 |
-4.247291 |
48.494581 |
2.244013e-09 |
|
* |
|
| |||||
KP.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
16 |
201.442275 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
3 |
193.114559 |
177.728291 |
-61.456583 |
2.447752e-02 |
* |
|
|
| KS.1.1.2 |
252 |
16 |
187.607156 |
167.607156 |
-41.214312 |
9.806992e-07 |
|
* |
|
| MC.24.1 |
25 |
41 |
186.620020 |
156.093432 |
-18.186865 |
9.835725e-12 |
|
|
|
| KP.3.1 |
1957 |
41 |
184.031878 |
173.813810 |
-53.627620 |
4.880952e-04 |
* |
|
|
| MC.1 |
932 |
46 |
183.160501 |
135.289174 |
23.421652 |
9.063786e-21 |
|
|
|
| JN.1 |
17255 |
1 |
183.114049 |
164.570265 |
-35.140530 |
4.714679e-08 |
|
|
|
| XEC.2.1 |
265 |
41 |
177.565336 |
137.332696 |
19.334608 |
7.005544e-20 |
|
|
|
| KP.3 |
769 |
49 |
177.548733 |
144.148001 |
5.703998 |
6.384969e-17 |
|
|
|
| XEC.2 |
921 |
41 |
176.312932 |
155.380305 |
-16.760610 |
4.811559e-12 |
|
|
|
|
Target sequence
, 241_C|T, 504_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5704_G|T, 6183_A|G, 6701_C|T, 7279_C|T, 7294_G|A, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14676_C|T, 15714_C|T,
15756_T|A, 16392_T|C, 16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20389_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22323_C|T,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23185_C|T, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/IL-RIPHL_15496_G/2025
| Target: 269 samples | Number of changes: 147 | |
| BC: MC.24.1 + LB.1.7 + MC.24.1 | BC BR: 3-4, 43-44 | BC BR coord: 896 - 897, 17409 - 17410 |
| Direction L1: << | Initial region span: 1-3,17-43,44-147 | Gap history (edge excluded): 3-44 -> 3-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.13e-28 | |
| Rec. model vs L1: 5.52e-38 | Rec. model vs L2: 2.52e-54 | |
| Flags: Model_2BP_Best | | |
MC.24.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.24.1 |
25 |
3 |
4.677997 |
None |
None |
None |
* |
* |
* |
| |||||
LB.1.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LB.1.7 |
1971 |
17 |
18.791066 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
17 |
15.216481 |
-5.280363 |
122.560725 |
1.144537e+00 |
* |
* |
|
| JN.1.4 |
8971 |
17 |
15.116107 |
-4.483100 |
120.966201 |
2.534509e+00 |
* |
* |
|
| KP.2.3 |
4440 |
17 |
10.639991 |
-11.903808 |
135.807617 |
1.518549e-03 |
* |
* |
|
| JN.1.1 |
3081 |
33 |
10.526857 |
-19.939366 |
151.878733 |
4.918953e-07 |
|
|
|
| BA.2.86.1 |
1343 |
17 |
7.355318 |
-18.370930 |
148.741861 |
2.364368e-06 |
|
* |
|
| JN.1.4.5 |
1757 |
39 |
6.345757 |
-36.794167 |
185.588335 |
2.354177e-14 |
|
|
|
| LF.7.6 |
15 |
43 |
5.231571 |
-94.244932 |
300.489864 |
2.640105e-39 |
|
|
|
| JN.1.7.1 |
120 |
43 |
4.761567 |
-50.407740 |
212.815479 |
2.876867e-20 |
|
|
|
| B.1.1.318 |
1569 |
43 |
4.724562 |
-302.580461 |
717.160922 |
8.767591e-130 |
|
|
|
| |||||
MC.24.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.24.1 |
25 |
44 |
184.698786 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2 |
1589 |
30 |
181.969180 |
184.331518 |
-134.663037 |
6.441460e-03 |
* |
|
|
| MR.2 |
14 |
44 |
169.333247 |
174.052066 |
-114.104132 |
2.210228e-07 |
|
* |
|
| XEC.2 |
921 |
44 |
167.776614 |
172.458172 |
-110.916344 |
4.507221e-08 |
|
* |
|
| XEC.2.1 |
265 |
44 |
167.475708 |
172.148486 |
-110.296971 |
3.305807e-08 |
|
* |
|
| KP.3.1 |
1957 |
44 |
167.271401 |
171.952565 |
-109.905131 |
2.720133e-08 |
|
* |
|
| MC.8.1 |
174 |
59 |
166.171095 |
143.363447 |
-52.726894 |
1.042584e-20 |
|
|
|
| XEK.5 |
28 |
44 |
165.161097 |
169.805808 |
-105.611616 |
3.168524e-09 |
|
* |
|
| XEC.2.2 |
273 |
44 |
163.953477 |
168.635326 |
-103.270653 |
9.834051e-10 |
|
* |
|
| XEK.1 |
88 |
44 |
163.715414 |
168.422805 |
-102.845610 |
7.971327e-10 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1738_G|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3787_C|T, 4184_G|A, 4321_C|T, 5300_G|A, 6183_A|G, 6701_C|T, 7331_G|T, 7393_G|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 9693_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11109_C|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12827_T|C, 12880_C|T,
13339_T|C, 14265_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22048_T|C, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|A, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28396_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/IL-RIPHL_33562_G/2025
| Target: 269 samples | Number of changes: 145 | |
| BC: XEC.2 + KP.3 | BC BR: 136-137 | BC BR coord: 28271 - 28272 |
| Direction L1: >> | Initial region span: 1-136,137-145 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.73e-02 | |
| Rec. model vs L1: 8.12e-19 | Rec. model vs L2: 1.35e-28 | |
| Flags: Model_1BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
136 |
193.710444 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
145 |
189.538884 |
180.134825 |
-46.269650 |
1.271898e-06 |
|
|
|
| KP.2.3 |
4440 |
145 |
187.470520 |
177.966295 |
-41.932590 |
1.452223e-07 |
|
|
|
| JN.1 |
17255 |
145 |
180.465957 |
171.209609 |
-28.419219 |
1.691898e-10 |
|
|
|
| KS.1.1.2 |
252 |
111 |
178.369348 |
159.505838 |
-5.011677 |
1.396231e-15 |
|
|
|
| JN.1.4 |
8971 |
145 |
173.726166 |
163.385510 |
-12.771021 |
6.761139e-14 |
|
|
|
| KP.3.1 |
1957 |
145 |
169.602308 |
159.056996 |
-4.113991 |
8.902761e-16 |
|
|
|
| KP.2 |
1589 |
138 |
159.016689 |
157.582056 |
-1.164113 |
2.036762e-16 |
|
|
|
| KP.3.3 |
1715 |
136 |
153.170217 |
153.170217 |
7.659565 |
2.475721e-18 |
|
* |
|
| XEC.39 |
155 |
110 |
152.000195 |
149.885928 |
14.228144 |
9.269244e-20 |
|
|
|
| |||||
KP.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3 |
769 |
137 |
15.147852 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.42.1 |
18 |
137 |
13.781451 |
13.781451 |
-9.562902 |
0.254107 |
* |
* |
|
| JN.1.51.1 |
24 |
137 |
13.685660 |
13.685660 |
-9.371320 |
0.231078 |
* |
* |
|
| JN.1.56 |
21 |
137 |
13.477848 |
13.477848 |
-8.955696 |
0.188247 |
* |
* |
|
| MC.36 |
49 |
137 |
13.000573 |
13.000573 |
-8.001146 |
0.116484 |
* |
* |
|
| JN.1.27 |
62 |
137 |
12.605402 |
12.605402 |
-7.210805 |
0.078473 |
* |
* |
|
| KP.3.4 |
62 |
137 |
12.511552 |
12.511552 |
-7.023105 |
0.071361 |
* |
* |
|
| MC.24 |
831 |
137 |
12.244533 |
12.244533 |
-6.489066 |
0.054749 |
* |
* |
|
| JN.1.52 |
150 |
137 |
11.735295 |
11.735295 |
-5.470591 |
0.032876 |
* |
* |
|
| LB.1.2.2 |
175 |
137 |
11.712458 |
11.712458 |
-5.424915 |
0.032065 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2761_A|C, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4579_T|A, 6183_A|G, 6701_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14262_C|T, 14408_C|T, 15714_C|T,
15756_T|A, 16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18804_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22051_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24381_C|T, 24424_A|T, 24469_T|A, 24745_C|T, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26753_C|T, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28705_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/MN-MDH-46610/2025
| Target: 269 samples | Number of changes: 146 | |
| BC: KP.2 + CK.1 | BC BR: 142-143 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-142,143-146 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.43e-14 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
142 |
200.779066 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3 |
4440 |
146 |
195.425509 |
190.516695 |
-59.033391 |
3.483110e-05 |
* |
|
|
| XEC.2 |
921 |
136 |
189.789308 |
186.155651 |
-50.311302 |
4.450853e-07 |
|
|
|
| JN.1 |
17255 |
145 |
180.547259 |
178.709717 |
-35.419435 |
2.600883e-10 |
|
|
|
| JN.1.4 |
8971 |
146 |
177.946561 |
175.354170 |
-28.708340 |
9.079518e-12 |
|
|
|
| KP.3.1.1 |
12013 |
145 |
177.786690 |
175.585106 |
-29.170211 |
1.142748e-11 |
|
|
|
| KP.3.1 |
1957 |
145 |
168.299378 |
167.601554 |
-13.203108 |
3.891429e-15 |
|
|
|
| KS.1.1.2 |
252 |
112 |
166.982337 |
160.603613 |
0.792774 |
3.566311e-18 |
|
|
|
| KP.3 |
769 |
142 |
158.828011 |
158.828011 |
4.343977 |
6.044307e-19 |
|
* |
|
| KP.3.3 |
1715 |
136 |
156.894467 |
153.275910 |
15.448180 |
2.337979e-21 |
|
|
|
| |||||
CK.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| CK.1 |
451 |
143 |
9.547834 |
NaN |
NaN |
NaN |
* |
* |
* |
| CB.1 |
82 |
144 |
9.064721 |
-0.935279 |
11.870559 |
2.795261e-05 |
* |
* |
|
| BA.2.60 |
31 |
144 |
8.948762 |
-1.051238 |
12.102477 |
2.491601e-05 |
* |
* |
|
| JN.1.38 |
247 |
143 |
8.096348 |
8.096348 |
-6.192696 |
2.334004e-01 |
* |
* |
|
| GR.1 |
120 |
144 |
7.582377 |
-7.750882 |
25.501764 |
3.066941e-08 |
|
* |
|
| XBB.1.5.80 |
186 |
144 |
7.120634 |
-2.879366 |
15.758731 |
3.996866e-06 |
|
* |
|
| BQ.1.12 |
2465 |
144 |
6.677357 |
5.622896 |
-1.245792 |
1.974214e-02 |
* |
* |
|
| KP.2.3 |
4440 |
144 |
5.298974 |
4.908814 |
0.182373 |
9.657698e-03 |
* |
* |
|
| BF.4 |
1166 |
144 |
5.223763 |
-4.776237 |
19.552475 |
6.008022e-07 |
|
* |
|
| BA.5.3.2 |
887 |
144 |
5.073932 |
4.348427 |
1.303147 |
5.516564e-03 |
* |
* |
|
|
Target sequence
, 241_C|T, 664_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6701_C|T, 6864_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16887_C|T, 16943_G|T,
17410_C|T, 18163_A|G, 18210_G|T, 18492_A|G, 18648_T|C, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22088_C|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25047_C|T, 25163_C|A, 25207_C|T, 25507_G|A,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29296_C|T, 29510_A|C, 29734_29759, 29807_T|A
Case 55 (XEQ): USA/NMDOH-2025009737/2025
| Target: 269 samples | Number of changes: 143 | |
| BC: JN.1 + MC.24.1 | BC BR: 40-41 | BC BR coord: 16949 - 16950 |
| Direction L1: << | Initial region span: 1-28,41-143 | Gap history (edge excluded): 28-41 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.38e-11 | |
| Rec. model vs L1: 5.29e-29 | Rec. model vs L2: 4.13e-44 | |
| Flags: Model_1BP_Best | | |
JN.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
28 |
37.933316 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3 |
4440 |
28 |
35.954419 |
29.166822 |
37.666355 |
2.773195e+00 |
* |
* |
|
| KP.3.1.1 |
12013 |
28 |
32.660241 |
12.226126 |
71.547749 |
1.219079e-07 |
|
* |
|
| JN.1.4 |
8971 |
28 |
31.196677 |
24.752323 |
46.495353 |
3.354055e-02 |
* |
* |
|
| JN.1.48 |
10 |
11 |
24.419246 |
-26.330485 |
148.660969 |
2.196889e-24 |
|
|
|
| MC.13.1 |
123 |
12 |
23.122272 |
-32.208864 |
160.417728 |
6.139833e-27 |
|
|
|
| KP.2.3.11 |
56 |
11 |
22.642094 |
-43.657710 |
183.315419 |
6.538599e-32 |
|
|
|
| JN.1.63 |
60 |
11 |
22.541687 |
-22.071041 |
140.142081 |
1.555617e-22 |
|
|
|
| JN.1.2 |
650 |
28 |
22.494418 |
-2.361175 |
100.722350 |
5.647378e-14 |
|
* |
|
| JN.1.7 |
1974 |
28 |
22.121485 |
4.418752 |
87.162496 |
4.970080e-11 |
|
* |
|
| |||||
MC.24.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.24.1 |
25 |
41 |
206.620020 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2 |
1589 |
19 |
204.474330 |
180.618363 |
-137.236726 |
5.109089e-12 |
|
|
|
| MR.2 |
14 |
41 |
191.254480 |
186.756808 |
-149.513615 |
2.359066e-09 |
|
* |
|
| XEC.2 |
921 |
31 |
189.460717 |
184.793250 |
-145.586500 |
3.322943e-10 |
|
|
|
| XEK.5 |
28 |
41 |
187.082331 |
187.082331 |
-150.164662 |
3.265020e-09 |
|
* |
|
| KP.3.1 |
1957 |
41 |
186.650574 |
182.163690 |
-140.327380 |
2.395126e-11 |
|
* |
|
| XEC.2.2 |
273 |
41 |
185.874711 |
185.874711 |
-147.749421 |
9.785003e-10 |
|
* |
|
| XEK.1 |
88 |
41 |
185.636648 |
185.636648 |
-147.273297 |
7.697156e-10 |
|
* |
|
| XEC.9 |
305 |
41 |
184.655796 |
184.655796 |
-145.311592 |
2.888828e-10 |
|
* |
|
| KP.2.3 |
4440 |
1 |
184.545901 |
155.379078 |
-86.758157 |
5.581498e-23 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1601_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6285_C|T, 6701_C|T, 7564_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 8947_C|T, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12685_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15720_C|T, 15756_T|A, 16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24090_A|G, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/NMDOH-2025013200/2025
| Target: 269 samples | Number of changes: 139 | |
| BC: JN.9 + KP.2 | BC BR: 11-12 | BC BR coord: 7118 - 7119 |
| Direction L1: << | Initial region span: 1-11,12-139 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.90e-02 | |
| Rec. model vs L1: 5.28e-125 | Rec. model vs L2: 2.54e-32 | |
| Flags: Model_1BP_Best | | |
JN.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.9 |
55 |
11 |
20.431130 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.11 |
67 |
10 |
15.851612 |
5.851612 |
22.296776 |
4.655716e-07 |
|
* |
|
| JN.18 |
316 |
11 |
15.144993 |
15.144993 |
3.710015 |
5.067032e-03 |
* |
* |
|
| JN.3 |
321 |
10 |
14.930933 |
-1.375664 |
36.751328 |
3.390071e-10 |
|
* |
|
| BA.2.86.1 |
1343 |
10 |
14.446675 |
4.446675 |
25.106651 |
1.142359e-07 |
|
* |
|
| MC.10.2.1 |
11 |
10 |
13.901608 |
-10.526839 |
55.053679 |
3.600927e-14 |
|
* |
|
| KP.2.3.13 |
25 |
10 |
13.869085 |
-0.517726 |
35.035452 |
7.971327e-10 |
|
* |
|
| JN.7 |
82 |
9 |
13.649232 |
-5.489980 |
44.979961 |
5.534610e-12 |
|
|
|
| NL.19 |
18 |
10 |
13.447284 |
3.447284 |
27.105433 |
4.202505e-08 |
|
* |
|
| JN.1.7 |
1974 |
11 |
13.362795 |
13.362795 |
7.274410 |
8.544949e-04 |
* |
* |
|
| |||||
KP.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
12 |
221.528527 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
1 |
198.733225 |
194.559029 |
-99.118058 |
1.936769e-12 |
|
|
|
| KS.1.1.2 |
252 |
5 |
192.161982 |
178.803010 |
-67.606019 |
2.784635e-19 |
|
|
|
| KP.3.3 |
1715 |
12 |
192.053222 |
192.053222 |
-94.106443 |
1.581868e-13 |
|
* |
|
| XEC.9 |
305 |
14 |
191.094001 |
184.696944 |
-79.393888 |
1.006382e-16 |
|
|
|
| XEC.8 |
592 |
5 |
187.116748 |
180.098728 |
-70.197457 |
1.016669e-18 |
|
|
|
| XEC.32 |
42 |
5 |
181.881976 |
172.252609 |
-54.505217 |
3.982350e-22 |
|
|
|
| MC.24.1 |
25 |
14 |
181.358888 |
174.961831 |
-59.923662 |
5.955332e-21 |
|
|
|
| KP.3.1.1 |
12013 |
1 |
180.974185 |
174.257093 |
-58.514186 |
2.942581e-21 |
|
|
|
| KP.3 |
769 |
14 |
178.792602 |
172.394244 |
-54.788488 |
4.580793e-22 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1684_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6183_A|G, 6701_C|T, 7842_A|G, 7945_C|T, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16887_C|T, 16943_G|T, 17410_C|T,
18163_A|G, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25003_A|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C,
29700_A|G, 29734_29759
Case 55 (XEQ): USA/NMDOH-2025014470/2025
| Target: 269 samples | Number of changes: 142 | |
| BC: JN.9 + KP.2 | BC BR: 12-13 | BC BR coord: 7118 - 7119 |
| Direction L1: << | Initial region span: 1-12,13-142 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.54e-03 | |
| Rec. model vs L1: 1.32e-124 | Rec. model vs L2: 1.32e-33 | |
| Flags: Model_1BP_Best | | |
JN.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.9 |
55 |
12 |
21.906785 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.11 |
67 |
11 |
18.228521 |
8.228521 |
17.542959 |
1.150861e-06 |
|
* |
|
| NL.19 |
18 |
11 |
17.426195 |
7.426195 |
19.147610 |
5.145362e-07 |
|
* |
|
| JN.18 |
316 |
12 |
16.818149 |
16.818149 |
0.363701 |
6.188887e-03 |
* |
* |
|
| JN.3 |
321 |
11 |
15.047946 |
-1.258651 |
36.517302 |
8.700983e-11 |
|
* |
|
| BA.2.86.1 |
1343 |
11 |
14.806444 |
4.806444 |
24.387112 |
3.745971e-08 |
|
* |
|
| LB.1.3.1 |
292 |
11 |
14.425151 |
4.425151 |
25.149698 |
2.561725e-08 |
|
* |
|
| JN.7 |
82 |
10 |
14.032355 |
-5.106858 |
44.213716 |
1.860827e-12 |
|
|
|
| JN.1.7 |
1974 |
12 |
13.049726 |
13.049726 |
7.900548 |
1.426666e-04 |
* |
* |
|
| MC.24 |
831 |
12 |
12.672824 |
8.286013 |
17.427974 |
1.215932e-06 |
|
* |
|
| |||||
KP.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
13 |
201.681620 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
3 |
190.932653 |
184.219710 |
-74.439421 |
2.613475e-08 |
|
|
|
| JN.1 |
17255 |
1 |
181.936012 |
171.807102 |
-49.614203 |
1.060358e-13 |
|
|
|
| KP.2.3 |
4440 |
3 |
174.405635 |
168.623435 |
-43.246870 |
4.409567e-15 |
|
|
|
| MC.24.1 |
25 |
41 |
173.651463 |
154.961831 |
-15.923662 |
5.125802e-21 |
|
|
|
| JN.1.4 |
8971 |
4 |
170.381607 |
164.594122 |
-35.188244 |
7.837709e-17 |
|
|
|
| XEC.2 |
921 |
1 |
170.178188 |
165.842387 |
-37.684774 |
2.721985e-16 |
|
|
|
| XEC.2.2 |
273 |
42 |
169.780712 |
153.296698 |
-12.593396 |
9.697538e-22 |
|
|
|
| XEC.9 |
305 |
42 |
168.325918 |
156.821064 |
-19.642127 |
3.292680e-20 |
|
|
|
| XEK.1 |
88 |
42 |
164.814103 |
149.955450 |
-5.910899 |
3.436512e-23 |
|
|
|
|
Target sequence
, 241_C|T, 509_523, 670_T|G, 897_C|A, 1684_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6183_A|G, 6701_C|T, 7842_A|G, 7945_C|T, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10125_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16887_C|T,
16943_G|T, 17410_C|T, 18163_A|G, 18167_C|T, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24292_A|G, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27527_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28603_C|T,
28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 55 (XEQ): USA/NY-USAFSAM-S23702/2025
| Target: 269 samples | Number of changes: 144 | |
| BC: KP.2 + JN.1.52 | BC BR: 136-137 | BC BR coord: 28361 - 28362 |
| Direction L1: >> | Initial region span: 1-136,138-144 | Gap history (edge excluded): 136-138 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.01e-07 | Rec. model vs L2: 5.24e-64 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
136 |
204.827501 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
134 |
190.823447 |
186.492555 |
-60.985111 |
1.089458e-08 |
|
|
|
| KS.1.1.2 |
252 |
136 |
185.749577 |
185.749577 |
-59.499153 |
5.172033e-09 |
|
* |
|
| XEC.8 |
592 |
134 |
181.561572 |
177.242591 |
-42.485182 |
1.047097e-12 |
|
|
|
| KP.2.3 |
4440 |
144 |
177.462439 |
169.659460 |
-27.318919 |
5.319405e-16 |
|
|
|
| XEC.18 |
165 |
134 |
172.919344 |
168.613832 |
-25.227664 |
1.870791e-16 |
|
|
|
| KP.3.3 |
1715 |
134 |
172.642419 |
168.324704 |
-24.649408 |
1.399845e-16 |
|
|
|
| KP.3.1.1 |
12013 |
136 |
169.006037 |
169.006037 |
-26.012074 |
2.763123e-16 |
|
* |
|
| JN.1 |
17255 |
141 |
167.703313 |
163.908312 |
-15.816624 |
1.693050e-18 |
|
|
|
| XEC.39 |
155 |
134 |
167.689853 |
163.383549 |
-14.767098 |
1.001533e-18 |
|
|
|
| |||||
JN.1.52 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.52 |
150 |
138 |
12.208037 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4.3 |
129 |
138 |
11.562933 |
1.562933 |
16.874135 |
5.246625e-01 |
* |
* |
|
| MC.10.1 |
650 |
138 |
10.021102 |
-7.652555 |
35.305110 |
5.196189e-05 |
* |
* |
|
| MC.13 |
807 |
138 |
9.910126 |
-0.089874 |
20.179749 |
1.002588e-01 |
* |
* |
|
| KP.3.1 |
1957 |
138 |
8.940001 |
-1.059999 |
22.119999 |
3.800643e-02 |
* |
* |
|
| KP.2.3 |
4440 |
138 |
8.828691 |
7.802979 |
4.394041 |
2.690777e+02 |
* |
* |
|
| KP.3.1.1 |
12013 |
138 |
7.885735 |
-2.114265 |
24.228530 |
1.323355e-02 |
* |
* |
|
| JN.1.4 |
8971 |
138 |
7.454435 |
5.032233 |
9.935534 |
1.677685e+01 |
* |
* |
|
| BQ.1.1.1 |
1179 |
142 |
7.119877 |
-14.746907 |
49.493813 |
4.330490e-08 |
|
|
|
| BN.1.3 |
1498 |
142 |
6.425820 |
-11.991691 |
43.983383 |
6.807981e-07 |
|
|
|
|
Target sequence
, 241_C|T, 509_523, 575_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6701_C|T, 7528_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 9655_T|C, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11020_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12418_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15720_C|T, 15756_T|A, 16887_C|T, 16943_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26606_C|T, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28690_G|T,
28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29335_T|C, 29510_A|C, 29734_29759
Case 58 (XFG): BHR/25020274266/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: XFG.3 + FY.1.4.1 + XFG.3 | BC BR: 131-132, 136-137 | BC BR coord: 26872 - 26873, 27387 - 27388 |
| Direction L1: >> | Initial region span: 1-131,132-136,138-152 | Gap history (edge excluded): 131-138 -> 136-138 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.97e-01 | |
| Rec. model vs L1: 2.86e-08 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
131 |
290.226493 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
131 |
289.964059 |
281.681666 |
-227.363333 |
7.171897e-02 |
* |
* |
|
| XFG.2 |
500 |
131 |
273.151789 |
267.357038 |
-198.714076 |
4.308892e-08 |
|
* |
|
| XFG.3.1 |
87 |
131 |
268.035180 |
261.461788 |
-186.923576 |
1.186314e-10 |
|
* |
|
| XFG.1 |
14 |
131 |
252.185044 |
246.515339 |
-157.030678 |
3.834145e-17 |
|
* |
|
| LF.7.7.1 |
188 |
131 |
220.837599 |
205.793623 |
-75.587245 |
7.928614e-35 |
|
* |
|
| LF.7.6 |
15 |
131 |
210.184030 |
188.345024 |
-40.690048 |
2.092949e-42 |
|
* |
|
| LF.7.3 |
54 |
143 |
208.760913 |
190.967197 |
-45.934395 |
2.874816e-41 |
|
|
|
| LF.7.1.8 |
44 |
131 |
206.589098 |
184.696931 |
-33.393863 |
5.439810e-44 |
|
* |
|
| LF.7.1 |
165 |
131 |
203.280392 |
193.079604 |
-50.159207 |
2.383104e-40 |
|
* |
|
| |||||
FY.1.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| FY.1.4.1 |
41 |
136 |
13.108949 |
NaN |
NaN |
NaN |
* |
* |
* |
| GS.7 |
16 |
136 |
11.905952 |
11.905952 |
-13.811904 |
0.299692 |
* |
* |
|
| JY.1.1 |
42 |
136 |
11.005410 |
11.005410 |
-12.010820 |
0.121846 |
* |
* |
|
| XBB.1.22 |
77 |
136 |
10.399274 |
10.399274 |
-10.798548 |
0.066537 |
* |
* |
|
| BA.2.32 |
367 |
136 |
9.922672 |
9.922672 |
-9.845345 |
0.041378 |
* |
* |
|
| GV.1 |
137 |
136 |
9.823099 |
9.823099 |
-9.646197 |
0.037441 |
* |
* |
|
| XBB.1.5.46 |
613 |
136 |
9.547214 |
9.547214 |
-9.094428 |
0.028297 |
* |
* |
|
| XBB.1.16.15 |
1675 |
137 |
9.529018 |
8.412148 |
-6.824296 |
0.009095 |
* |
* |
|
| XBB.1.5.10 |
817 |
137 |
9.164369 |
8.022716 |
-6.045433 |
0.006189 |
* |
* |
|
| LP.8.1 |
1124 |
137 |
8.534839 |
7.712197 |
-5.424393 |
0.004517 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
138 |
4.08917 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5911_T|C, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 14747_A|G,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18326_C|T, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27209_A|G, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28475_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29671_A|G, 29734_29759
Case 58 (XFG): BHR/25100010185/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: XFG.3 + PR.2 | BC BR: 150-151 | BC BR coord: 29412 - 29413 |
| Direction L1: >> | Initial region span: 1-143,151-153 | Gap history (edge excluded): 143-151 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.54e-08 | Rec. model vs L2: 4.65e-186 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
143 |
286.186454 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
143 |
285.971646 |
274.809638 |
-203.619276 |
6.959935e-02 |
* |
* |
|
| XFG.2 |
500 |
143 |
279.652152 |
265.062027 |
-184.124054 |
4.057271e-06 |
|
* |
|
| XFG.3.1 |
87 |
143 |
275.423658 |
266.712656 |
-187.425311 |
2.123202e-05 |
* |
* |
|
| XFG.1 |
14 |
143 |
248.245114 |
239.534111 |
-133.068223 |
3.333246e-17 |
|
* |
|
| LF.7.6 |
15 |
143 |
206.244100 |
174.700261 |
-3.400522 |
2.319448e-45 |
|
* |
|
| LF.7.7.1 |
188 |
143 |
204.706097 |
190.758652 |
-35.517305 |
2.188538e-38 |
|
* |
|
| LF.7.1.8 |
44 |
143 |
202.626179 |
177.888976 |
-9.777951 |
5.633574e-44 |
|
* |
|
| LF.7.1 |
165 |
143 |
199.315922 |
186.173883 |
-26.347767 |
2.233129e-40 |
|
* |
|
| LF.7.3 |
54 |
143 |
196.001218 |
171.264015 |
3.471970 |
7.474516e-47 |
|
* |
|
| |||||
PR.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| PR.2 |
20 |
151 |
10.538285 |
NaN |
NaN |
NaN |
* |
* |
* |
| EF.2 |
344 |
150 |
10.174713 |
8.379717 |
-10.759434 |
0.115325 |
* |
* |
|
| NY.6 |
30 |
151 |
9.535464 |
9.535464 |
-13.070928 |
0.366045 |
* |
* |
|
| LP.8.1.1 |
2345 |
151 |
8.446588 |
8.446588 |
-10.893177 |
0.123070 |
* |
* |
|
| EG.10.1 |
101 |
151 |
7.656183 |
7.656183 |
-9.312367 |
0.055855 |
* |
* |
|
| NY.13 |
463 |
150 |
7.250896 |
5.282981 |
-4.565963 |
0.005221 |
* |
* |
|
| XBB.1.5.30 |
317 |
151 |
5.902512 |
5.902512 |
-5.805024 |
0.009706 |
* |
* |
|
| LP.8.1 |
1124 |
150 |
5.776128 |
4.471992 |
-2.943983 |
0.002311 |
* |
* |
|
| BF.7.4 |
1716 |
151 |
5.002369 |
5.002369 |
-4.004739 |
0.003927 |
* |
* |
|
| MC.13 |
807 |
150 |
4.921771 |
4.895747 |
-3.791494 |
0.003535 |
* |
* |
|
|
Target sequence
, 106_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5911_T|C, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12885_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 14747_A|G, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27209_A|G, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28475_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29194_T|A, 29409_C|T, 29510_A|C, 29671_A|G, 29734_29759
Case 58 (XFG): BHR/25100013134/2025
| Target: 530 samples | Number of changes: 156 | |
| BC: LF.7 + PR.2 | BC BR: 153-154 | BC BR coord: 29412 - 29413 |
| Direction L1: >> | Initial region span: 1-134,154-156 | Gap history (edge excluded): 134-154 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.60e-08 | Rec. model vs L2: 7.59e-229 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
134 |
273.955316 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
134 |
260.226493 |
247.475452 |
-142.950903 |
1.206744e-05 |
* |
* |
|
| XFG.2 |
500 |
134 |
255.682029 |
237.143963 |
-122.287925 |
3.938701e-10 |
|
* |
|
| XFG.3.1 |
87 |
134 |
238.035180 |
225.208799 |
-98.417597 |
2.582548e-15 |
|
* |
|
| XFG.1 |
14 |
134 |
222.185044 |
209.534111 |
-67.068223 |
4.022373e-22 |
|
* |
|
| LF.7.7.1 |
188 |
134 |
204.751470 |
186.864095 |
-21.728191 |
5.741514e-32 |
|
* |
|
| LF.7.6 |
15 |
134 |
180.184030 |
144.700261 |
62.599478 |
2.798979e-50 |
|
* |
|
| LF.7.3 |
54 |
146 |
178.760913 |
154.023710 |
43.952580 |
3.139031e-46 |
|
|
|
| LF.7.1.8 |
44 |
134 |
176.589098 |
147.888976 |
56.222049 |
6.798279e-49 |
|
* |
|
| LF.7.1 |
165 |
134 |
173.280392 |
156.173883 |
39.652233 |
2.694814e-45 |
|
* |
|
| |||||
PR.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| PR.2 |
20 |
154 |
10.538285 |
NaN |
NaN |
NaN |
* |
* |
* |
| EF.2 |
344 |
153 |
10.174713 |
8.379717 |
-10.759434 |
0.115325 |
* |
* |
|
| NY.6 |
30 |
154 |
9.535464 |
9.535464 |
-13.070928 |
0.366045 |
* |
* |
|
| LP.8.1.1 |
2345 |
154 |
8.446588 |
8.446588 |
-10.893177 |
0.123070 |
* |
* |
|
| EG.10.1 |
101 |
154 |
7.656183 |
7.656183 |
-9.312367 |
0.055855 |
* |
* |
|
| NY.13 |
463 |
153 |
7.250896 |
5.282981 |
-4.565963 |
0.005221 |
* |
* |
|
| XBB.1.5.30 |
317 |
154 |
5.902512 |
5.902512 |
-5.805024 |
0.009706 |
* |
* |
|
| LP.8.1 |
1124 |
153 |
5.776128 |
4.471992 |
-2.943983 |
0.002311 |
* |
* |
|
| BF.7.4 |
1716 |
154 |
5.002369 |
5.002369 |
-4.004739 |
0.003927 |
* |
* |
|
| MC.13 |
807 |
153 |
4.921771 |
4.895747 |
-3.791494 |
0.003535 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2676_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4230_C|T, 4321_C|T, 5239_C|T, 5911_T|C, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 14747_A|G, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17637_A|G, 18163_A|G, 18326_C|T, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27209_A|G, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28475_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 28988_28993, 29409_C|T,
29510_A|C, 29671_A|G, 29734_29759
Case 58 (XFG): BHR/25020274266/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: XFG.3 + FY.1.4.1 + XFG.3 | BC BR: 131-132, 136-137 | BC BR coord: 26872 - 26873, 27387 - 27388 |
| Direction L1: >> | Initial region span: 1-131,132-136,138-152 | Gap history (edge excluded): 131-138 -> 136-138 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.97e-01 | |
| Rec. model vs L1: 2.86e-08 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
131 |
290.226493 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
131 |
289.964059 |
281.681666 |
-227.363333 |
7.171897e-02 |
* |
* |
|
| XFG.2 |
500 |
131 |
273.151789 |
267.357038 |
-198.714076 |
4.308892e-08 |
|
* |
|
| XFG.3.1 |
87 |
131 |
268.035180 |
261.461788 |
-186.923576 |
1.186314e-10 |
|
* |
|
| XFG.1 |
14 |
131 |
252.185044 |
246.515339 |
-157.030678 |
3.834145e-17 |
|
* |
|
| LF.7.7.1 |
188 |
131 |
220.837599 |
205.793623 |
-75.587245 |
7.928614e-35 |
|
* |
|
| LF.7.6 |
15 |
131 |
210.184030 |
188.345024 |
-40.690048 |
2.092949e-42 |
|
* |
|
| LF.7.3 |
54 |
143 |
208.760913 |
190.967197 |
-45.934395 |
2.874816e-41 |
|
|
|
| LF.7.1.8 |
44 |
131 |
206.589098 |
184.696931 |
-33.393863 |
5.439810e-44 |
|
* |
|
| LF.7.1 |
165 |
131 |
203.280392 |
193.079604 |
-50.159207 |
2.383104e-40 |
|
* |
|
| |||||
FY.1.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| FY.1.4.1 |
41 |
136 |
13.108949 |
NaN |
NaN |
NaN |
* |
* |
* |
| GS.7 |
16 |
136 |
11.905952 |
11.905952 |
-13.811904 |
0.299692 |
* |
* |
|
| JY.1.1 |
42 |
136 |
11.005410 |
11.005410 |
-12.010820 |
0.121846 |
* |
* |
|
| XBB.1.22 |
77 |
136 |
10.399274 |
10.399274 |
-10.798548 |
0.066537 |
* |
* |
|
| BA.2.32 |
367 |
136 |
9.922672 |
9.922672 |
-9.845345 |
0.041378 |
* |
* |
|
| GV.1 |
137 |
136 |
9.823099 |
9.823099 |
-9.646197 |
0.037441 |
* |
* |
|
| XBB.1.5.46 |
613 |
136 |
9.547214 |
9.547214 |
-9.094428 |
0.028297 |
* |
* |
|
| XBB.1.16.15 |
1675 |
137 |
9.529018 |
8.412148 |
-6.824296 |
0.009095 |
* |
* |
|
| XBB.1.5.10 |
817 |
137 |
9.164369 |
8.022716 |
-6.045433 |
0.006189 |
* |
* |
|
| LP.8.1 |
1124 |
137 |
8.534839 |
7.712197 |
-5.424393 |
0.004517 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
138 |
4.08917 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5911_T|C, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 14747_A|G,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18326_C|T, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27209_A|G, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28475_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29671_A|G, 29734_29759
Case 58 (XFG): BHR/25280014848/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: LF.7 + LP.8.1.1 | BC BR: 142-143 | BC BR coord: 28311 - 28312 |
| Direction L1: >> | Initial region span: 1-142,146-153 | Gap history (edge excluded): 142-146 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.27e-05 | Rec. model vs L2: 4.91e-171 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
142 |
301.218402 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
142 |
294.117659 |
294.117659 |
-264.235319 |
8.251049e-04 |
* |
* |
|
| XFG.2 |
500 |
144 |
269.959325 |
268.429152 |
-212.858304 |
5.747566e-15 |
|
|
|
| XFG.3.1 |
87 |
142 |
263.316547 |
263.316547 |
-202.633093 |
3.451975e-17 |
|
* |
|
| XFG.1 |
14 |
142 |
247.466411 |
247.466411 |
-170.932822 |
4.513362e-24 |
|
* |
|
| LF.7.7.1 |
188 |
142 |
213.480793 |
213.480793 |
-102.961587 |
7.852395e-39 |
|
* |
|
| LF.7.1.4 |
12 |
142 |
206.562754 |
206.562754 |
-89.125508 |
7.795713e-42 |
|
* |
|
| LF.7.6 |
15 |
142 |
205.465397 |
205.465397 |
-86.930793 |
2.594967e-42 |
|
* |
|
| LF.7.1.8 |
44 |
142 |
201.847475 |
201.847475 |
-79.694950 |
6.950017e-44 |
|
* |
|
| LF.7.1 |
165 |
144 |
201.180062 |
198.561759 |
-73.123519 |
2.602127e-45 |
|
|
|
| |||||
LP.8.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1.1 |
2345 |
146 |
12.668692 |
NaN |
NaN |
NaN |
* |
* |
* |
| NY.13 |
463 |
146 |
12.513693 |
-6.716280 |
41.432561 |
8.607080e-01 |
* |
* |
|
| LP.8.1 |
1124 |
146 |
11.038925 |
-8.198516 |
44.397031 |
1.949524e-01 |
* |
* |
|
| PR.2 |
20 |
151 |
10.538285 |
-13.420215 |
54.840429 |
1.054172e-03 |
* |
|
|
| MC.13 |
807 |
146 |
10.184567 |
-9.052969 |
46.105939 |
8.290997e-02 |
* |
* |
|
| EF.2 |
344 |
150 |
10.174713 |
-24.572325 |
77.144651 |
1.515402e-08 |
|
|
|
| NY.6 |
30 |
151 |
9.535464 |
-14.423036 |
56.846072 |
3.858739e-04 |
* |
|
|
| EG.10.1 |
101 |
151 |
7.656183 |
-37.296826 |
102.593651 |
4.509523e-14 |
|
|
|
| KP.3.1.1 |
12013 |
146 |
6.638411 |
-12.606640 |
53.213280 |
2.381559e-03 |
* |
* |
|
| XBB.1.5.30 |
317 |
151 |
5.902512 |
-31.680096 |
91.360192 |
1.237924e-11 |
|
|
|
|
Target sequence
, 241_C|T, 509_523, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5911_T|C, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
14747_A|G, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23148_A|G, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27209_A|G, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28313_C|T, 28362_28370, 28475_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29671_A|G, 29734_29759
Case 58 (XFG): BHR/25280016045/2025
| Target: 530 samples | Number of changes: 156 | |
| BC: LF.7 + PR.2 | BC BR: 153-154 | BC BR coord: 29412 - 29413 |
| Direction L1: >> | Initial region span: 1-133,154-156 | Gap history (edge excluded): 133-154 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.60e-08 | Rec. model vs L2: 7.59e-229 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
133 |
283.955316 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
133 |
270.226493 |
247.475452 |
-142.950903 |
1.206744e-05 |
* |
* |
|
| XFG.2 |
500 |
133 |
265.682029 |
237.143963 |
-122.287925 |
3.938701e-10 |
|
* |
|
| XFG.3.1 |
87 |
133 |
248.035180 |
225.208799 |
-98.417597 |
2.582548e-15 |
|
* |
|
| XFG.1 |
14 |
133 |
232.185044 |
209.534111 |
-67.068223 |
4.022373e-22 |
|
* |
|
| LF.7.7.1 |
188 |
133 |
214.751470 |
186.864095 |
-21.728191 |
5.741514e-32 |
|
* |
|
| LF.7.6 |
15 |
133 |
190.184030 |
161.171016 |
29.657969 |
3.979511e-43 |
|
* |
|
| LF.7.3 |
54 |
145 |
188.760913 |
154.023710 |
43.952580 |
3.139031e-46 |
|
|
|
| LF.7.1.8 |
44 |
133 |
186.589098 |
147.888976 |
56.222049 |
6.798279e-49 |
|
* |
|
| LF.7.1 |
165 |
133 |
183.280392 |
156.173883 |
39.652233 |
2.694814e-45 |
|
* |
|
| |||||
PR.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| PR.2 |
20 |
154 |
10.538285 |
NaN |
NaN |
NaN |
* |
* |
* |
| EF.2 |
344 |
153 |
10.174713 |
8.379717 |
-10.759434 |
0.115325 |
* |
* |
|
| NY.6 |
30 |
154 |
9.535464 |
9.535464 |
-13.070928 |
0.366045 |
* |
* |
|
| LP.8.1.1 |
2345 |
154 |
8.446588 |
8.446588 |
-10.893177 |
0.123070 |
* |
* |
|
| EG.10.1 |
101 |
154 |
7.656183 |
7.656183 |
-9.312367 |
0.055855 |
* |
* |
|
| NY.13 |
463 |
153 |
7.250896 |
5.282981 |
-4.565963 |
0.005221 |
* |
* |
|
| XBB.1.5.30 |
317 |
154 |
5.902512 |
5.902512 |
-5.805024 |
0.009706 |
* |
* |
|
| LP.8.1 |
1124 |
153 |
5.776128 |
4.471992 |
-2.943983 |
0.002311 |
* |
* |
|
| BF.7.4 |
1716 |
154 |
5.002369 |
5.002369 |
-4.004739 |
0.003927 |
* |
* |
|
| MC.13 |
807 |
153 |
4.921771 |
4.895747 |
-3.791494 |
0.003535 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2676_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5911_T|C, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
14747_A|G, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17637_A|G, 18163_A|G, 18326_C|T, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27209_A|G, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28475_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 28988_28993, 29041_G|A, 29409_C|T,
29510_A|C, 29671_A|G, 29734_29759
Case 58 (XFG): BHR/25280016706/2025
| Target: 530 samples | Number of changes: 151 | |
| BC: JN.1.8.1 + LF.7 | BC BR: 5-6 | BC BR coord: 941 - 942 |
| Direction L1: << | Initial region span: 1-5,6-151 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.97e-131 | Rec. model vs L2: 1.42e-14 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.8.1 |
1498 |
5 |
8.870164 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.8.2 |
17 |
4 |
8.566187 |
-1.433813 |
12.867625 |
0.000033 |
* |
* |
|
| JN.2.3 |
36 |
4 |
8.407135 |
-1.592865 |
13.185731 |
0.000029 |
* |
* |
|
| MC.28.1 |
17 |
4 |
7.771146 |
-2.228854 |
14.457708 |
0.000015 |
* |
* |
|
| JN.3 |
321 |
4 |
7.761717 |
-2.238283 |
14.476565 |
0.000015 |
* |
* |
|
| JN.1.8 |
352 |
4 |
7.726793 |
-2.273207 |
14.546415 |
0.000014 |
* |
* |
|
| LZ.2.1 |
10 |
4 |
7.608627 |
-2.391373 |
14.782746 |
0.000013 |
* |
* |
|
| MC.17.1 |
10 |
4 |
7.608627 |
-2.391373 |
14.782746 |
0.000013 |
* |
* |
|
| JN.1.28.1 |
11 |
4 |
7.513317 |
-2.486683 |
14.973366 |
0.000012 |
* |
* |
|
| LD.1.1 |
11 |
4 |
7.513317 |
-2.486683 |
14.973366 |
0.000012 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
6 |
315.993193 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
6 |
315.966793 |
315.966793 |
-293.933586 |
9.704455e-01 |
* |
* |
|
| XFG.2 |
500 |
6 |
311.198751 |
303.660121 |
-269.320242 |
4.395189e-06 |
|
* |
|
| XFG.3.1 |
87 |
6 |
282.157898 |
282.157898 |
-226.315796 |
2.021372e-15 |
|
* |
|
| XFG.1 |
14 |
6 |
267.211449 |
267.211449 |
-196.422899 |
6.500454e-22 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
236.949787 |
231.441999 |
-124.883998 |
1.897711e-37 |
|
|
|
| LF.7.1 |
165 |
28 |
234.778805 |
224.430262 |
-110.860524 |
1.713270e-40 |
|
|
|
| LF.7.7.1 |
188 |
31 |
224.840478 |
206.726282 |
-75.452563 |
3.504628e-48 |
|
|
|
| LF.7.6 |
15 |
3 |
212.619381 |
202.234498 |
-66.468997 |
3.932419e-50 |
|
|
|
| LF.7.1.2 |
26 |
28 |
206.014702 |
195.612183 |
-53.224366 |
5.217456e-53 |
|
|
|
|
Target sequence
, 241_C|T, 510_518, 670_T|G, 897_C|A, 936_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7164_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9079_A|G, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ263366
| Target: 530 samples | Number of changes: 155 | |
| BC: NM.2 + XFG.3 | BC BR: 6-7 | BC BR coord: 3037 - 3038 |
| Direction L1: << | Initial region span: 1-6,8-155 | Gap history (edge excluded): 6-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.16e-252 | Rec. model vs L2: 5.69e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
NM.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NM.2 |
28 |
6 |
11.733311 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.7 |
57 |
6 |
11.559075 |
11.559075 |
-9.118150 |
0.839457 |
* |
* |
|
| KP.2.24 |
44 |
6 |
10.665037 |
10.665037 |
-7.330075 |
0.343009 |
* |
* |
|
| MC.14 |
35 |
6 |
10.458940 |
10.458940 |
-6.917881 |
0.279431 |
* |
* |
|
| KP.2.3.13 |
25 |
6 |
9.649415 |
9.649415 |
-5.298830 |
0.124307 |
* |
* |
|
| KP.3.4 |
62 |
6 |
9.012578 |
9.012578 |
-4.025156 |
0.065875 |
* |
* |
|
| JN.1.69 |
32 |
6 |
8.997090 |
8.997090 |
-3.994179 |
0.064570 |
* |
* |
|
| JN.1.18.5 |
37 |
6 |
8.851908 |
8.851908 |
-3.703815 |
0.055855 |
* |
* |
|
| JN.1.1.6 |
13 |
4 |
8.123635 |
1.960207 |
10.079587 |
0.000057 |
* |
|
|
| KP.2.11 |
40 |
6 |
8.080799 |
8.080799 |
-2.161598 |
0.025861 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
285.679194 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
8 |
256.490665 |
246.490665 |
-142.981330 |
2.103508e-13 |
|
* |
|
| LF.7 |
58 |
8 |
250.998680 |
240.998680 |
-131.997360 |
8.682951e-16 |
|
* |
|
| XFG.3.1 |
87 |
8 |
218.998816 |
208.998816 |
-67.997631 |
1.099623e-29 |
|
* |
|
| XFG.1 |
14 |
8 |
201.981146 |
191.981146 |
-33.962292 |
4.462229e-37 |
|
* |
|
| LF.7.1 |
165 |
21 |
192.943420 |
169.563639 |
10.872723 |
8.219418e-47 |
|
|
|
| LF.7.7.1 |
188 |
35 |
168.118663 |
136.953669 |
76.092663 |
5.655851e-61 |
|
|
|
| LF.7.1.8 |
44 |
21 |
165.926387 |
142.524551 |
64.950898 |
1.484288e-58 |
|
|
|
| LF.7.7.2 |
239 |
21 |
155.215357 |
122.565540 |
104.868919 |
3.184200e-67 |
|
|
|
| LF.7.3 |
54 |
21 |
154.493004 |
136.742675 |
76.514650 |
4.584544e-61 |
|
|
|
|
Target sequence
, 106_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3172_T|C, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5581_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8278_T|C, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12534_C|T, 12788_A|G, 12789_C|T, 12815_C|T,
12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 14568_T|A, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19518_G|T, 19955_C|T, 20055_A|G, 20178_C|T,
21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21762_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A,
22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26769_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 27923_C|T, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C,
28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ263370
| Target: 530 samples | Number of changes: 150 | |
| BC: XFG.3 + LU.2.1.1 + XFG.3 | BC BR: 7-8, 9-10 | BC BR coord: 3566 - 3567, 4188 - 4189 |
| Direction L1: << | Initial region span: 1-7,8-9,11-150 | Gap history (edge excluded): 7-11 -> 9-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.67e-02 | |
| Rec. model vs L1: 2.74e-07 | Rec. model vs L2: 6.37e-221 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
12.929009 |
None |
None |
None |
* |
* |
* |
| |||||
LU.2.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LU.2.1.1 |
49 |
9 |
7.467971 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.36 |
49 |
9 |
7.467971 |
7.467971 |
-10.935941 |
1.000000 |
* |
* |
|
| XBB.1.5.86 |
101 |
9 |
6.744670 |
6.744670 |
-9.489341 |
0.484325 |
* |
* |
|
| FL.13 |
151 |
9 |
6.342511 |
6.342511 |
-8.685022 |
0.324652 |
* |
* |
|
| XBB.2.3 |
695 |
9 |
6.202173 |
6.202173 |
-8.404347 |
0.280832 |
* |
* |
|
| BA.1.21.1 |
65 |
8 |
6.108827 |
-3.891173 |
11.782347 |
0.000012 |
* |
* |
|
| BA.5.1.2 |
2225 |
9 |
4.344527 |
4.344527 |
-4.689053 |
0.043937 |
* |
* |
|
| B.1.1.25 |
541 |
8 |
3.989795 |
-6.010205 |
16.020411 |
0.000001 |
|
* |
|
| EG.5.1.4 |
1717 |
9 |
3.911457 |
3.911457 |
-3.822914 |
0.028439 |
* |
* |
|
| BA.5.2 |
49968 |
9 |
3.872117 |
3.872117 |
-3.744233 |
0.027324 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
11 |
316.228088 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
11 |
304.248505 |
307.214112 |
-274.428224 |
6.524149e-06 |
|
* |
|
| XFG.2 |
500 |
11 |
299.421298 |
302.413148 |
-264.826297 |
5.369210e-08 |
|
* |
|
| XFG.3.1 |
87 |
11 |
272.334253 |
275.208518 |
-210.417036 |
8.221082e-20 |
|
* |
|
| XFG.1 |
14 |
11 |
255.177861 |
258.213970 |
-176.427940 |
3.420537e-27 |
|
* |
|
| LF.7.1 |
165 |
12 |
222.566038 |
215.553253 |
-91.106506 |
1.016463e-45 |
|
* |
|
| LF.7.7.1 |
188 |
12 |
218.986556 |
211.957879 |
-83.915759 |
2.791277e-47 |
|
* |
|
| LF.7.1.8 |
44 |
12 |
215.721266 |
208.687865 |
-77.375731 |
1.060865e-48 |
|
* |
|
| LF.7.6 |
15 |
12 |
200.487112 |
193.523220 |
-47.046441 |
2.751593e-55 |
|
* |
|
| LF.7.3 |
54 |
12 |
197.040048 |
190.000306 |
-40.000612 |
8.103939e-57 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4206_C|T, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16394_C|T, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28805_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ263399
| Target: 530 samples | Number of changes: 151 | |
| BC: XFG.3 + XBB.2.3 + XFG.3 | BC BR: 7-8, 10-11 | BC BR coord: 3566 - 3567, 4205 - 4206 |
| Direction L1: << | Initial region span: 1-7,8-10,12-151 | Gap history (edge excluded): 7-12 -> 10-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.48e-08 | |
| Rec. model vs L1: 4.63e-13 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
12.929009 |
None |
None |
None |
* |
* |
* |
| |||||
XBB.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XBB.2.3 |
695 |
10 |
10.740845 |
NaN |
NaN |
NaN |
* |
* |
* |
| LU.2.1.1 |
49 |
9 |
7.467971 |
-2.532029 |
11.064059 |
1.725489e-06 |
|
* |
|
| MC.36 |
49 |
9 |
7.467971 |
-2.532029 |
11.064059 |
1.725489e-06 |
|
* |
|
| XBB.1.5.86 |
101 |
9 |
6.744670 |
-3.255330 |
12.510659 |
8.356968e-07 |
|
* |
|
| FL.13 |
151 |
9 |
6.342511 |
-3.657489 |
13.314978 |
5.601843e-07 |
|
* |
|
| BA.1.21.1 |
65 |
8 |
6.108827 |
-13.891173 |
33.782347 |
2.010606e-11 |
|
|
|
| BA.5.1.2 |
2225 |
9 |
4.344527 |
-5.655473 |
17.310947 |
7.581270e-08 |
|
* |
|
| B.1.1.25 |
541 |
8 |
3.989795 |
-16.010205 |
38.020411 |
2.413363e-12 |
|
|
|
| EG.5.1.4 |
1717 |
9 |
3.911457 |
-6.088543 |
18.177086 |
4.907088e-08 |
|
* |
|
| BA.5.2 |
49968 |
9 |
3.872117 |
-6.127883 |
18.255767 |
4.714679e-08 |
|
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
12 |
316.228088 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
12 |
304.248505 |
307.214112 |
-274.428224 |
6.524149e-06 |
|
* |
|
| XFG.2 |
500 |
12 |
299.421298 |
302.413148 |
-264.826297 |
5.369210e-08 |
|
* |
|
| XFG.3.1 |
87 |
12 |
272.334253 |
275.208518 |
-210.417036 |
8.221082e-20 |
|
* |
|
| XFG.1 |
14 |
12 |
255.177861 |
258.213970 |
-176.427940 |
3.420537e-27 |
|
* |
|
| LF.7.1 |
165 |
13 |
222.566038 |
215.553253 |
-91.106506 |
1.016463e-45 |
|
* |
|
| LF.7.7.1 |
188 |
13 |
218.986556 |
211.957879 |
-83.915759 |
2.791277e-47 |
|
* |
|
| LF.7.1.8 |
44 |
13 |
215.721266 |
208.687865 |
-77.375731 |
1.060865e-48 |
|
* |
|
| LF.7.6 |
15 |
13 |
200.487112 |
193.523220 |
-47.046441 |
2.751593e-55 |
|
* |
|
| LF.7.3 |
54 |
13 |
197.040048 |
190.000306 |
-40.000612 |
8.103939e-57 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4205_G|T, 4206_C|T, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16394_C|T, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28805_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ271485
| Target: 530 samples | Number of changes: 136 | |
| BC: XFG.3.1 + LF.7.7.1 + XFG.3.1 | BC BR: 10-11, 14-15 | BC BR coord: 4330 - 4331, 7841 - 7842 |
| Direction L1: << | Initial region span: 1-10,12-14,15-136 | Gap history (edge excluded): 10-15 -> 10-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.25e-03 | |
| Rec. model vs L1: 2.18e-15 | Rec. model vs L2: 2.10e-60 | |
| Flags: Model_2BP_Best | | |
XFG.3.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3.1 |
87 |
10 |
5.990321 |
None |
None |
None |
* |
* |
* |
| |||||
LF.7.7.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.7.1 |
188 |
12 |
15.074492 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.41 |
121 |
13 |
9.369512 |
-10.630488 |
43.260977 |
1.511490e-07 |
|
* |
|
| B.1.587 |
60 |
14 |
6.461167 |
-42.454172 |
106.908344 |
2.280254e-21 |
|
|
|
| BA.1.13 |
393 |
14 |
4.581702 |
-29.556660 |
81.113320 |
9.128136e-16 |
|
|
|
| A.2.5 |
513 |
14 |
4.315235 |
-48.475964 |
118.951927 |
5.540264e-24 |
|
|
|
| P.2 |
983 |
14 |
3.664902 |
-9.262281 |
40.524562 |
5.948242e-07 |
|
|
|
| BE.1.4 |
990 |
14 |
3.657806 |
-26.342194 |
74.684388 |
2.273206e-14 |
|
|
|
| B.1.595 |
1332 |
14 |
3.361074 |
-26.638926 |
75.277851 |
1.684033e-14 |
|
|
|
| BA.5.1.22 |
4997 |
14 |
3.137530 |
-12.348473 |
46.696947 |
2.706566e-08 |
|
|
|
| BQ.1.14 |
1843 |
14 |
3.036361 |
-26.963639 |
75.927278 |
1.216760e-14 |
|
|
|
| |||||
XFG.3.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3.1 |
87 |
15 |
261.526954 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
5 |
249.636789 |
254.612995 |
-183.225991 |
2.498050e-06 |
|
|
|
| LF.7 |
58 |
15 |
245.337818 |
249.087481 |
-172.174961 |
9.907240e-09 |
|
* |
|
| XFG.2 |
500 |
15 |
237.198082 |
242.988315 |
-159.976631 |
2.233201e-11 |
|
* |
|
| XFG.1 |
14 |
15 |
214.250354 |
220.078832 |
-114.157664 |
2.507502e-21 |
|
* |
|
| LF.7.7.1 |
188 |
12 |
188.225685 |
160.951726 |
4.096548 |
5.240932e-47 |
|
|
|
| LF.7.3.1 |
26 |
15 |
178.158771 |
166.018755 |
-6.037510 |
8.342218e-45 |
|
* |
|
| LF.7.1 |
165 |
15 |
177.393614 |
165.241403 |
-4.482806 |
3.824123e-45 |
|
* |
|
| LF.7.1.8 |
44 |
15 |
168.438655 |
156.229129 |
13.541741 |
4.672385e-49 |
|
* |
|
| LF.7.9 |
20 |
15 |
164.433830 |
152.399175 |
21.201650 |
1.014357e-50 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1784_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4214_T|C, 4321_C|T, 4354_G|A, 5239_C|T, 6183_A|G, 6643_T|C, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28372_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ272392
| Target: 530 samples | Number of changes: 149 | |
| BC: XFG.3 + LU.2.1.1 + XFG.3 | BC BR: 7-8, 9-10 | BC BR coord: 3566 - 3567, 4188 - 4189 |
| Direction L1: << | Initial region span: 1-7,8-9,11-149 | Gap history (edge excluded): 7-11 -> 9-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.67e-02 | |
| Rec. model vs L1: 2.74e-07 | Rec. model vs L2: 6.30e-221 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
12.929009 |
None |
None |
None |
* |
* |
* |
| |||||
LU.2.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LU.2.1.1 |
49 |
9 |
7.467971 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.36 |
49 |
9 |
7.467971 |
7.467971 |
-10.935941 |
1.000000 |
* |
* |
|
| XBB.1.5.86 |
101 |
9 |
6.744670 |
6.744670 |
-9.489341 |
0.484325 |
* |
* |
|
| FL.13 |
151 |
9 |
6.342511 |
6.342511 |
-8.685022 |
0.324652 |
* |
* |
|
| XBB.2.3 |
695 |
9 |
6.202173 |
6.202173 |
-8.404347 |
0.280832 |
* |
* |
|
| BA.1.21.1 |
65 |
8 |
6.108827 |
-3.891173 |
11.782347 |
0.000012 |
* |
* |
|
| BA.5.1.2 |
2225 |
9 |
4.344527 |
4.344527 |
-4.689053 |
0.043937 |
* |
* |
|
| B.1.1.25 |
541 |
8 |
3.989795 |
-6.010205 |
16.020411 |
0.000001 |
|
* |
|
| EG.5.1.4 |
1717 |
9 |
3.911457 |
3.911457 |
-3.822914 |
0.028439 |
* |
* |
|
| BA.5.2 |
49968 |
9 |
3.872117 |
3.872117 |
-3.744233 |
0.027324 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
11 |
314.726951 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
11 |
302.739018 |
305.704624 |
-271.409249 |
6.459233e-06 |
|
* |
|
| XFG.2 |
500 |
11 |
297.915815 |
300.907665 |
-261.815330 |
5.342431e-08 |
|
* |
|
| XFG.3.1 |
87 |
11 |
270.847887 |
273.722152 |
-207.444304 |
8.303705e-20 |
|
* |
|
| XFG.1 |
14 |
11 |
253.668374 |
256.704482 |
-173.408964 |
3.386502e-27 |
|
* |
|
| LF.7.1 |
165 |
12 |
221.056551 |
214.043766 |
-88.087531 |
1.006349e-45 |
|
* |
|
| LF.7.7.1 |
188 |
12 |
217.477068 |
210.448392 |
-80.896784 |
2.763504e-47 |
|
* |
|
| LF.7.1.8 |
44 |
12 |
214.211779 |
207.178378 |
-74.356755 |
1.050309e-48 |
|
* |
|
| LF.7.6 |
15 |
12 |
198.977624 |
192.013733 |
-44.027466 |
2.724214e-55 |
|
* |
|
| LF.7.3 |
54 |
12 |
195.530560 |
188.490818 |
-36.981636 |
8.023304e-57 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4206_C|T, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16394_C|T, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28805_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ263370
| Target: 530 samples | Number of changes: 150 | |
| BC: XFG.3 + LU.2.1.1 + XFG.3 | BC BR: 7-8, 9-10 | BC BR coord: 3566 - 3567, 4188 - 4189 |
| Direction L1: << | Initial region span: 1-7,8-9,11-150 | Gap history (edge excluded): 7-11 -> 9-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.67e-02 | |
| Rec. model vs L1: 2.74e-07 | Rec. model vs L2: 6.37e-221 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
12.929009 |
None |
None |
None |
* |
* |
* |
| |||||
LU.2.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LU.2.1.1 |
49 |
9 |
7.467971 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.36 |
49 |
9 |
7.467971 |
7.467971 |
-10.935941 |
1.000000 |
* |
* |
|
| XBB.1.5.86 |
101 |
9 |
6.744670 |
6.744670 |
-9.489341 |
0.484325 |
* |
* |
|
| FL.13 |
151 |
9 |
6.342511 |
6.342511 |
-8.685022 |
0.324652 |
* |
* |
|
| XBB.2.3 |
695 |
9 |
6.202173 |
6.202173 |
-8.404347 |
0.280832 |
* |
* |
|
| BA.1.21.1 |
65 |
8 |
6.108827 |
-3.891173 |
11.782347 |
0.000012 |
* |
* |
|
| BA.5.1.2 |
2225 |
9 |
4.344527 |
4.344527 |
-4.689053 |
0.043937 |
* |
* |
|
| B.1.1.25 |
541 |
8 |
3.989795 |
-6.010205 |
16.020411 |
0.000001 |
|
* |
|
| EG.5.1.4 |
1717 |
9 |
3.911457 |
3.911457 |
-3.822914 |
0.028439 |
* |
* |
|
| BA.5.2 |
49968 |
9 |
3.872117 |
3.872117 |
-3.744233 |
0.027324 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
11 |
316.228088 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
11 |
304.248505 |
307.214112 |
-274.428224 |
6.524149e-06 |
|
* |
|
| XFG.2 |
500 |
11 |
299.421298 |
302.413148 |
-264.826297 |
5.369210e-08 |
|
* |
|
| XFG.3.1 |
87 |
11 |
272.334253 |
275.208518 |
-210.417036 |
8.221082e-20 |
|
* |
|
| XFG.1 |
14 |
11 |
255.177861 |
258.213970 |
-176.427940 |
3.420537e-27 |
|
* |
|
| LF.7.1 |
165 |
12 |
222.566038 |
215.553253 |
-91.106506 |
1.016463e-45 |
|
* |
|
| LF.7.7.1 |
188 |
12 |
218.986556 |
211.957879 |
-83.915759 |
2.791277e-47 |
|
* |
|
| LF.7.1.8 |
44 |
12 |
215.721266 |
208.687865 |
-77.375731 |
1.060865e-48 |
|
* |
|
| LF.7.6 |
15 |
12 |
200.487112 |
193.523220 |
-47.046441 |
2.751593e-55 |
|
* |
|
| LF.7.3 |
54 |
12 |
197.040048 |
190.000306 |
-40.000612 |
8.103939e-57 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4206_C|T, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16394_C|T, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28805_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ276205
| Target: 530 samples | Number of changes: 154 | |
| BC: XFG.3 + LU.2.1.1 + XFG.3 | BC BR: 9-10, 11-12 | BC BR coord: 3566 - 3567, 4188 - 4189 |
| Direction L1: << | Initial region span: 1-9,10-11,13-154 | Gap history (edge excluded): 9-13 -> 11-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.37e-06 | |
| Rec. model vs L1: 2.74e-07 | Rec. model vs L2: 4.42e-223 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
17.865815 |
None |
None |
None |
* |
* |
* |
| |||||
LU.2.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LU.2.1.1 |
49 |
11 |
7.467971 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.36 |
49 |
11 |
7.467971 |
7.467971 |
-10.935941 |
1.000000 |
* |
* |
|
| XBB.1.5.86 |
101 |
11 |
6.744670 |
6.744670 |
-9.489341 |
0.484325 |
* |
* |
|
| FL.13 |
151 |
11 |
6.342511 |
6.342511 |
-8.685022 |
0.324652 |
* |
* |
|
| XBB.2.3 |
695 |
11 |
6.202173 |
6.202173 |
-8.404347 |
0.280832 |
* |
* |
|
| BA.1.21.1 |
65 |
10 |
6.108827 |
-3.891173 |
11.782347 |
0.000012 |
* |
* |
|
| BA.5.1.2 |
2225 |
11 |
4.344527 |
4.344527 |
-4.689053 |
0.043937 |
* |
* |
|
| B.1.1.25 |
541 |
10 |
3.989795 |
-6.010205 |
16.020411 |
0.000001 |
|
* |
|
| EG.5.1.4 |
1717 |
11 |
3.911457 |
3.911457 |
-3.822914 |
0.028439 |
* |
* |
|
| BA.5.2 |
49968 |
11 |
3.872117 |
3.872117 |
-3.744233 |
0.027324 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
13 |
293.481844 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
13 |
279.815429 |
287.949524 |
-227.899047 |
1.515144e-06 |
|
* |
|
| XFG.2 |
500 |
13 |
276.065493 |
281.917806 |
-215.835611 |
3.644670e-09 |
|
* |
|
| XFG.3.1 |
87 |
13 |
263.968420 |
270.792602 |
-193.585203 |
5.371952e-14 |
|
* |
|
| XFG.1 |
14 |
13 |
230.366719 |
236.669155 |
-125.338309 |
8.125178e-29 |
|
* |
|
| LF.7.1 |
165 |
14 |
197.954595 |
195.098146 |
-42.196291 |
7.181436e-47 |
|
* |
|
| LF.7.7.1 |
188 |
14 |
189.187922 |
185.381201 |
-22.762401 |
4.313889e-51 |
|
* |
|
| LF.7.1.8 |
44 |
14 |
177.294123 |
172.846222 |
2.307556 |
1.552343e-56 |
|
* |
|
| LF.7.6 |
15 |
14 |
176.200698 |
173.686904 |
0.626193 |
3.595795e-56 |
|
* |
|
| LF.7.3 |
54 |
14 |
173.078672 |
169.208093 |
9.583814 |
4.095691e-58 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4206_C|T, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16394_C|T, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26842_G|A, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28005_C|T, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28805_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): OZ277109
| Target: 530 samples | Number of changes: 155 | |
| BC: XFG.3 + KP.4.1.1 + XFG.3 | BC BR: 3-4, 7-8 | BC BR coord: 241 - 242, 2789 - 2790 |
| Direction L1: << | Initial region span: 1-3,5-7,8-155 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.89e-02 | |
| Rec. model vs L1: 1.32e-08 | Rec. model vs L2: 5.57e-212 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.941372 |
None |
None |
None |
* |
* |
* |
| |||||
KP.4.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.4.1.1 |
12 |
5 |
9.890930 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.13 |
15 |
5 |
9.156961 |
-0.843039 |
11.686078 |
0.479505 |
* |
* |
|
| MC.33 |
31 |
5 |
8.718706 |
-1.281294 |
12.562588 |
0.310367 |
* |
* |
|
| MD.1 |
19 |
5 |
7.821960 |
-2.178040 |
14.356080 |
0.126186 |
* |
* |
|
| KP.2 |
1589 |
4 |
7.812810 |
7.812810 |
-5.625620 |
2765.564355 |
* |
* |
|
| MC.36.2 |
24 |
6 |
7.600059 |
-10.920705 |
31.841410 |
0.000020 |
* |
* |
|
| KP.2.3.13 |
25 |
5 |
7.547523 |
-2.452477 |
14.904954 |
0.096328 |
* |
* |
|
| XFJ.1 |
59 |
5 |
7.330428 |
-2.669572 |
15.339144 |
0.077305 |
* |
* |
|
| LF.9 |
48 |
5 |
6.874145 |
-3.125855 |
16.251711 |
0.049046 |
* |
* |
|
| LB.1.7.1 |
97 |
5 |
6.864110 |
-3.135890 |
16.271781 |
0.048558 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
307.334080 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
8 |
295.723596 |
300.896650 |
-249.793300 |
1.142165e-05 |
* |
* |
|
| XFG.2 |
500 |
8 |
281.982221 |
284.845246 |
-217.690493 |
1.222651e-12 |
|
* |
|
| XFG.3.1 |
87 |
8 |
275.096664 |
279.051146 |
-206.102293 |
3.720196e-15 |
|
* |
|
| XFG.1 |
14 |
11 |
256.109583 |
250.461570 |
-148.923141 |
1.425892e-27 |
|
|
|
| LF.7.1 |
165 |
17 |
224.704626 |
209.311326 |
-66.622651 |
1.918089e-45 |
|
|
|
| LF.7.7.1 |
188 |
17 |
215.542400 |
190.391563 |
-28.783126 |
1.164172e-53 |
|
|
|
| LF.7.6 |
15 |
17 |
202.560510 |
187.479320 |
-22.958639 |
6.341911e-55 |
|
|
|
| LF.7.3 |
54 |
17 |
199.324167 |
194.336739 |
-36.673478 |
6.016014e-52 |
|
|
|
| LF.7.2.1 |
67 |
17 |
195.749346 |
180.075747 |
-8.151494 |
3.857176e-58 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3096_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G,
7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11187_T|C, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T,
12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15613_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25613_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): OZ277275
| Target: 530 samples | Number of changes: 155 | |
| BC: LB.1.3 + LF.7 | BC BR: 7-8 | BC BR coord: 685 - 686 |
| Direction L1: << | Initial region span: 1-3,8-155 | Gap history (edge excluded): 3-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.97e-142 | Rec. model vs L2: 6.86e-12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LB.1.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LB.1.3 |
778 |
3 |
8.908186 |
NaN |
NaN |
NaN |
* |
* |
* |
| FL.2.3 |
614 |
3 |
4.892847 |
-17.217623 |
50.435246 |
3.305807e-08 |
|
* |
|
| XBB.1.5.13 |
2132 |
4 |
2.404054 |
-0.688856 |
17.377713 |
4.990744e-01 |
* |
* |
|
| BA.4.6 |
19369 |
6 |
1.969609 |
-8.030391 |
32.060781 |
3.239245e-04 |
* |
|
|
| BA.5.1 |
53705 |
7 |
1.728110 |
1.728110 |
12.543781 |
5.612521e+00 |
* |
|
|
| BA.4 |
10442 |
6 |
0.589038 |
-9.410962 |
34.821924 |
8.149246e-05 |
* |
|
|
| BA.2 |
443141 |
6 |
0.155509 |
-0.347806 |
16.695611 |
7.011734e-01 |
* |
|
|
| BA.2.9 |
75328 |
6 |
0.069722 |
-0.881665 |
17.763331 |
4.127142e-01 |
* |
|
|
| BA.2.12.1 |
107150 |
6 |
-0.688939 |
-0.894092 |
17.788184 |
4.065697e-01 |
* |
|
|
| BQ.1.1 |
36940 |
7 |
-0.868500 |
-0.868500 |
17.736999 |
4.168620e-01 |
* |
|
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
8 |
316.180071 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
5 |
309.875086 |
308.960029 |
-265.920058 |
7.318024e-04 |
* |
|
|
| XFG.2 |
500 |
9 |
306.211341 |
302.285967 |
-252.571933 |
9.235878e-07 |
|
* |
|
| XFG.1 |
14 |
8 |
289.021195 |
289.021195 |
-226.042390 |
1.601629e-12 |
|
* |
|
| XFG.3.1 |
87 |
8 |
266.528790 |
266.528790 |
-181.057580 |
2.737026e-22 |
|
* |
|
| LF.7.1 |
165 |
16 |
243.057180 |
236.047856 |
-120.095713 |
1.584832e-35 |
|
|
|
| LF.7.7.1 |
188 |
16 |
224.543813 |
208.690917 |
-65.381834 |
2.078194e-47 |
|
|
|
| LF.7.7.2 |
239 |
16 |
216.171252 |
190.766192 |
-29.532384 |
3.411596e-55 |
|
|
|
| LF.7.2.1 |
67 |
16 |
213.415984 |
206.391862 |
-60.783724 |
2.083574e-48 |
|
|
|
| LF.7.3 |
54 |
16 |
209.578371 |
202.523741 |
-53.047482 |
4.367779e-50 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 88_G|A, 121_C|T, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4230_C|T, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 16887_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 28961_C|T, 29409_C|T, 29510_A|C, 29734_29759,
29762_C|T
Case 58 (XFG): OZ263370
| Target: 530 samples | Number of changes: 150 | |
| BC: XFG.3 + LU.2.1.1 + XFG.3 | BC BR: 7-8, 9-10 | BC BR coord: 3566 - 3567, 4188 - 4189 |
| Direction L1: << | Initial region span: 1-7,8-9,11-150 | Gap history (edge excluded): 7-11 -> 9-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.67e-02 | |
| Rec. model vs L1: 2.74e-07 | Rec. model vs L2: 6.37e-221 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
12.929009 |
None |
None |
None |
* |
* |
* |
| |||||
LU.2.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LU.2.1.1 |
49 |
9 |
7.467971 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.36 |
49 |
9 |
7.467971 |
7.467971 |
-10.935941 |
1.000000 |
* |
* |
|
| XBB.1.5.86 |
101 |
9 |
6.744670 |
6.744670 |
-9.489341 |
0.484325 |
* |
* |
|
| FL.13 |
151 |
9 |
6.342511 |
6.342511 |
-8.685022 |
0.324652 |
* |
* |
|
| XBB.2.3 |
695 |
9 |
6.202173 |
6.202173 |
-8.404347 |
0.280832 |
* |
* |
|
| BA.1.21.1 |
65 |
8 |
6.108827 |
-3.891173 |
11.782347 |
0.000012 |
* |
* |
|
| BA.5.1.2 |
2225 |
9 |
4.344527 |
4.344527 |
-4.689053 |
0.043937 |
* |
* |
|
| B.1.1.25 |
541 |
8 |
3.989795 |
-6.010205 |
16.020411 |
0.000001 |
|
* |
|
| EG.5.1.4 |
1717 |
9 |
3.911457 |
3.911457 |
-3.822914 |
0.028439 |
* |
* |
|
| BA.5.2 |
49968 |
9 |
3.872117 |
3.872117 |
-3.744233 |
0.027324 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
11 |
316.228088 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
11 |
304.248505 |
307.214112 |
-274.428224 |
6.524149e-06 |
|
* |
|
| XFG.2 |
500 |
11 |
299.421298 |
302.413148 |
-264.826297 |
5.369210e-08 |
|
* |
|
| XFG.3.1 |
87 |
11 |
272.334253 |
275.208518 |
-210.417036 |
8.221082e-20 |
|
* |
|
| XFG.1 |
14 |
11 |
255.177861 |
258.213970 |
-176.427940 |
3.420537e-27 |
|
* |
|
| LF.7.1 |
165 |
12 |
222.566038 |
215.553253 |
-91.106506 |
1.016463e-45 |
|
* |
|
| LF.7.7.1 |
188 |
12 |
218.986556 |
211.957879 |
-83.915759 |
2.791277e-47 |
|
* |
|
| LF.7.1.8 |
44 |
12 |
215.721266 |
208.687865 |
-77.375731 |
1.060865e-48 |
|
* |
|
| LF.7.6 |
15 |
12 |
200.487112 |
193.523220 |
-47.046441 |
2.751593e-55 |
|
* |
|
| LF.7.3 |
54 |
12 |
197.040048 |
190.000306 |
-40.000612 |
8.103939e-57 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4206_C|T, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16394_C|T, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28805_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ282610
| Target: 530 samples | Number of changes: 152 | |
| BC: JN.11 + XFG.2 | BC BR: 5-6 | BC BR coord: 2067 - 2068 |
| Direction L1: << | Initial region span: 1-5,7-152 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.07e-235 | Rec. model vs L2: 1.16e-23 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
5 |
9.433251 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
4 |
8.417788 |
-1.582212 |
19.164424 |
1.645304e-05 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
-1.764534 |
19.529067 |
1.367420e-05 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
-8.934158 |
33.868317 |
1.051987e-08 |
|
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
-10.408730 |
36.817461 |
2.406722e-09 |
|
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
-9.835735 |
35.671469 |
4.277060e-09 |
|
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
-2.722307 |
21.444614 |
5.261997e-06 |
|
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
-2.745363 |
21.490726 |
5.132078e-06 |
|
* |
|
| KP.3.1 |
1957 |
5 |
7.210993 |
7.210993 |
1.578014 |
1.080674e-01 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
-2.837678 |
21.675356 |
4.666972e-06 |
|
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
7 |
320.737083 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
8 |
313.613273 |
293.613273 |
-247.226546 |
7.470942e-12 |
|
* |
|
| LF.7 |
58 |
8 |
313.571870 |
293.571870 |
-247.143740 |
7.142202e-12 |
|
* |
|
| XFG.3.1 |
87 |
8 |
281.566276 |
261.566276 |
-183.132551 |
8.999891e-26 |
|
* |
|
| XFG.1 |
14 |
8 |
264.571728 |
244.571728 |
-149.143455 |
3.744575e-33 |
|
* |
|
| LF.7.1 |
165 |
14 |
222.566038 |
201.941555 |
-63.883111 |
1.146644e-51 |
|
|
|
| LF.7.7.1 |
188 |
14 |
218.986556 |
210.385030 |
-80.770060 |
5.333910e-48 |
|
|
|
| LF.7.1.8 |
44 |
14 |
215.721266 |
195.115133 |
-50.230265 |
1.245572e-54 |
|
|
|
| LF.7.6 |
15 |
14 |
200.487112 |
179.880978 |
-19.761956 |
3.012260e-61 |
|
|
|
| LF.7.3 |
54 |
14 |
197.040048 |
176.358064 |
-12.716127 |
8.916120e-63 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 1684_C|T, 2334_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13118_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22088_C|T, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ284632
| Target: 530 samples | Number of changes: 143 | |
| BC: BQ.1.1.35 + XFG.3 | BC BR: 4-5 | BC BR coord: 685 - 686 |
| Direction L1: << | Initial region span: 1-4,9-143 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 2.23e-10 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BQ.1.1.35 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BQ.1.1.35 |
191 |
4 |
10.486205 |
NaN |
NaN |
NaN |
* |
* |
* |
| ET.1 |
78 |
3 |
7.434339 |
-2.565661 |
13.131321 |
0.000002 |
|
* |
|
| KP.3.1.4 |
511 |
7 |
7.427846 |
2.741159 |
2.517682 |
0.000433 |
* |
|
|
| XEC.39 |
155 |
5 |
6.963453 |
3.342570 |
1.314859 |
0.000793 |
* |
* |
|
| LB.1.3.1 |
292 |
7 |
6.759817 |
2.065162 |
3.869677 |
0.000220 |
* |
|
|
| KP.2.2 |
1334 |
7 |
6.735397 |
2.058892 |
3.882216 |
0.000219 |
* |
|
|
| MC.16 |
917 |
6 |
6.418927 |
1.730826 |
4.538348 |
0.000158 |
* |
|
|
| KP.3.1 |
1957 |
7 |
6.411016 |
1.728378 |
4.543244 |
0.000158 |
* |
|
|
| XEC.2 |
921 |
7 |
6.064512 |
1.375780 |
5.248439 |
0.000111 |
* |
|
|
| XBC.1 |
44 |
4 |
5.867514 |
5.867514 |
-3.735028 |
0.009902 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
278.075549 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
9 |
270.818475 |
257.964145 |
-167.928290 |
3.736299e-07 |
|
* |
|
| LF.7 |
58 |
9 |
247.857314 |
242.548371 |
-137.096742 |
7.547311e-14 |
|
* |
|
| XFG.3.1 |
87 |
9 |
233.774196 |
228.482644 |
-108.965289 |
5.880853e-20 |
|
* |
|
| XFG.1 |
14 |
9 |
187.790145 |
182.498594 |
-16.997187 |
6.286495e-40 |
|
* |
|
| LF.7.1 |
165 |
13 |
178.996898 |
171.987574 |
4.024852 |
1.713853e-44 |
|
|
|
| LF.7.7.1 |
188 |
13 |
143.224718 |
127.371822 |
93.256356 |
7.173875e-64 |
|
|
|
| LF.7.3.1 |
26 |
13 |
139.050423 |
132.032423 |
83.935153 |
7.578200e-62 |
|
|
|
| JN.1.16.1 |
466 |
13 |
135.350871 |
128.315666 |
91.368669 |
1.845704e-63 |
|
|
|
| LF.7.3 |
54 |
13 |
134.060531 |
127.005901 |
93.988198 |
4.980080e-64 |
|
|
|
|
Target sequence
, 241_C|T, 601_C|T, 670_T|G, 683_C|T, 897_C|A, 2790_C|T, 3037_C|T, 3145_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11020_C|T, 11042_G|T, 11083_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15738_C|T, 15756_T|A, 16600_T|C, 16887_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21653_T|C, 21711_C|T,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22606_A|G, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28881_G|A, 28882_G|A,
28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29762_C|T
Case 58 (XFG): OZ284870
| Target: 530 samples | Number of changes: 140 | |
| BC: LF.7 + HK.13 + LF.7 | BC BR: 129-130, 134-135 | BC BR coord: 27915 - 27916, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-129,130-134,135-140 | Gap history (edge excluded): 129-135 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.55e-03 | |
| Rec. model vs L1: 1.02e-15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
129 |
279.782631 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
140 |
254.107420 |
255.211820 |
-172.423641 |
3.538760e-15 |
|
|
|
| XFG.3.1 |
87 |
129 |
229.930731 |
242.296025 |
-146.592049 |
8.708390e-21 |
|
* |
|
| XFG.2 |
500 |
103 |
228.717189 |
237.752784 |
-137.505569 |
9.294819e-23 |
|
|
|
| XFG.1 |
14 |
103 |
170.141484 |
177.670054 |
-17.340109 |
7.475788e-49 |
|
|
|
| LF.7.1 |
165 |
140 |
155.652251 |
149.265249 |
39.469501 |
3.447643e-61 |
|
|
|
| LF.7.3.1 |
26 |
129 |
149.543813 |
144.685647 |
48.628705 |
3.535522e-63 |
|
* |
|
| LF.7.1.8 |
44 |
129 |
145.949746 |
141.142250 |
55.715501 |
1.020656e-64 |
|
* |
|
| LF.7.9 |
20 |
73 |
145.140273 |
132.767805 |
72.464389 |
2.365020e-68 |
|
|
|
| LF.7.7.1 |
188 |
133 |
142.635628 |
144.292390 |
49.415220 |
2.381810e-63 |
|
|
|
| |||||
HK.13 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| HK.13 |
165 |
130 |
10.169244 |
NaN |
NaN |
NaN |
* |
* |
* |
| FY.8.1 |
29 |
131 |
9.130739 |
-0.869261 |
13.738522 |
0.000016 |
* |
* |
|
| FY.4.1 |
61 |
131 |
8.549246 |
-1.450754 |
14.901508 |
0.000009 |
|
* |
|
| FY.8 |
23 |
130 |
8.410314 |
8.410314 |
-4.820627 |
0.172045 |
* |
* |
|
| FL.1 |
118 |
130 |
8.290629 |
8.290629 |
-4.581259 |
0.152590 |
* |
* |
|
| HK.19 |
25 |
131 |
7.758518 |
-2.241482 |
16.482963 |
0.000004 |
|
* |
|
| XFG.3 |
480 |
131 |
7.718840 |
-2.281160 |
16.562320 |
0.000004 |
|
* |
|
| HK.8 |
39 |
131 |
7.699095 |
-2.300905 |
16.601810 |
0.000004 |
|
* |
|
| EG.9.1 |
32 |
131 |
7.183154 |
-2.816846 |
17.633692 |
0.000002 |
|
* |
|
| EG.5.1.2 |
69 |
131 |
7.065371 |
-2.934629 |
17.869258 |
0.000002 |
|
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
135 |
8.703627 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C,
17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21641_G|T, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G,
22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22883_C|A, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23758_C|T,
23854_C|A, 23948_G|T, 24034_C|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25273_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28093_C|T, 28271_A|T, 28297_T|C, 28311_C|T, 28878_G|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29409_C|T, 29510_A|C
Case 58 (XFG): OZ285842
| Target: 530 samples | Number of changes: 150 | |
| BC: JN.11 + LF.7 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,7-150 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.22e-227 | Rec. model vs L2: 4.18e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
4 |
8.712905 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
4 |
8.417788 |
8.417788 |
-8.835576 |
0.744532 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
8.235466 |
-8.470933 |
0.618783 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
7.675851 |
-7.351701 |
0.353455 |
* |
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
7.629331 |
-7.258661 |
0.337902 |
* |
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
7.408788 |
-6.817576 |
0.271173 |
* |
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
7.277693 |
-6.555386 |
0.238115 |
* |
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
7.254637 |
-6.509274 |
0.232236 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
7.162322 |
-6.324644 |
0.211189 |
* |
* |
|
| LP.8.1.10 |
32 |
4 |
7.156197 |
7.156197 |
-6.312394 |
0.210136 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
7 |
334.007833 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
7 |
333.322187 |
313.322187 |
-282.644374 |
5.015761e-01 |
* |
* |
|
| XFG.2 |
500 |
7 |
328.181516 |
309.140532 |
-274.281065 |
7.673365e-03 |
* |
* |
|
| XFG.3.1 |
87 |
7 |
291.566276 |
271.566276 |
-199.132551 |
3.684433e-19 |
|
* |
|
| XFG.1 |
14 |
7 |
286.429076 |
266.429076 |
-188.858152 |
2.169045e-21 |
|
* |
|
| LF.7.1 |
165 |
13 |
242.649646 |
222.025163 |
-100.050326 |
1.125698e-40 |
|
|
|
| LF.7.7.1 |
188 |
13 |
228.986556 |
209.020063 |
-74.040126 |
2.531759e-46 |
|
|
|
| LF.7.1.8 |
44 |
13 |
225.721266 |
205.115133 |
-66.230265 |
5.099204e-48 |
|
|
|
| LF.7.6 |
15 |
13 |
210.487112 |
189.880978 |
-35.761956 |
1.233179e-54 |
|
|
|
| LF.7.3.1 |
26 |
13 |
209.990938 |
189.345583 |
-34.691167 |
7.222348e-55 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 1096_A|G, 2334_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16475_G|A, 16600_T|C, 16887_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ263370
| Target: 530 samples | Number of changes: 150 | |
| BC: XFG.3 + LU.2.1.1 + XFG.3 | BC BR: 7-8, 9-10 | BC BR coord: 3566 - 3567, 4188 - 4189 |
| Direction L1: << | Initial region span: 1-7,8-9,11-150 | Gap history (edge excluded): 7-11 -> 9-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.67e-02 | |
| Rec. model vs L1: 2.74e-07 | Rec. model vs L2: 6.37e-221 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
12.929009 |
None |
None |
None |
* |
* |
* |
| |||||
LU.2.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LU.2.1.1 |
49 |
9 |
7.467971 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.36 |
49 |
9 |
7.467971 |
7.467971 |
-10.935941 |
1.000000 |
* |
* |
|
| XBB.1.5.86 |
101 |
9 |
6.744670 |
6.744670 |
-9.489341 |
0.484325 |
* |
* |
|
| FL.13 |
151 |
9 |
6.342511 |
6.342511 |
-8.685022 |
0.324652 |
* |
* |
|
| XBB.2.3 |
695 |
9 |
6.202173 |
6.202173 |
-8.404347 |
0.280832 |
* |
* |
|
| BA.1.21.1 |
65 |
8 |
6.108827 |
-3.891173 |
11.782347 |
0.000012 |
* |
* |
|
| BA.5.1.2 |
2225 |
9 |
4.344527 |
4.344527 |
-4.689053 |
0.043937 |
* |
* |
|
| B.1.1.25 |
541 |
8 |
3.989795 |
-6.010205 |
16.020411 |
0.000001 |
|
* |
|
| EG.5.1.4 |
1717 |
9 |
3.911457 |
3.911457 |
-3.822914 |
0.028439 |
* |
* |
|
| BA.5.2 |
49968 |
9 |
3.872117 |
3.872117 |
-3.744233 |
0.027324 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
11 |
316.228088 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
11 |
304.248505 |
307.214112 |
-274.428224 |
6.524149e-06 |
|
* |
|
| XFG.2 |
500 |
11 |
299.421298 |
302.413148 |
-264.826297 |
5.369210e-08 |
|
* |
|
| XFG.3.1 |
87 |
11 |
272.334253 |
275.208518 |
-210.417036 |
8.221082e-20 |
|
* |
|
| XFG.1 |
14 |
11 |
255.177861 |
258.213970 |
-176.427940 |
3.420537e-27 |
|
* |
|
| LF.7.1 |
165 |
12 |
222.566038 |
215.553253 |
-91.106506 |
1.016463e-45 |
|
* |
|
| LF.7.7.1 |
188 |
12 |
218.986556 |
211.957879 |
-83.915759 |
2.791277e-47 |
|
* |
|
| LF.7.1.8 |
44 |
12 |
215.721266 |
208.687865 |
-77.375731 |
1.060865e-48 |
|
* |
|
| LF.7.6 |
15 |
12 |
200.487112 |
193.523220 |
-47.046441 |
2.751593e-55 |
|
* |
|
| LF.7.3 |
54 |
12 |
197.040048 |
190.000306 |
-40.000612 |
8.103939e-57 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4206_C|T, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16394_C|T, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28805_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): OZ286915
| Target: 530 samples | Number of changes: 135 | |
| BC: XFG.3 + CP.5 + XFG.3 | BC BR: 16-17, 26-27 | BC BR coord: 7842 - 7843, 11307 - 11308 |
| Direction L1: << | Initial region span: 1-16,17-21,35-135 | Gap history (edge excluded): 16-35 -> 21-35 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.65e-11 | |
| Rec. model vs L1: 2.72e-52 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
16 |
32.463016 |
None |
None |
None |
* |
* |
* |
| |||||
CP.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| CP.5 |
75 |
21 |
9.955291 |
NaN |
NaN |
NaN |
* |
* |
* |
| GU.1 |
74 |
20 |
9.843387 |
-10.014339 |
46.028679 |
0.000001 |
|
* |
|
| XBB.1.5.41 |
44 |
20 |
9.843387 |
-10.014339 |
46.028679 |
0.000001 |
|
* |
|
| DV.5 |
17 |
20 |
9.312759 |
1.553633 |
22.892735 |
0.118837 |
* |
* |
|
| BA.5.1.22 |
4997 |
26 |
9.302971 |
9.302971 |
7.394059 |
275.889383 |
* |
|
|
| BQ.1.13 |
999 |
26 |
9.177364 |
9.177364 |
7.645272 |
242.257207 |
* |
|
|
| BA.5.2.22 |
994 |
26 |
8.899675 |
8.899675 |
8.200651 |
184.011821 |
* |
|
|
| BE.1 |
8190 |
27 |
8.627139 |
6.216802 |
13.566396 |
12.553506 |
* |
|
|
| DN.2 |
895 |
26 |
8.007393 |
8.007393 |
9.985213 |
75.188628 |
* |
|
|
| BF.7 |
11554 |
27 |
7.718461 |
6.590511 |
12.818978 |
18.265244 |
* |
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
35 |
211.076442 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
35 |
207.482856 |
193.116410 |
-76.232819 |
2.839438e-13 |
|
* |
|
| XFG.2 |
500 |
35 |
197.290861 |
182.762504 |
-55.525009 |
9.084155e-18 |
|
* |
|
| XFG.3.1 |
87 |
39 |
191.688029 |
170.702727 |
-31.405455 |
5.256457e-23 |
|
|
|
| XFG.1 |
14 |
39 |
189.636519 |
163.254528 |
-16.509056 |
3.056323e-26 |
|
|
|
| LF.7.7.1 |
188 |
39 |
165.425663 |
142.106791 |
25.786418 |
1.994669e-35 |
|
|
|
| LF.7.1 |
165 |
35 |
156.111811 |
124.906057 |
60.187887 |
6.760920e-43 |
|
* |
|
| KP.3 |
769 |
18 |
152.632080 |
162.092837 |
-14.185675 |
9.581149e-27 |
|
|
|
| KP.3.1 |
1957 |
36 |
150.309901 |
120.997031 |
68.005937 |
1.354922e-44 |
|
* |
|
| LF.7.3 |
54 |
39 |
150.119738 |
105.797158 |
98.405685 |
3.393425e-51 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5622_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 8818_C|T, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11288_11296, 11681_C|T, 11727_G|A, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 17410_C|T, 18163_A|G, 18894_C|T, 19955_C|T,
20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C,
22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ286929
| Target: 530 samples | Number of changes: 154 | |
| BC: LF.7 + XDD.1.1 + LF.7 | BC BR: 141-142, 147-148 | BC BR coord: 27915 - 27916, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-141,143-147,148-154 | Gap history (edge excluded): 141-148 -> 141-143 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.27e-06 | |
| Rec. model vs L1: 1.65e-07 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
141 |
298.898197 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
141 |
297.792045 |
311.334099 |
-286.668198 |
3.706174e+00 |
* |
* |
|
| XFG.2 |
500 |
141 |
288.893236 |
302.457353 |
-268.914705 |
5.156924e-04 |
* |
* |
|
| XFG.3.1 |
87 |
141 |
263.743179 |
276.700095 |
-217.400191 |
3.366173e-15 |
|
* |
|
| XFG.1 |
14 |
141 |
245.223539 |
258.908693 |
-181.817386 |
6.324665e-23 |
|
* |
|
| LF.7.1 |
165 |
141 |
208.084215 |
217.262826 |
-98.525652 |
5.186135e-41 |
|
* |
|
| LF.7.6 |
15 |
141 |
205.217225 |
202.733078 |
-69.466157 |
2.538312e-47 |
|
* |
|
| LF.7.7.1 |
188 |
141 |
202.099682 |
206.410565 |
-76.821130 |
1.001330e-45 |
|
* |
|
| LF.7.1.8 |
44 |
141 |
197.600079 |
195.085761 |
-54.171522 |
1.208349e-50 |
|
* |
|
| LF.7.3 |
54 |
141 |
193.829884 |
191.451098 |
-46.902196 |
3.188099e-52 |
|
* |
|
| |||||
XDD.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XDD.1.1 |
29 |
143 |
13.385163 |
NaN |
NaN |
NaN |
* |
* |
* |
| JG.3 |
1482 |
143 |
10.138247 |
0.138247 |
17.723506 |
3.896856e-02 |
* |
* |
|
| HK.3 |
1830 |
143 |
9.256169 |
-0.743831 |
19.487662 |
1.608288e-02 |
* |
* |
|
| JN.1.3 |
111 |
145 |
8.464940 |
-16.336019 |
50.672039 |
2.727174e-09 |
|
|
|
| XBB.1.5.43 |
48 |
145 |
8.201786 |
-11.033084 |
40.066167 |
5.463533e-07 |
|
|
|
| GK.2.1 |
255 |
143 |
7.855661 |
-8.235089 |
34.470179 |
8.984587e-06 |
|
* |
|
| BW.1 |
131 |
145 |
7.218843 |
-12.016026 |
42.032053 |
2.050525e-07 |
|
|
|
| XBB.1.16.6 |
4784 |
142 |
6.553074 |
6.553074 |
4.893853 |
2.380748e+01 |
* |
* |
|
| BA.2.76 |
427 |
145 |
6.030217 |
-13.204653 |
44.409305 |
6.238132e-08 |
|
|
|
| BA.2.36 |
3016 |
145 |
5.869129 |
-13.366736 |
44.733472 |
5.315785e-08 |
|
|
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
148 |
11.12495 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4822_A|G, 5239_C|T, 6183_A|G, 6351_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9989_A|G, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25703_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28268_A|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28467_A|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): OZ286968
| Target: 530 samples | Number of changes: 151 | |
| BC: XEK.6 + XFG.3 | BC BR: 6-7 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-6,8-151 | Gap history (edge excluded): 6-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.00e-01 | |
| Rec. model vs L1: 1.10e-245 | Rec. model vs L2: 3.00e-09 | |
| Flags: Model_1BP_Best | | |
XEK.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.6 |
23 |
6 |
16.273655 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.7 |
12 |
6 |
15.403708 |
15.403708 |
-18.807416 |
0.418952 |
* |
* |
|
| XEK.2 |
67 |
6 |
15.085032 |
15.085032 |
-18.170063 |
0.304221 |
* |
* |
|
| XEK.1 |
88 |
6 |
13.684686 |
13.684686 |
-15.369373 |
0.075020 |
* |
* |
|
| XEK.1.1 |
11 |
6 |
12.997514 |
12.997514 |
-13.995028 |
0.037817 |
* |
* |
|
| KP.2.3.5 |
89 |
6 |
12.724723 |
12.724723 |
-13.449447 |
0.028725 |
* |
* |
|
| PF.2.1 |
37 |
6 |
12.259868 |
12.259868 |
-12.519735 |
0.018043 |
* |
* |
|
| LP.8.1.7 |
42 |
6 |
12.225238 |
12.225238 |
-12.450475 |
0.017422 |
* |
* |
|
| KP.2.2 |
1334 |
7 |
12.190723 |
8.722390 |
-5.444779 |
0.000523 |
* |
* |
|
| LF.9 |
48 |
6 |
12.151112 |
12.151112 |
-12.302224 |
0.016163 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
348.462493 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
8 |
340.821226 |
323.282596 |
-306.565192 |
2.567919e-07 |
|
* |
|
| LF.7 |
58 |
8 |
336.350487 |
326.350487 |
-312.700975 |
5.504195e-06 |
|
* |
|
| XFG.3.1 |
87 |
8 |
304.123042 |
294.123042 |
-248.246084 |
5.566140e-20 |
|
* |
|
| XFG.1 |
14 |
8 |
287.190678 |
277.190678 |
-214.381355 |
2.459105e-27 |
|
* |
|
| LF.7.1 |
165 |
14 |
254.384274 |
243.759791 |
-147.519582 |
7.452682e-42 |
|
|
|
| LF.7.7.1 |
188 |
14 |
236.607347 |
217.165042 |
-94.330084 |
2.100152e-53 |
|
|
|
| LF.7.1.8 |
44 |
14 |
224.724215 |
214.118082 |
-88.236163 |
9.995951e-55 |
|
|
|
| LF.7.6 |
15 |
14 |
223.630791 |
213.024657 |
-86.049313 |
3.344042e-55 |
|
|
|
| LF.7.3.1 |
26 |
14 |
222.884140 |
212.238785 |
-84.477570 |
1.525283e-55 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 593_C|T, 670_T|G, 897_C|A, 979_T|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25708_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ287971
| Target: 530 samples | Number of changes: 144 | |
| BC: XFG.3 + XBB.1.16.22 + XFG.3 | BC BR: 4-5, 8-9 | BC BR coord: 896 - 897, 3176 - 3177 |
| Direction L1: << | Initial region span: 1-4,5-8,10-144 | Gap history (edge excluded): 4-10 -> 8-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.27e-02 | |
| Rec. model vs L1: 3.57e-15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
4 |
4.53194 |
None |
None |
None |
* |
* |
* |
| |||||
XBB.1.16.22 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XBB.1.16.22 |
25 |
8 |
8.182764 |
NaN |
NaN |
NaN |
* |
* |
* |
| NL.4 |
115 |
9 |
8.012209 |
4.437504 |
1.124991 |
2.363563e-02 |
* |
* |
|
| GN.1.1 |
93 |
8 |
7.347076 |
7.347076 |
-4.694153 |
4.317105e-01 |
* |
* |
|
| JN.1.9 |
576 |
9 |
6.174414 |
2.599710 |
4.800580 |
3.753750e-03 |
* |
* |
|
| AY.71 |
260 |
5 |
5.908262 |
-0.407936 |
10.815872 |
1.850286e-04 |
* |
|
|
| AY.73 |
462 |
5 |
5.908262 |
-14.087852 |
38.175704 |
2.118802e-10 |
|
|
|
| AY.72 |
300 |
5 |
5.908262 |
-14.087852 |
38.175704 |
2.118802e-10 |
|
|
|
| B.1.1.181 |
17 |
5 |
5.908262 |
-14.087852 |
38.175704 |
2.118802e-10 |
|
|
|
| AY.2 |
1597 |
5 |
5.907009 |
-21.536087 |
53.072174 |
1.238135e-13 |
|
|
|
| AY.38 |
560 |
5 |
5.897490 |
-14.098624 |
38.197248 |
2.097720e-10 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
10 |
236.270134 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
10 |
233.697884 |
228.383026 |
-110.766052 |
4.118589e-06 |
|
* |
|
| XFG.2 |
500 |
10 |
230.267352 |
224.873192 |
-103.746384 |
1.231331e-07 |
|
* |
|
| XFG.3.1 |
87 |
9 |
229.822136 |
224.540955 |
-103.081910 |
8.808179e-08 |
|
* |
|
| XFG.1 |
14 |
10 |
182.893469 |
177.525502 |
-9.051003 |
3.361484e-28 |
|
* |
|
| LF.7.1 |
165 |
12 |
150.222089 |
147.507258 |
50.985483 |
3.083264e-41 |
|
|
|
| LF.7.3.1 |
26 |
12 |
144.392309 |
130.100918 |
85.798164 |
8.513640e-49 |
|
|
|
| LF.7.1.8 |
44 |
12 |
142.683653 |
128.322753 |
89.354495 |
1.442921e-49 |
|
|
|
| LF.7.7.1 |
188 |
12 |
141.151123 |
128.739889 |
88.520223 |
2.185117e-49 |
|
|
|
| LF.7.9 |
20 |
12 |
131.014800 |
116.828770 |
112.342460 |
1.469019e-54 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2509_C|T, 2790_C|T, 3037_C|T, 3176_C|T, 3431_G|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12116_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 18981_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22259_A|G, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 27887_A|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ287981
| Target: 530 samples | Number of changes: 139 | |
| BC: JN.1.61 + XFG.2 | BC BR: 4-5 | BC BR coord: 2067 - 2068 |
| Direction L1: << | Initial region span: 1-4,5-139 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.21e-154 | Rec. model vs L2: 1.46e-16 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.61 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.61 |
13 |
4 |
8.056002 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.6 |
15 |
4 |
7.912902 |
7.912902 |
-3.825803 |
0.869358 |
* |
* |
|
| MC.5 |
19 |
4 |
7.676513 |
7.676513 |
-3.353026 |
0.683861 |
* |
* |
|
| JN.1.9 |
576 |
4 |
7.611185 |
7.611185 |
-3.222370 |
0.640824 |
* |
* |
|
| XFG.3.1 |
87 |
4 |
7.541338 |
7.541338 |
-3.082676 |
0.597501 |
* |
* |
|
| KP.3.5 |
345 |
4 |
7.429557 |
1.360203 |
9.279594 |
0.001237 |
* |
* |
|
| JN.1.40 |
26 |
4 |
7.323635 |
7.323635 |
-2.647269 |
0.481909 |
* |
* |
|
| XEC.2.3 |
28 |
4 |
7.288747 |
7.288747 |
-2.577494 |
0.465334 |
* |
* |
|
| KP.3.1.11 |
31 |
4 |
7.186965 |
-2.161221 |
16.322441 |
0.000037 |
* |
* |
|
| KP.2.27 |
73 |
4 |
7.009846 |
7.009846 |
-2.019692 |
0.351692 |
* |
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
5 |
268.451318 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
3 |
266.120225 |
261.420618 |
-184.841236 |
8.849318e-04 |
* |
|
|
| XFG.3.1 |
87 |
1 |
263.645367 |
256.104029 |
-174.208058 |
4.351456e-06 |
|
|
|
| LF.7 |
58 |
3 |
263.284930 |
258.570676 |
-179.141352 |
5.118828e-05 |
* |
|
|
| XFG.1 |
14 |
3 |
212.337916 |
207.623663 |
-77.247325 |
3.837409e-27 |
|
|
|
| LF.7.1 |
165 |
1 |
184.727660 |
177.856903 |
-17.713807 |
4.519511e-40 |
|
|
|
| LF.7.3.1 |
26 |
3 |
165.604825 |
160.929792 |
16.140417 |
2.016774e-47 |
|
|
|
| LF.7.1.8 |
44 |
15 |
163.998212 |
158.490423 |
21.019154 |
1.757838e-48 |
|
|
|
| LF.7.7.1 |
188 |
14 |
160.364115 |
148.132389 |
41.735222 |
5.567855e-53 |
|
|
|
| LF.7.9 |
20 |
3 |
153.201129 |
148.486875 |
41.026250 |
7.940767e-53 |
|
|
|
|
Target sequence
, 241_C|T, 337_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5654_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 20404_C|T, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C,
22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26029_C|A, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): OZ288005
| Target: 530 samples | Number of changes: 156 | |
| BC: JN.1 + XFG.3 | BC BR: 13-14 | BC BR coord: 3795 - 3796 |
| Direction L1: << | Initial region span: 1-12,14-156 | Gap history (edge excluded): 12-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.90e-06 | |
| Rec. model vs L1: 8.74e-98 | Rec. model vs L2: 1.29e-14 | |
| Flags: Model_1BP_Best | | |
JN.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
12 |
14.844390 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
6 |
13.966498 |
-7.716213 |
47.432427 |
3.599702e-10 |
|
|
|
| KP.4.2.4 |
22 |
6 |
13.105203 |
-16.873398 |
65.746796 |
3.785550e-14 |
|
|
|
| XEC.2.1 |
265 |
7 |
12.883972 |
1.174578 |
29.650843 |
2.613030e-06 |
|
|
|
| XEC.2.2.1 |
46 |
6 |
12.719756 |
-17.254500 |
66.509000 |
2.588792e-14 |
|
|
|
| MK.1 |
151 |
6 |
12.429824 |
-9.293433 |
50.586866 |
7.414489e-11 |
|
|
|
| KR.1.4 |
24 |
6 |
11.948497 |
-16.978736 |
65.957472 |
3.408224e-14 |
|
|
|
| JN.11 |
67 |
6 |
11.892484 |
-23.451718 |
78.903436 |
5.280108e-17 |
|
|
|
| KP.3.1.2 |
28 |
6 |
11.663252 |
-10.019459 |
52.038918 |
3.591019e-11 |
|
|
|
| JN.1.69 |
32 |
6 |
11.470297 |
-10.212414 |
52.424828 |
2.969626e-11 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
14 |
299.641562 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
14 |
298.103700 |
298.103700 |
-266.207400 |
2.154557e-01 |
* |
* |
|
| XFG.2 |
500 |
14 |
294.527672 |
294.527672 |
-259.055343 |
6.036083e-03 |
* |
* |
|
| XFG.3.1 |
87 |
14 |
265.967596 |
265.967596 |
-201.935191 |
2.383992e-15 |
|
* |
|
| XFG.1 |
14 |
14 |
248.873388 |
248.873388 |
-167.746777 |
8.975127e-23 |
|
* |
|
| LF.7.1 |
165 |
16 |
215.285288 |
206.361865 |
-82.723729 |
3.083264e-41 |
|
|
|
| LF.7.7.1 |
188 |
16 |
206.607347 |
188.853086 |
-47.706173 |
7.703460e-49 |
|
|
|
| LF.7.1.8 |
44 |
16 |
194.724215 |
185.800792 |
-41.601585 |
3.630080e-50 |
|
|
|
| LF.7.6 |
15 |
16 |
193.630791 |
184.707368 |
-39.414735 |
1.214405e-50 |
|
|
|
| LF.7.3 |
54 |
16 |
190.394448 |
181.452332 |
-32.904665 |
4.685276e-52 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 1429_T|C, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3792_C|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G,
7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 18981_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN,
21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22311_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A,
22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29362_C|T, 29409_C|T,
29510_A|C, 29734_29759
Case 58 (XFG): OZ288008
| Target: 530 samples | Number of changes: 144 | |
| BC: LD.1 + XFG.3.1 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-144 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.04e-172 | Rec. model vs L2: 1.35e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LD.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LD.1 |
70 |
4 |
9.085704 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
4 |
8.457912 |
8.457912 |
-8.915824 |
0.535261 |
* |
* |
|
| BA.5.1.17 |
357 |
3 |
8.456578 |
-1.543422 |
11.086845 |
0.000024 |
* |
* |
|
| JN.1.29 |
69 |
4 |
7.971640 |
7.971640 |
-7.943281 |
0.327915 |
* |
* |
|
| KP.2 |
1589 |
5 |
7.815486 |
6.243829 |
-4.487657 |
0.058426 |
* |
* |
|
| MC.8 |
93 |
4 |
7.731975 |
7.731975 |
-7.463950 |
0.257947 |
* |
* |
|
| XEC.39 |
155 |
4 |
7.208205 |
7.208205 |
-6.416409 |
0.153355 |
* |
* |
|
| MC.9 |
298 |
4 |
6.547233 |
6.547233 |
-5.094467 |
0.078866 |
* |
* |
|
| MC.2 |
396 |
4 |
6.252566 |
6.252566 |
-4.505133 |
0.059013 |
* |
* |
|
| MC.1 |
932 |
4 |
6.073660 |
6.073660 |
-4.147321 |
0.049292 |
* |
* |
|
| |||||
XFG.3.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3.1 |
87 |
6 |
216.104029 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
6 |
210.478161 |
200.478161 |
-38.956321 |
3.606563e-03 |
* |
* |
|
| LF.7 |
58 |
6 |
204.955260 |
194.955260 |
-27.910520 |
1.437529e-05 |
* |
* |
|
| XFG.2 |
500 |
6 |
193.543640 |
185.842548 |
-9.685095 |
1.589256e-09 |
|
* |
|
| XFG.1 |
14 |
17 |
167.864152 |
157.623663 |
46.752675 |
8.818679e-22 |
|
|
|
| LF.7.3.1 |
26 |
16 |
134.359234 |
110.929792 |
140.140417 |
4.634711e-42 |
|
|
|
| PY.4 |
10 |
16 |
131.975776 |
94.360777 |
173.278445 |
2.949600e-49 |
|
|
|
| LF.7.1 |
165 |
17 |
130.995405 |
116.455871 |
129.088258 |
1.162786e-39 |
|
|
|
| LF.7.7.1 |
188 |
16 |
130.364115 |
98.132389 |
165.735222 |
1.279538e-47 |
|
|
|
| LF.7.1.8 |
44 |
17 |
122.052452 |
96.544664 |
168.910673 |
2.622386e-48 |
|
|
|
|
Target sequence
, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 5944_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 18912_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21676_C|T, 21711_C|T, 21811_C|T, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 26906_T|C, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28881_G|A, 28882_G|A,
28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29546_C|T, 29734_29759
Case 58 (XFG): OZ288058
| Target: 530 samples | Number of changes: 144 | |
| BC: XFG.3 + BW.1 + XFG.3 | BC BR: 3-4, 5-6 | BC BR coord: 896 - 897, 2792 - 2793 |
| Direction L1: << | Initial region span: 1-3,4-5,7-144 | Gap history (edge excluded): 3-7 -> 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.59e-02 | |
| Rec. model vs L1: 5.55e-09 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.704173 |
None |
None |
None |
* |
* |
* |
| |||||
BW.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BW.1 |
131 |
5 |
8.022833 |
NaN |
NaN |
NaN |
* |
* |
* |
| BW.1.1.1 |
116 |
5 |
8.022833 |
8.022833 |
-12.045667 |
1.000000 |
* |
* |
|
| BW.1.1.2 |
55 |
5 |
8.022833 |
8.022833 |
-12.045667 |
1.000000 |
* |
* |
|
| BW.1.1 |
210 |
5 |
8.008445 |
8.008445 |
-12.016889 |
0.985112 |
* |
* |
|
| FL.1 |
118 |
6 |
5.310087 |
3.252149 |
-2.504297 |
0.008438 |
* |
* |
|
| XBB.2.3.19 |
115 |
5 |
4.376513 |
4.376513 |
-4.753027 |
0.025991 |
* |
* |
|
| XBB.1.5.79 |
118 |
5 |
4.350761 |
4.350761 |
-4.701522 |
0.025349 |
* |
* |
|
| JY.1.1 |
42 |
5 |
4.285164 |
4.285164 |
-4.570327 |
0.023754 |
* |
* |
|
| BA.4 |
10442 |
5 |
4.223701 |
4.223701 |
-4.447401 |
0.022371 |
* |
* |
|
| BA.2.79 |
46 |
5 |
4.194192 |
4.194192 |
-4.388384 |
0.021710 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
283.528307 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
7 |
276.945175 |
271.633794 |
-197.267588 |
1.367187e-03 |
* |
* |
|
| LF.7 |
58 |
7 |
270.781084 |
265.499903 |
-184.999806 |
2.960951e-06 |
|
* |
|
| XFG.3.1 |
87 |
7 |
264.002856 |
258.721675 |
-171.443351 |
3.364454e-09 |
|
* |
|
| XFG.1 |
14 |
7 |
207.581325 |
202.300144 |
-58.600287 |
1.056866e-33 |
|
* |
|
| LF.7.1 |
165 |
12 |
189.445739 |
182.432323 |
-18.864645 |
2.480782e-42 |
|
|
|
| LF.7.1.8 |
44 |
16 |
177.315503 |
165.379816 |
15.240367 |
9.769396e-50 |
|
|
|
| LF.7.7.1 |
188 |
12 |
171.640098 |
155.779953 |
34.440094 |
6.616689e-54 |
|
|
|
| LF.7.3.1 |
26 |
16 |
171.581856 |
164.253148 |
17.493704 |
3.171659e-50 |
|
|
|
| LF.7.9 |
20 |
12 |
158.117910 |
151.048026 |
43.903947 |
5.840201e-56 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2144_G|A, 2790_C|T, 2902_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6286_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 20238_G|T, 21641_G|T, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28467_A|T, 28881_G|A,
28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ288067
| Target: 530 samples | Number of changes: 142 | |
| BC: XFG.3 + KP.2.3 | BC BR: 112-113 | BC BR coord: 25216 - 25217 |
| Direction L1: >> | Initial region span: 1-112,117-142 | Gap history (edge excluded): 112-117 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.19e-03 | |
| Rec. model vs L1: 2.13e-12 | Rec. model vs L2: 2.91e-105 | |
| Flags: Model_1BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
112 |
204.434040 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3.1 |
87 |
109 |
197.771630 |
196.677218 |
-105.354436 |
4.264566e-04 |
* |
|
|
| LF.7 |
58 |
112 |
190.829205 |
190.829205 |
-93.658410 |
1.234308e-06 |
|
* |
|
| XFG.2 |
500 |
138 |
189.420789 |
175.301596 |
-62.603191 |
2.222441e-13 |
|
|
|
| XFG.1 |
14 |
112 |
161.065352 |
161.065352 |
-34.130704 |
1.460994e-19 |
|
* |
|
| LF.7.4 |
15 |
90 |
126.270585 |
107.691824 |
72.616352 |
9.642294e-43 |
|
|
|
| LF.7.3.1 |
26 |
112 |
116.688624 |
116.688624 |
54.622752 |
7.813231e-39 |
|
* |
|
| LF.7.9 |
20 |
90 |
114.674067 |
104.495420 |
79.009160 |
3.950113e-44 |
|
|
|
| LF.7.1 |
165 |
90 |
113.487679 |
103.272409 |
81.455183 |
1.160376e-44 |
|
|
|
| LF.7.1.8 |
44 |
138 |
110.346683 |
106.082452 |
75.835097 |
1.927375e-43 |
|
|
|
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
117 |
26.156199 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3.1 |
87 |
117 |
23.062675 |
-7.225622 |
88.451244 |
8.032020e-11 |
|
* |
|
| KP.2 |
1589 |
114 |
22.514011 |
21.740280 |
30.519441 |
3.049049e+02 |
* |
|
|
| BA.2.86.1 |
1343 |
117 |
22.514000 |
10.425142 |
53.149716 |
3.716399e-03 |
* |
* |
|
| JN.1.7 |
1974 |
117 |
20.286196 |
1.417127 |
71.165747 |
4.540766e-07 |
|
* |
|
| XFG.1 |
14 |
117 |
20.242476 |
-20.160215 |
114.320429 |
1.937428e-16 |
|
* |
|
| XFG.3 |
480 |
117 |
20.189990 |
-10.109868 |
94.219735 |
4.486268e-12 |
|
* |
|
| KP.2.2 |
1334 |
117 |
18.859660 |
-9.256657 |
92.513314 |
1.054890e-11 |
|
* |
|
| LP.8.1.1 |
2345 |
117 |
18.034668 |
-1.303536 |
76.607071 |
2.991218e-08 |
|
* |
|
| JN.1.32 |
436 |
117 |
17.998828 |
-3.390981 |
80.781963 |
3.718297e-09 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 17463_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21995_21997, 22032_T|C, 22033_C|A, 22034_A|G,
22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A,
22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25445_G|T, 25584_C|T, 26028_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29367_C|T, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ288069
| Target: 530 samples | Number of changes: 145 | |
| BC: XFG.3 + XDD.1.1 + XFG.3 | BC BR: 133-134, 138-139 | BC BR coord: 27915 - 27916, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-133,135-138,139-145 | Gap history (edge excluded): 133-139 -> 133-135 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.18e-07 | |
| Rec. model vs L1: 1.78e-07 | Rec. model vs L2: 6.04e-297 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
133 |
222.713158 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
133 |
211.023960 |
224.588076 |
-111.176152 |
8.589243e-06 |
|
* |
|
| LF.7 |
58 |
133 |
209.386332 |
220.511282 |
-103.022563 |
1.452223e-07 |
|
* |
|
| XFG.3.1 |
87 |
133 |
204.279382 |
217.236298 |
-96.472595 |
5.491854e-09 |
|
* |
|
| XFG.1 |
14 |
133 |
154.875852 |
168.561007 |
0.877987 |
3.985062e-30 |
|
* |
|
| LF.7.3.1 |
26 |
133 |
124.648534 |
122.184886 |
93.630229 |
2.884220e-50 |
|
* |
|
| LF.7.1.8 |
44 |
133 |
121.420590 |
118.906272 |
100.187455 |
1.085282e-51 |
|
* |
|
| LF.7.1 |
165 |
133 |
118.390858 |
127.569470 |
82.861060 |
6.290776e-48 |
|
* |
|
| LF.7.3 |
54 |
133 |
115.594277 |
113.215491 |
111.569019 |
3.667811e-54 |
|
* |
|
| LF.7.6 |
15 |
133 |
114.046898 |
111.562751 |
114.874498 |
7.044028e-55 |
|
* |
|
| |||||
XDD.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XDD.1.1 |
29 |
135 |
11.897939 |
NaN |
NaN |
NaN |
* |
* |
* |
| JG.3 |
1482 |
135 |
8.733629 |
-1.266371 |
20.532743 |
4.221414e-02 |
* |
* |
|
| HK.3 |
1830 |
135 |
7.805379 |
-2.194621 |
22.389242 |
1.665575e-02 |
* |
* |
|
| JN.1.3 |
111 |
138 |
6.944593 |
-17.857062 |
53.714123 |
2.633374e-09 |
|
|
|
| XBB.1.5.43 |
48 |
137 |
6.686486 |
-12.548384 |
43.096767 |
5.302061e-07 |
|
|
|
| GK.2.1 |
255 |
135 |
6.461610 |
-9.629140 |
37.258280 |
9.830704e-06 |
|
* |
|
| BW.1 |
131 |
138 |
5.680314 |
-13.573433 |
45.146867 |
1.902361e-07 |
|
|
|
| XBB.1.16.6 |
4784 |
134 |
5.042190 |
5.042190 |
7.915619 |
2.310387e+01 |
* |
* |
|
| XBB.1.16.9 |
377 |
138 |
4.623266 |
-5.947702 |
29.895405 |
3.897520e-04 |
* |
|
|
| BA.2.76 |
427 |
138 |
4.498727 |
-14.752670 |
47.505340 |
5.845550e-08 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
139 |
13.542054 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4822_A|G, 5239_C|T, 6183_A|G, 6351_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9989_A|G, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17676_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19273_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21653_T|C, 21711_C|T, 21830_G|A,
21941_G|T, 21987_G|A, 21992_21994, 22016_T|C, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28268_A|C, 28271_A|T, 28297_T|C, 28311_C|T, 28467_A|T,
28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ288088
| Target: 530 samples | Number of changes: 138 | |
| BC: BA.2.86.1 + XFG.3.1 | BC BR: 7-8 | BC BR coord: 3150 - 3151 |
| Direction L1: << | Initial region span: 1-7,8-138 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.17e-04 | |
| Rec. model vs L1: 1.90e-99 | Rec. model vs L2: 1.91e-12 | |
| Flags: Model_1BP_Best | | |
BA.2.86.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BA.2.86.1 |
1343 |
7 |
9.416509 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
6 |
6.528453 |
4.775698 |
10.448604 |
9.657698e-03 |
* |
* |
|
| KP.3.1.1 |
12013 |
6 |
6.209902 |
4.924620 |
10.150760 |
1.122064e-02 |
* |
* |
|
| XFJ.3 |
14 |
3 |
4.718819 |
-14.200087 |
48.400173 |
5.547992e-11 |
|
|
|
| MC.28.1 |
17 |
3 |
4.718819 |
-14.200087 |
48.400173 |
5.547992e-11 |
|
|
|
| KP.2.14.1 |
13 |
3 |
4.718819 |
-24.526872 |
69.053744 |
1.819891e-15 |
|
|
|
| KP.2.11 |
40 |
3 |
4.718819 |
-14.200087 |
48.400173 |
5.547992e-11 |
|
|
|
| KP.2.10 |
47 |
3 |
4.718819 |
-14.200087 |
48.400173 |
5.547992e-11 |
|
|
|
| KP.1.1.2 |
12 |
3 |
4.718819 |
-24.179757 |
68.359513 |
2.569667e-15 |
|
|
|
| MC.29 |
54 |
3 |
4.718819 |
-23.971313 |
67.942626 |
3.170142e-15 |
|
|
|
| |||||
XFG.3.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3.1 |
87 |
8 |
275.022935 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
8 |
269.407538 |
269.407538 |
-206.815075 |
3.642810e-03 |
* |
* |
|
| LF.7 |
58 |
8 |
263.891557 |
263.891557 |
-195.783115 |
1.459254e-05 |
* |
* |
|
| XFG.2 |
500 |
8 |
252.472597 |
252.472597 |
-172.945193 |
1.609383e-10 |
|
* |
|
| XFG.1 |
14 |
8 |
226.542569 |
226.542569 |
-121.085137 |
8.818679e-22 |
|
* |
|
| LF.7.3.1 |
26 |
14 |
190.504865 |
179.848698 |
-27.697395 |
4.634711e-42 |
|
|
|
| LF.7.7.1 |
188 |
14 |
186.509746 |
167.051295 |
-2.102590 |
1.279538e-47 |
|
|
|
| LF.7.1 |
165 |
14 |
185.063873 |
174.428577 |
-16.857154 |
2.051855e-44 |
|
|
|
| LF.7.9 |
20 |
14 |
178.128088 |
167.405781 |
-2.811562 |
1.824853e-47 |
|
|
|
| LF.7.1.8 |
44 |
14 |
176.080516 |
165.463569 |
1.072861 |
2.622386e-48 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1784_G|A, 2790_C|T, 3037_C|T, 3140_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4354_G|A, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A,
22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28372_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ296928
| Target: 530 samples | Number of changes: 154 | |
| BC: XEC.2.2.1 + XFG.3 | BC BR: 6-7 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-6,9-154 | Gap history (edge excluded): 6-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.47e-01 | |
| Rec. model vs L1: 3.27e-226 | Rec. model vs L2: 1.04e-07 | |
| Flags: Model_1BP_Best | | |
XEC.2.2.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2.2.1 |
46 |
6 |
16.305367 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.33 |
169 |
6 |
13.283043 |
13.283043 |
-10.566087 |
4.880122e-02 |
* |
* |
|
| KP.2.3.8 |
103 |
6 |
12.992899 |
12.992899 |
-9.985799 |
3.651617e-02 |
* |
* |
|
| JN.1 |
17255 |
8 |
11.613198 |
8.214080 |
-0.428160 |
3.065898e-04 |
* |
|
|
| JN.1.8.1 |
1498 |
7 |
10.262360 |
9.645172 |
-3.290343 |
1.281146e-03 |
* |
* |
|
| LF.7.9.3 |
20 |
3 |
7.111420 |
1.825673 |
12.348653 |
5.145362e-07 |
|
|
|
| XFB.3 |
56 |
3 |
6.955858 |
1.670112 |
12.659776 |
4.406566e-07 |
|
|
|
| NY.12.1 |
17 |
3 |
6.912387 |
-4.824274 |
25.648547 |
6.658212e-10 |
|
|
|
| XEL.5 |
19 |
3 |
6.879637 |
1.593891 |
12.812218 |
4.088163e-07 |
|
|
|
| MC.13.2.4 |
37 |
3 |
6.742160 |
-6.379166 |
28.758332 |
1.406144e-10 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
317.866398 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
316.350487 |
296.350487 |
-250.700975 |
2.198082e-01 |
* |
* |
|
| XFG.2 |
500 |
9 |
312.830902 |
285.292272 |
-228.584545 |
3.457378e-06 |
|
* |
|
| XFG.3.1 |
87 |
9 |
284.123042 |
264.123042 |
-186.246084 |
2.222819e-15 |
|
* |
|
| XFG.1 |
14 |
20 |
267.431167 |
247.190678 |
-152.381355 |
9.820354e-23 |
|
|
|
| LF.7.1 |
165 |
20 |
240.146539 |
204.660805 |
-67.321609 |
3.323402e-41 |
|
|
|
| LF.7.7.1 |
188 |
20 |
225.786977 |
187.165042 |
-32.330084 |
8.386888e-49 |
|
|
|
| LF.7.1.8 |
44 |
20 |
219.625870 |
184.118082 |
-26.236163 |
3.991849e-50 |
|
|
|
| LF.7.6 |
15 |
20 |
212.805087 |
183.024657 |
-24.049313 |
1.335432e-50 |
|
|
|
| LF.7.1.2 |
26 |
20 |
210.437974 |
174.898264 |
-7.796528 |
3.953475e-54 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 533_G|A, 670_T|G, 897_C|A, 1601_C|T, 2500_A|C, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4795_C|T, 5239_C|T, 6183_A|G, 7760_G|A,
7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T,
12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24095_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ296975
| Target: 530 samples | Number of changes: 156 | |
| BC: XFG.3 + XDD.1.1 + XFG.3 | BC BR: 143-144, 149-150 | BC BR coord: 27915 - 27916, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-143,145-149,150-156 | Gap history (edge excluded): 143-150 -> 143-145 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.15e-07 | |
| Rec. model vs L1: 1.59e-07 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
143 |
290.889872 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
143 |
278.898197 |
290.023147 |
-240.046294 |
5.546104e-07 |
|
* |
|
| XFG.2 |
500 |
143 |
268.893236 |
282.457353 |
-224.914705 |
2.860084e-10 |
|
* |
|
| XFG.3.1 |
87 |
143 |
243.743179 |
256.700095 |
-173.400191 |
1.866914e-21 |
|
* |
|
| XFG.1 |
14 |
143 |
225.223539 |
238.908693 |
-137.817386 |
3.507725e-29 |
|
* |
|
| LF.7.1 |
165 |
143 |
188.084215 |
197.262826 |
-54.525652 |
2.876285e-47 |
|
* |
|
| LF.7.6 |
15 |
143 |
185.217225 |
182.733078 |
-25.466157 |
1.407774e-53 |
|
* |
|
| LF.7.7.1 |
188 |
143 |
182.099682 |
186.410565 |
-32.821130 |
5.553480e-52 |
|
* |
|
| LF.7.1.8 |
44 |
143 |
177.600079 |
175.085761 |
-10.171522 |
6.701627e-57 |
|
* |
|
| LF.7.3 |
54 |
143 |
173.829884 |
171.451098 |
-2.902196 |
1.768153e-58 |
|
* |
|
| |||||
XDD.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XDD.1.1 |
29 |
145 |
13.385163 |
NaN |
NaN |
NaN |
* |
* |
* |
| JG.3 |
1482 |
145 |
10.138247 |
0.138247 |
17.723506 |
3.896856e-02 |
* |
* |
|
| HK.3 |
1830 |
145 |
9.256169 |
-0.743831 |
19.487662 |
1.608288e-02 |
* |
* |
|
| JN.1.3 |
111 |
147 |
8.464940 |
-16.336019 |
50.672039 |
2.727174e-09 |
|
|
|
| XBB.1.5.43 |
48 |
147 |
8.201786 |
-11.033084 |
40.066167 |
5.463533e-07 |
|
|
|
| GK.2.1 |
255 |
145 |
7.855661 |
-8.235089 |
34.470179 |
8.984587e-06 |
|
* |
|
| BW.1 |
131 |
147 |
7.218843 |
-12.016026 |
42.032053 |
2.050525e-07 |
|
|
|
| XBB.1.16.6 |
4784 |
144 |
6.553074 |
6.553074 |
4.893853 |
2.380748e+01 |
* |
* |
|
| BA.2.76 |
427 |
147 |
6.030217 |
-13.204653 |
44.409305 |
6.238132e-08 |
|
|
|
| BA.2.36 |
3016 |
147 |
5.869129 |
-13.366736 |
44.733472 |
5.315785e-08 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
150 |
13.542054 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4822_A|G, 5239_C|T, 6183_A|G, 6351_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9989_A|G, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19273_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21830_G|A, 21941_G|T, 21987_G|A, 21992_21994, 22016_T|C, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G,
22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A,
22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28268_A|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28467_A|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): OZ297519
| Target: 530 samples | Number of changes: 155 | |
| BC: XFG.3 + KP.3.1.1 | BC BR: 135-136 | BC BR coord: 27263 - 27264 |
| Direction L1: >> | Initial region span: 1-135,137-155 | Gap history (edge excluded): 135-137 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.14e-03 | |
| Rec. model vs L1: 4.97e-15 | Rec. model vs L2: 2.24e-124 | |
| Flags: Model_1BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
135 |
291.500604 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
135 |
286.560164 |
286.560164 |
-259.120328 |
7.154598e-03 |
* |
* |
|
| LF.7 |
58 |
153 |
281.815826 |
274.611423 |
-235.222846 |
4.621322e-08 |
|
|
|
| XFG.3.1 |
87 |
135 |
239.067128 |
239.067128 |
-164.134256 |
1.689541e-23 |
|
* |
|
| XFG.1 |
14 |
135 |
223.216992 |
223.216992 |
-132.433984 |
2.209028e-30 |
|
* |
|
| LF.7.7.1 |
188 |
153 |
205.103504 |
201.808054 |
-89.616108 |
1.117192e-39 |
|
|
|
| LF.7.1 |
165 |
135 |
196.525100 |
196.525100 |
-79.050200 |
5.660849e-42 |
|
* |
|
| LF.7.1.8 |
44 |
135 |
189.566806 |
189.566806 |
-65.133611 |
5.372693e-45 |
|
* |
|
| LF.7.6 |
15 |
135 |
181.215978 |
181.215978 |
-48.431956 |
1.270086e-48 |
|
* |
|
| LF.7.3.1 |
26 |
135 |
174.696536 |
174.696536 |
-35.393072 |
1.871686e-51 |
|
* |
|
| |||||
KP.3.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
137 |
16.044568 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
138 |
15.166261 |
-4.833739 |
59.667477 |
1.883112e-05 |
* |
* |
|
| BA.2.86.1 |
1343 |
138 |
8.957968 |
-11.042032 |
72.084064 |
3.802584e-08 |
|
* |
|
| NL.11 |
57 |
146 |
8.679461 |
-27.727278 |
105.454556 |
2.157125e-15 |
|
|
|
| FU.1 |
747 |
153 |
6.961561 |
-43.339202 |
136.678404 |
3.567525e-22 |
|
|
|
| MC.24 |
831 |
138 |
6.556822 |
-13.443178 |
76.886356 |
3.432421e-09 |
|
* |
|
| LF.7 |
58 |
138 |
5.993742 |
-14.006258 |
78.012517 |
1.960630e-09 |
|
* |
|
| LB.1.3 |
778 |
142 |
3.560375 |
-22.057930 |
94.115859 |
6.225204e-13 |
|
|
|
| JN.1.1 |
3081 |
142 |
3.247294 |
-22.377540 |
94.755079 |
4.520426e-13 |
|
|
|
| XFG.3.1 |
87 |
142 |
2.834986 |
-22.782033 |
95.564066 |
3.030132e-13 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 1758_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3569_A|G, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27289_G|T,
27373, 27382_G|C, 27383_A|T, 27384_T|C, 27792_27793, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29682_29683, 29693_T|C
Case 58 (XFG): OZ297591
| Target: 530 samples | Number of changes: 155 | |
| BC: BQ.1.10 + XFG.3 | BC BR: 8-9 | BC BR coord: 2512 - 2513 |
| Direction L1: << | Initial region span: 1-4,9-155 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 8.48e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BQ.1.10 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BQ.1.10 |
2048 |
4 |
6.071544 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.11 |
67 |
3 |
5.085550 |
-31.287095 |
88.574190 |
2.318339e-10 |
|
* |
|
| KP.2.3.10 |
10 |
3 |
4.790433 |
-31.582212 |
89.164424 |
1.726077e-10 |
|
* |
|
| DN.3 |
10 |
3 |
4.685073 |
-48.767248 |
123.534496 |
5.938946e-18 |
|
* |
|
| BF.5.5 |
91 |
3 |
4.661600 |
-48.338270 |
122.676541 |
9.084155e-18 |
|
* |
|
| PL.1.1 |
12 |
3 |
4.608112 |
-31.764534 |
89.529067 |
1.434550e-10 |
|
* |
|
| BA.2.75.2 |
753 |
4 |
4.491154 |
-11.625361 |
49.250722 |
8.005831e-02 |
* |
* |
|
| BN.1.1.1 |
41 |
3 |
4.453366 |
-45.546634 |
117.093268 |
1.486407e-16 |
|
* |
|
| CM.4 |
76 |
3 |
4.148579 |
-58.425110 |
142.850219 |
3.788128e-22 |
|
* |
|
| PD.2 |
21 |
3 |
4.048496 |
-38.934158 |
103.868317 |
1.103632e-13 |
|
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
297.369129 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
8 |
292.061966 |
291.675165 |
-241.350330 |
3.362737e-03 |
* |
* |
|
| LF.7 |
58 |
9 |
281.650636 |
281.650636 |
-221.301272 |
1.488986e-07 |
|
* |
|
| XFG.3.1 |
87 |
9 |
249.645042 |
249.645042 |
-157.290084 |
1.876272e-21 |
|
* |
|
| XFG.1 |
14 |
9 |
232.798710 |
232.798710 |
-123.597419 |
9.069959e-29 |
|
* |
|
| LF.7.7.1 |
188 |
15 |
194.306068 |
184.863763 |
-27.727526 |
1.379429e-49 |
|
|
|
| LF.7.1 |
165 |
15 |
190.644805 |
190.020322 |
-38.040643 |
2.390492e-47 |
|
|
|
| LF.7.1.8 |
44 |
15 |
183.800033 |
183.193899 |
-24.387797 |
2.596734e-50 |
|
|
|
| LF.7.1.2 |
26 |
15 |
169.255147 |
168.570572 |
4.858856 |
1.155768e-56 |
|
|
|
| LF.7.6 |
15 |
15 |
168.565878 |
167.959744 |
6.080511 |
6.279876e-57 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 684_T|C, 897_C|A, 1263_C|T, 2334_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11173_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T,
12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18828_C|T, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T,
21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G,
22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A,
22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|A, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 27942_C|T, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29409_C|T, 29510_A|C, 29645_G|T
Case 58 (XFG): USA/CA-CDPH-500147587/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: FL.29 + XFG.3 | BC BR: 3-4 | BC BR coord: 1960 - 1961 |
| Direction L1: << | Initial region span: 1-3,4-152 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.09e-14 | |
| Flags: Model_2BP_Bad_L1_opp | | |
FL.29 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| FL.29 |
37 |
3 |
4.711568 |
NaN |
NaN |
NaN |
* |
* |
* |
| DS.3 |
91 |
3 |
4.062575 |
4.062575 |
1.874850 |
0.524663 |
* |
* |
|
| JN.1.42.1 |
18 |
3 |
4.058777 |
4.058777 |
1.882447 |
0.522046 |
* |
* |
|
| BA.2.86 |
38 |
3 |
3.073585 |
3.073585 |
3.852830 |
0.194952 |
* |
* |
|
| BA.5.1.30 |
4775 |
3 |
3.037057 |
3.037057 |
3.925885 |
0.187308 |
* |
* |
|
| BA.5.1.12 |
592 |
3 |
2.876304 |
2.876304 |
4.247392 |
0.159614 |
* |
* |
|
| HN.8 |
13 |
3 |
2.813097 |
2.813097 |
4.373805 |
0.150318 |
* |
* |
|
| BN.1.5 |
1025 |
3 |
2.731778 |
2.731778 |
4.536444 |
0.138069 |
* |
* |
|
| BN.1.3.1 |
1042 |
3 |
2.308064 |
2.308064 |
5.383873 |
0.090718 |
* |
* |
|
| BA.2.75.2 |
753 |
3 |
1.944050 |
1.944050 |
6.111900 |
0.062976 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
4 |
284.794795 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
4 |
266.630867 |
259.092237 |
-170.184474 |
6.862152e-12 |
|
* |
|
| LF.7 |
58 |
4 |
259.956453 |
259.956453 |
-171.912907 |
1.629765e-11 |
|
* |
|
| XFG.3.1 |
87 |
4 |
255.385880 |
255.385880 |
-162.771760 |
1.688104e-13 |
|
* |
|
| XFG.1 |
14 |
4 |
224.571728 |
224.571728 |
-101.143455 |
6.992216e-27 |
|
* |
|
| LF.7.7.1 |
188 |
10 |
192.035626 |
182.593321 |
-17.186642 |
4.121962e-45 |
|
|
|
| LF.7.1 |
165 |
10 |
191.785480 |
191.160997 |
-34.321995 |
2.161903e-41 |
|
|
|
| LF.7.1.8 |
44 |
33 |
172.591950 |
163.169373 |
21.661254 |
1.509849e-53 |
|
|
|
| LF.7.6 |
15 |
33 |
163.576197 |
159.880978 |
28.238044 |
5.624770e-55 |
|
|
|
| LF.7.1.2 |
26 |
33 |
162.505401 |
153.050903 |
41.898195 |
6.079579e-58 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 1960_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6286_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10156_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11681_C|T, 11727_G|A, 12469_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24328_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26058_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29249_C|T, 29409_C|T, 29510_A|C
Case 58 (XFG): USA/CA-GBW-GKISBBBE69940/2025
| Target: 530 samples | Number of changes: 151 | |
| BC: LF.7 + NL.11 + LF.7 | BC BR: 4-5, 7-8 | BC BR coord: 672 - 673, 2789 - 2790 |
| Direction L1: << | Initial region span: 1-4,5-7,8-151 | Gap history (edge excluded): 4-8 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.08e-05 | |
| Rec. model vs L1: 1.27e-14 | Rec. model vs L2: 6.30e-205 | |
| Flags: Model_2BP_Best | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
4 |
6.259952 |
None |
None |
None |
* |
* |
* |
| |||||
NL.11 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NL.11 |
57 |
5 |
9.486351 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.42.2 |
28 |
6 |
8.220027 |
-1.779973 |
9.559946 |
1.281364e-05 |
* |
* |
|
| MC.10.1.7 |
11 |
6 |
8.092091 |
-1.907909 |
9.815817 |
1.125160e-05 |
* |
* |
|
| JN.1.15.1 |
15 |
6 |
7.712944 |
-2.287056 |
10.574113 |
7.733106e-06 |
|
* |
|
| JN.1.13 |
24 |
6 |
7.269373 |
-2.730627 |
11.461253 |
4.955562e-06 |
|
* |
|
| MH.1 |
51 |
6 |
7.169630 |
-2.830370 |
11.660739 |
4.483978e-06 |
|
* |
|
| BA.2.26 |
600 |
7 |
6.860964 |
-13.139036 |
32.278072 |
1.493095e-10 |
|
|
|
| MC.13.1 |
123 |
6 |
6.760021 |
-3.239979 |
12.479958 |
2.975793e-06 |
|
* |
|
| MC.1.2 |
49 |
6 |
6.598166 |
-3.401834 |
12.803667 |
2.535804e-06 |
|
* |
|
| KP.2.8 |
51 |
6 |
6.558161 |
-3.441839 |
12.883678 |
2.436373e-06 |
|
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
8 |
339.385844 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
8 |
338.775564 |
344.799659 |
-347.599318 |
4.295574e-01 |
* |
* |
|
| XFG.2 |
500 |
8 |
332.375070 |
336.310896 |
-330.621791 |
8.827973e-05 |
* |
* |
|
| XFG.3.1 |
87 |
8 |
303.976289 |
309.017670 |
-276.035339 |
1.241551e-16 |
|
* |
|
| XFG.1 |
14 |
8 |
275.682307 |
280.040099 |
-218.080198 |
3.221889e-29 |
|
* |
|
| LF.7.1 |
165 |
14 |
247.879235 |
252.484203 |
-162.968406 |
3.476371e-41 |
|
|
|
| LF.7.7.1 |
188 |
14 |
239.084093 |
233.933701 |
-125.867402 |
3.054664e-49 |
|
|
|
| LF.7.1.8 |
44 |
14 |
226.485303 |
229.533144 |
-117.066289 |
3.750315e-51 |
|
|
|
| LF.7.1.2 |
26 |
14 |
220.581658 |
224.626234 |
-107.252468 |
2.764915e-53 |
|
|
|
| PC.3 |
42 |
14 |
218.363457 |
221.932793 |
-101.865586 |
1.876850e-54 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2003_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 13427_G|A, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY12256/2025
| Target: 530 samples | Number of changes: 150 | |
| BC: JN.11 + XFG.2 | BC BR: 4-5 | BC BR coord: 2067 - 2068 |
| Direction L1: << | Initial region span: 1-4,5-150 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.51e-229 | Rec. model vs L2: 8.32e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
4 |
8.712905 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
4 |
8.417788 |
8.417788 |
-2.835576 |
0.744532 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
8.235466 |
-2.470933 |
0.618783 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
1.065842 |
11.868317 |
0.000476 |
* |
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
-0.408730 |
14.817461 |
0.000109 |
* |
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
0.164265 |
13.671469 |
0.000194 |
* |
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
7.277693 |
-0.555386 |
0.238115 |
* |
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
7.254637 |
-0.509274 |
0.232236 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
7.162322 |
-0.324644 |
0.211189 |
* |
* |
|
| LP.8.1.10 |
32 |
4 |
7.156197 |
0.546188 |
12.907624 |
0.000283 |
* |
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
5 |
328.815526 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
1 |
327.929777 |
323.397837 |
-308.795673 |
4.449338e-03 |
* |
|
|
| LF.7 |
58 |
4 |
316.567111 |
312.939756 |
-287.879512 |
1.275191e-07 |
|
* |
|
| XFG.3.1 |
87 |
4 |
284.800151 |
281.172796 |
-224.345592 |
2.042730e-21 |
|
* |
|
| XFG.1 |
14 |
4 |
269.199060 |
265.571706 |
-193.143411 |
3.412287e-28 |
|
* |
|
| LF.7.1 |
165 |
1 |
238.824969 |
232.547938 |
-127.095876 |
1.558266e-42 |
|
|
|
| LF.7.1.8 |
44 |
4 |
207.698916 |
204.118082 |
-70.236163 |
7.008895e-55 |
|
* |
|
| LF.7.7.1 |
188 |
11 |
202.783973 |
193.341668 |
-48.683335 |
1.458663e-59 |
|
|
|
| LF.7.2.1 |
67 |
4 |
193.721203 |
190.124154 |
-42.248307 |
5.857311e-61 |
|
* |
|
| LF.7.6 |
15 |
4 |
192.551537 |
188.924182 |
-39.848364 |
1.764188e-61 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9370_T|C, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14407_C|T,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 16887_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759, 29762_C|T
Case 58 (XFG): USA/CA-LACPHL-AY12331/2025
| Target: 530 samples | Number of changes: 157 | |
| BC: JN.1.39.1 + XFG.3 | BC BR: 7-8 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,12-157 | Gap history (edge excluded): 4-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.55e-208 | Rec. model vs L2: 1.32e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.39.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.39.1 |
40 |
4 |
10.004107 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3 |
4440 |
11 |
8.183088 |
6.529182 |
0.941637 |
6.110447 |
* |
|
|
| KP.3.1.1 |
12013 |
10 |
8.044589 |
7.668120 |
-1.336240 |
19.105954 |
* |
|
|
| MC.1.4 |
125 |
4 |
8.028188 |
2.742441 |
8.515117 |
0.138069 |
* |
* |
|
| JN.1.65.1 |
46 |
4 |
7.964333 |
2.656608 |
8.686784 |
0.126818 |
* |
* |
|
| KP.4 |
35 |
4 |
7.765644 |
2.479897 |
9.040205 |
0.106459 |
* |
* |
|
| MC.29 |
54 |
4 |
7.024352 |
1.738605 |
10.522790 |
0.050793 |
* |
* |
|
| LP.8.1.1 |
2345 |
7 |
6.709351 |
6.709351 |
0.581298 |
7.315534 |
* |
|
|
| JN.9 |
55 |
4 |
6.041964 |
0.737868 |
12.524264 |
0.018686 |
* |
* |
|
| NY.7.1 |
28 |
4 |
5.870125 |
0.548011 |
12.903978 |
0.015452 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
12 |
283.953713 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
12 |
281.314074 |
262.377777 |
-176.755553 |
7.100535e-02 |
* |
* |
|
| XFG.2 |
500 |
9 |
271.587245 |
263.886152 |
-179.772304 |
3.198190e-01 |
* |
|
|
| XFG.3.1 |
87 |
12 |
261.076804 |
242.157898 |
-136.315796 |
1.174510e-10 |
|
* |
|
| XFG.1 |
14 |
12 |
246.130355 |
227.211449 |
-106.422899 |
3.777062e-17 |
|
* |
|
| LF.7.7.1 |
188 |
18 |
205.103639 |
179.552840 |
-11.105679 |
7.600648e-38 |
|
|
|
| LF.7.1 |
165 |
18 |
203.360460 |
184.752458 |
-21.504917 |
1.370915e-35 |
|
|
|
| LF.7.1.8 |
44 |
18 |
194.998404 |
165.462551 |
17.074897 |
5.776189e-44 |
|
|
|
| LF.7.6 |
15 |
18 |
191.770351 |
162.234498 |
23.531003 |
2.284916e-45 |
|
|
|
| LF.7.3 |
54 |
18 |
188.534008 |
158.922305 |
30.155390 |
8.302024e-47 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 174_G|T, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3049_T|C, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G,
7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T,
12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16173_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28473_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29367_C|T,
29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY12367/2025
| Target: 530 samples | Number of changes: 156 | |
| BC: XFG.3 + BA.2.38 + XFG.3 | BC BR: 145-146, 150-151 | BC BR coord: 28361 - 28362, 28883 - 28884 |
| Direction L1: >> | Initial region span: 1-145,146-150,154-156 | Gap history (edge excluded): 145-154 -> 150-154 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.19e-05 | |
| Rec. model vs L1: 4.09e-13 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
145 |
266.186454 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
145 |
265.971646 |
255.442099 |
-166.884199 |
7.171897e-02 |
* |
* |
|
| XFG.2 |
500 |
145 |
259.041385 |
250.951004 |
-157.902009 |
8.047330e-04 |
* |
* |
|
| XFG.3.1 |
87 |
145 |
243.919801 |
235.222221 |
-126.444442 |
1.186314e-10 |
|
* |
|
| XFG.1 |
14 |
145 |
228.245114 |
220.275772 |
-96.551544 |
3.834145e-17 |
|
* |
|
| LF.7.1 |
165 |
145 |
201.087613 |
188.629965 |
-33.259930 |
6.924999e-31 |
|
* |
|
| LF.7.6 |
15 |
145 |
186.244100 |
162.105457 |
19.789086 |
2.092949e-42 |
|
* |
|
| LF.7.7.1 |
188 |
145 |
184.706097 |
167.362483 |
9.275033 |
4.008446e-40 |
|
* |
|
| LF.7.1.8 |
44 |
145 |
182.626179 |
158.457365 |
27.085271 |
5.439810e-44 |
|
* |
|
| LF.7.3 |
54 |
145 |
176.001218 |
151.967935 |
40.064129 |
8.302024e-47 |
|
* |
|
| |||||
BA.2.38 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BA.2.38 |
911 |
150 |
9.861020 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.1.42 |
71 |
146 |
7.808425 |
-0.537078 |
15.074157 |
3.058503e-05 |
* |
|
|
| XBB.1.5.33 |
820 |
150 |
6.914078 |
6.914078 |
0.171844 |
5.260206e-02 |
* |
* |
|
| JD.1 |
35 |
146 |
6.723997 |
-1.621506 |
17.243012 |
1.033474e-05 |
* |
|
|
| HN.3.1 |
55 |
146 |
6.272012 |
-2.073491 |
18.146982 |
6.556852e-06 |
|
|
|
| AD.2 |
3211 |
146 |
6.011670 |
-2.336637 |
18.673275 |
5.055671e-06 |
|
|
|
| XBB.1.5.85 |
30 |
146 |
5.779536 |
-2.565968 |
19.131935 |
4.016900e-06 |
|
|
|
| AY.109 |
471 |
146 |
5.075648 |
-35.961016 |
85.922033 |
1.260744e-20 |
|
|
|
| JN.1.32 |
436 |
146 |
5.049001 |
-3.296502 |
20.593005 |
1.935780e-06 |
|
|
|
| MC.23 |
64 |
146 |
5.021850 |
-3.323653 |
20.647307 |
1.878569e-06 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
154 |
8.279257 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 174_G|T, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16173_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20235_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28473_C|A, 28817_G|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29367_C|T,
29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY12442/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: KP.3.1.1 + XFG.3 | BC BR: 10-11 | BC BR coord: 3773 - 3774 |
| Direction L1: << | Initial region span: 1-9,11-153 | Gap history (edge excluded): 9-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.37e-05 | |
| Rec. model vs L1: 1.73e-128 | Rec. model vs L2: 9.81e-15 | |
| Flags: Model_1BP_Best | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
9 |
13.231814 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
9 |
12.499233 |
9.829579 |
6.340841 |
8.374323e-02 |
* |
* |
|
| JN.1.65 |
124 |
9 |
9.792360 |
-0.207640 |
26.415280 |
3.652860e-06 |
|
* |
|
| JN.1.11.1 |
226 |
4 |
9.089588 |
-2.624465 |
31.248930 |
3.264464e-07 |
|
|
|
| KP.1.1 |
593 |
4 |
8.164083 |
-3.549315 |
33.098629 |
1.294463e-07 |
|
|
|
| MC.42 |
84 |
9 |
7.714779 |
-2.285221 |
30.570442 |
4.586401e-07 |
|
* |
|
| LP.8.1.1 |
2345 |
4 |
6.795103 |
0.039528 |
25.920945 |
4.690366e-06 |
|
|
|
| JN.1.8.1 |
1498 |
9 |
5.526092 |
-4.473908 |
34.947815 |
5.132951e-08 |
|
* |
|
| LF.7.3.5 |
16 |
3 |
4.718819 |
-16.963892 |
59.927783 |
1.932098e-13 |
|
|
|
| LD.2 |
13 |
3 |
4.718819 |
-31.985883 |
89.971766 |
5.793299e-20 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
11 |
268.953360 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.1 |
14 |
11 |
258.818365 |
258.818365 |
-185.636729 |
3.966664e-05 |
* |
* |
|
| LF.7 |
58 |
11 |
253.575487 |
253.575487 |
-175.150973 |
2.091948e-07 |
|
* |
|
| XFG.2 |
500 |
11 |
242.250753 |
242.250753 |
-152.501507 |
2.524445e-12 |
|
* |
|
| XFG.3.1 |
87 |
11 |
234.418810 |
234.418810 |
-136.837620 |
1.003784e-15 |
|
* |
|
| LF.7.7.1 |
188 |
13 |
189.730052 |
171.975791 |
-11.951581 |
7.622916e-43 |
|
|
|
| LF.7.1 |
165 |
13 |
185.651765 |
176.728342 |
-21.456685 |
8.855058e-41 |
|
|
|
| LF.7.1.2 |
26 |
13 |
170.026899 |
161.103475 |
9.793049 |
1.449907e-47 |
|
|
|
| LF.7.1.8 |
44 |
13 |
165.758332 |
156.834909 |
18.330182 |
2.027228e-49 |
|
|
|
| LF.7.6 |
15 |
13 |
162.464213 |
153.540790 |
24.918419 |
7.514539e-51 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1169_T|C, 2344_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3773_C|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16224_T|C, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20134_G|T, 20320_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22595_A|T, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23371_T|C, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29200_C|T, 29409_C|T, 29510_A|C, 29651_G|T, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY12607/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: KP.2.3.10 + LF.7 | BC BR: 5-6 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-5,7-153 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.89e-01 | |
| Rec. model vs L1: 4.17e-212 | Rec. model vs L2: 5.56e-08 | |
| Flags: Model_1BP_Best | | |
KP.2.3.10 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.10 |
10 |
5 |
10.375656 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.11 |
67 |
5 |
10.021428 |
10.021428 |
-10.042857 |
0.701173 |
* |
* |
|
| KP.4.2.4 |
22 |
5 |
9.715032 |
9.715032 |
-9.430064 |
0.516851 |
* |
* |
|
| PL.1.1 |
12 |
5 |
9.317865 |
9.317865 |
-8.635731 |
0.348192 |
* |
* |
|
| XEC.2.2.1 |
46 |
5 |
9.173366 |
9.173366 |
-8.346733 |
0.301194 |
* |
* |
|
| KR.1.4 |
24 |
5 |
9.050803 |
9.050803 |
-8.101605 |
0.265803 |
* |
* |
|
| MK.1 |
151 |
5 |
8.914620 |
8.914620 |
-7.829239 |
0.232236 |
* |
* |
|
| JN.1.69 |
32 |
5 |
8.860284 |
8.860284 |
-7.720569 |
0.219808 |
* |
* |
|
| KP.3.1.2 |
28 |
5 |
8.765557 |
8.765557 |
-7.531114 |
0.199888 |
* |
* |
|
| LB.1.4.1 |
74 |
5 |
8.648070 |
8.648070 |
-7.296139 |
0.178173 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
7 |
305.098200 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
6 |
299.104506 |
291.565876 |
-241.131752 |
2.915876e-02 |
* |
* |
|
| XFG.3 |
480 |
7 |
293.171216 |
283.171216 |
-224.342433 |
6.589718e-06 |
|
* |
|
| XFG.3.1 |
87 |
7 |
259.640359 |
249.640359 |
-157.280718 |
1.807061e-20 |
|
* |
|
| XFG.1 |
14 |
18 |
257.861264 |
247.620775 |
-153.241550 |
2.397165e-21 |
|
|
|
| LF.7.1 |
165 |
23 |
223.177472 |
202.427688 |
-62.855377 |
5.674536e-41 |
|
|
|
| LF.7.1.8 |
44 |
23 |
216.438824 |
184.118082 |
-26.236163 |
6.338674e-49 |
|
|
|
| LF.7.7.1 |
188 |
23 |
208.776556 |
184.706634 |
-27.413269 |
1.137786e-48 |
|
|
|
| LF.7.6 |
15 |
23 |
195.517566 |
168.924182 |
4.151636 |
1.595489e-55 |
|
|
|
| LF.7.1.2 |
26 |
23 |
194.393647 |
162.040983 |
17.918034 |
1.632211e-58 |
|
|
|
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4222_A|G, 4321_C|T, 5239_C|T, 6183_A|G, 6312_C|T, 7842_A|G, 7869_C|T,
8293_C|T, 8326_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 18981_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY12732/2025
| Target: 530 samples | Number of changes: 159 | |
| BC: XFG.2 + BE.5 | BC BR: 153-154 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-148,156-159 | Gap history (edge excluded): 148-156 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.62e-14 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XFG.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
148 |
253.255377 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
148 |
248.327684 |
243.590481 |
-139.180962 |
7.226503e-03 |
* |
* |
|
| LF.7 |
58 |
148 |
247.650734 |
242.913531 |
-137.827062 |
3.679421e-03 |
* |
* |
|
| XFG.3.1 |
87 |
148 |
225.352179 |
220.614975 |
-93.229951 |
7.603481e-13 |
|
* |
|
| XFG.1 |
14 |
148 |
208.014349 |
203.277146 |
-58.554292 |
2.240506e-20 |
|
* |
|
| LF.7.1 |
165 |
148 |
181.692471 |
176.937031 |
-5.874061 |
8.147597e-32 |
|
* |
|
| LF.7.6 |
15 |
148 |
167.383881 |
162.646678 |
22.706644 |
5.069456e-38 |
|
* |
|
| LF.7.7.1 |
188 |
148 |
164.543438 |
159.806235 |
28.387530 |
2.961863e-39 |
|
* |
|
| LF.7.1.8 |
44 |
148 |
161.921450 |
157.184246 |
33.631507 |
2.156321e-40 |
|
* |
|
| LF.7.3 |
54 |
148 |
155.754705 |
151.017502 |
45.964997 |
4.531980e-43 |
|
* |
|
| |||||
BE.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BE.5 |
231 |
156 |
7.549258 |
NaN |
NaN |
NaN |
* |
* |
* |
| BF.38 |
60 |
157 |
7.093101 |
-22.906899 |
59.813797 |
2.880389e-05 |
* |
* |
|
| BQ.1.1.5 |
1362 |
157 |
7.023821 |
-13.289818 |
40.579637 |
4.317105e-01 |
* |
* |
|
| FY.6 |
11 |
157 |
6.947943 |
-23.052057 |
60.104113 |
2.491601e-05 |
* |
* |
|
| JN.1.1 |
3081 |
150 |
6.733092 |
1.471920 |
11.056161 |
1.110144e+06 |
* |
|
|
| PG.3 |
31 |
157 |
6.524418 |
-29.673996 |
73.347993 |
3.305807e-08 |
|
* |
|
| FY.3.3 |
33 |
157 |
6.508577 |
-23.491423 |
60.982846 |
1.604682e-05 |
* |
* |
|
| BQ.1.1.74 |
24 |
157 |
6.486239 |
-23.513761 |
61.027523 |
1.565062e-05 |
* |
* |
|
| XBB.1.5.25 |
43 |
157 |
6.222814 |
-23.777186 |
61.554373 |
1.206744e-05 |
* |
* |
|
| XEC.2 |
921 |
156 |
6.120054 |
-4.495483 |
22.990967 |
2.849788e+03 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 174_G|T, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G,
7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 14895_T|C, 15714_C|T, 15756_T|A, 16173_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20235_C|T, 21411_C|T, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28473_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29367_C|T,
29409_C|T, 29510_A|C, 29543_G|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY12742/2025
| Target: 530 samples | Number of changes: 151 | |
| BC: XFG.3 + JJ.1 + XFG.3 | BC BR: 5-6, 8-9 | BC BR coord: 2335 - 2336, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-4,6-8,9-151 | Gap history (edge excluded): 4-9 -> 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.47e-02 | |
| Rec. model vs L1: 1.19e-08 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
4 |
6.540343 |
None |
None |
None |
* |
* |
* |
| |||||
JJ.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JJ.1 |
58 |
6 |
9.078968 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.2.3 |
36 |
6 |
6.260055 |
6.260055 |
-4.520111 |
5.960594e-02 |
* |
* |
|
| XBB.1.5.3 |
150 |
6 |
5.526086 |
5.526086 |
-3.052172 |
2.858137e-02 |
* |
* |
|
| KP.2.3.5 |
89 |
6 |
5.354938 |
5.354938 |
-2.709876 |
2.411310e-02 |
* |
* |
|
| XEC.8 |
592 |
6 |
5.251827 |
5.251827 |
-2.503654 |
2.170962e-02 |
* |
* |
|
| B.1.260 |
81 |
8 |
5.061178 |
-5.066705 |
18.133410 |
7.192909e-07 |
|
|
|
| B.1.1.70 |
669 |
7 |
4.898144 |
-5.101856 |
18.203713 |
6.945512e-07 |
|
* |
|
| XBB.1.5.14 |
241 |
6 |
4.354619 |
-2.070485 |
12.140970 |
1.437529e-05 |
* |
* |
|
| MC.24 |
831 |
6 |
4.217147 |
4.217147 |
-0.434294 |
7.711828e-03 |
* |
* |
|
| BA.5.9 |
2618 |
6 |
4.166044 |
4.166044 |
-0.332088 |
7.335718e-03 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
315.853318 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
311.671369 |
308.339398 |
-272.678795 |
1.733548e-02 |
* |
* |
|
| XFG.2 |
500 |
9 |
300.299960 |
295.867638 |
-247.735275 |
6.657079e-08 |
|
* |
|
| XFG.3.1 |
87 |
18 |
293.143640 |
289.059389 |
-234.118778 |
7.340713e-11 |
|
|
|
| XFG.1 |
14 |
18 |
277.431167 |
271.756651 |
-199.513302 |
2.240125e-18 |
|
|
|
| LF.7.1 |
165 |
18 |
239.522535 |
219.125767 |
-94.251533 |
3.114251e-41 |
|
|
|
| LF.7.7.1 |
188 |
18 |
235.786977 |
211.782230 |
-79.564460 |
2.011225e-44 |
|
|
|
| LF.7.6 |
15 |
18 |
222.805087 |
208.437928 |
-72.875856 |
7.127170e-46 |
|
|
|
| LF.7.1.2 |
26 |
18 |
220.437974 |
199.761489 |
-55.522978 |
1.211270e-49 |
|
|
|
| LF.7.3 |
54 |
18 |
219.568744 |
204.413895 |
-64.827790 |
1.273157e-47 |
|
|
|
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1784_G|A, 2790_C|T, 3037_C|T, 3095_T|C, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4354_G|A, 5239_C|T, 6183_A|G, 7777_C|T, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28372_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY12924/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: JN.11 + LF.7 | BC BR: 8-9 | BC BR coord: 2792 - 2793 |
| Direction L1: << | Initial region span: 1-4,13-155 | Gap history (edge excluded): 4-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.59e-229 | Rec. model vs L2: 4.10e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
4 |
8.712905 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1 |
1124 |
5 |
8.478730 |
-7.425220 |
36.850441 |
356824.734345 |
* |
* |
|
| KP.2.3.10 |
10 |
4 |
8.417788 |
-20.505004 |
63.010008 |
0.744532 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
-20.687326 |
63.374651 |
0.621885 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
-27.856950 |
77.713901 |
0.000478 |
* |
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
-29.331522 |
80.663045 |
0.000109 |
* |
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
-28.758527 |
79.517053 |
0.000194 |
* |
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
-21.645099 |
65.290198 |
0.238115 |
* |
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
-21.668155 |
65.336310 |
0.232236 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
-21.760470 |
65.520940 |
0.212248 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
13 |
296.767482 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
13 |
284.946380 |
282.104480 |
-226.208959 |
7.138556e-06 |
|
* |
|
| XFG.2 |
500 |
13 |
280.776755 |
278.012828 |
-218.025655 |
1.194940e-07 |
|
* |
|
| XFG.3.1 |
87 |
13 |
251.484913 |
248.563151 |
-159.126302 |
1.938088e-20 |
|
* |
|
| XFG.1 |
14 |
13 |
235.397068 |
232.637149 |
-127.274299 |
2.339173e-27 |
|
* |
|
| LF.7.1 |
165 |
15 |
201.503267 |
189.801576 |
-41.603152 |
5.835233e-46 |
|
|
|
| LF.7.1.8 |
44 |
15 |
194.724215 |
183.040874 |
-28.081747 |
6.764373e-49 |
|
|
|
| LF.7.7.1 |
188 |
15 |
192.783973 |
172.264460 |
-6.528919 |
1.414831e-53 |
|
|
|
| LF.7.6 |
15 |
15 |
179.530316 |
167.846974 |
2.306052 |
1.702640e-55 |
|
|
|
| LF.7.3 |
54 |
15 |
176.188613 |
164.429420 |
9.141160 |
5.597669e-57 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 1238_C|T, 1844_A|C, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3569_A|G, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27630_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29422_G|A, 29510_A|C, 29682_29683, 29693_T|C,
29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13064/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: KP.3.1.1 + XFG.3 | BC BR: 11-12 | BC BR coord: 3773 - 3774 |
| Direction L1: << | Initial region span: 1-10,12-155 | Gap history (edge excluded): 10-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.76e-05 | |
| Rec. model vs L1: 9.76e-129 | Rec. model vs L2: 1.27e-14 | |
| Flags: Model_1BP_Best | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
10 |
14.815722 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
10 |
13.427482 |
10.757828 |
12.484345 |
4.349975e-02 |
* |
* |
|
| JN.1.65 |
124 |
10 |
10.554287 |
0.554287 |
32.891426 |
1.608835e-06 |
|
* |
|
| JN.1.11.1 |
226 |
5 |
10.475037 |
-1.239016 |
36.478032 |
2.672717e-07 |
|
|
|
| KP.1.1 |
593 |
5 |
9.615892 |
-2.097506 |
38.195012 |
1.130993e-07 |
|
|
|
| MC.42 |
84 |
10 |
8.930710 |
-1.069290 |
36.138581 |
3.167985e-07 |
|
* |
|
| LP.8.1.1 |
2345 |
5 |
8.231787 |
1.476211 |
31.047579 |
4.037035e-06 |
|
|
|
| XEC.35.1 |
28 |
4 |
7.305296 |
-20.777145 |
75.554290 |
8.770216e-16 |
|
|
|
| LF.7.1.11 |
20 |
4 |
7.236303 |
-27.355280 |
88.710561 |
1.217174e-18 |
|
|
|
| NC.1.2.1 |
10 |
4 |
7.236303 |
-31.841643 |
97.683285 |
1.372593e-20 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
12 |
273.648542 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.1 |
14 |
12 |
262.294685 |
262.294685 |
-188.589370 |
1.171079e-05 |
* |
* |
|
| LF.7 |
58 |
12 |
257.422181 |
257.422181 |
-178.844361 |
8.941298e-08 |
|
* |
|
| XFG.2 |
500 |
12 |
246.001670 |
246.001670 |
-156.003341 |
9.812001e-13 |
|
* |
|
| XFG.3.1 |
87 |
12 |
238.901493 |
238.901493 |
-141.802986 |
8.095930e-16 |
|
* |
|
| LF.7.7.1 |
188 |
14 |
193.553426 |
175.799165 |
-15.598331 |
3.193633e-43 |
|
|
|
| LF.7.1 |
165 |
14 |
189.433786 |
180.510363 |
-25.020726 |
3.546598e-41 |
|
|
|
| LF.7.1.2 |
26 |
14 |
172.884180 |
163.960757 |
8.078487 |
2.302705e-48 |
|
|
|
| LF.7.6 |
15 |
14 |
166.564688 |
157.641265 |
20.717470 |
4.144739e-51 |
|
|
|
| LF.7.3 |
54 |
14 |
163.328345 |
154.386230 |
27.227540 |
1.599074e-52 |
|
|
|
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1169_T|C, 2344_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3773_C|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16224_T|C, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20134_G|T, 20320_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22595_A|T, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23371_T|C, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29200_C|T, 29409_C|T, 29510_A|C,
29651_G|T, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13080/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: XFG.3 + XBB.1.16.22 + XFG.3 | BC BR: 4-5, 8-9 | BC BR coord: 896 - 897, 3176 - 3177 |
| Direction L1: << | Initial region span: 1-4,5-8,9-155 | Gap history (edge excluded): 4-9 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.02e-10 | |
| Rec. model vs L1: 3.56e-15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
4 |
4.53194 |
None |
None |
None |
* |
* |
* |
| |||||
XBB.1.16.22 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XBB.1.16.22 |
25 |
8 |
8.182764 |
NaN |
NaN |
NaN |
* |
* |
* |
| GN.1.1 |
93 |
8 |
7.347076 |
7.347076 |
-4.694153 |
4.317105e-01 |
* |
* |
|
| AY.73 |
462 |
5 |
5.908262 |
-14.087852 |
38.175704 |
2.118802e-10 |
|
|
|
| AY.71 |
260 |
5 |
5.908262 |
-0.407936 |
10.815872 |
1.850286e-04 |
* |
|
|
| AY.72 |
300 |
5 |
5.908262 |
-14.087852 |
38.175704 |
2.118802e-10 |
|
|
|
| B.1.1.181 |
17 |
5 |
5.908262 |
-14.087852 |
38.175704 |
2.118802e-10 |
|
|
|
| AY.2 |
1597 |
5 |
5.907009 |
-21.536087 |
53.072174 |
1.238135e-13 |
|
|
|
| AY.38 |
560 |
5 |
5.897490 |
-14.098624 |
38.197248 |
2.097720e-10 |
|
|
|
| AY.74 |
544 |
5 |
5.897171 |
-3.465409 |
16.930818 |
8.719052e-06 |
|
|
|
| AY.29.2 |
32 |
5 |
5.843723 |
-14.152391 |
38.304781 |
1.995413e-10 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
294.248491 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
285.286785 |
280.005604 |
-214.011208 |
7.016509e-09 |
|
* |
|
| XFG.2 |
500 |
9 |
281.759859 |
276.448478 |
-206.896956 |
2.005415e-10 |
|
* |
|
| XFG.3.1 |
87 |
9 |
253.041948 |
247.760767 |
-149.521534 |
6.954974e-23 |
|
* |
|
| XFG.1 |
14 |
9 |
236.109583 |
230.828403 |
-115.656805 |
3.088090e-30 |
|
* |
|
| LF.7.1 |
165 |
15 |
204.215007 |
199.856741 |
-53.713482 |
1.089980e-43 |
|
|
|
| LF.7.7.1 |
188 |
15 |
195.542400 |
181.508428 |
-17.016856 |
1.175672e-51 |
|
|
|
| LF.7.1.8 |
44 |
15 |
183.653934 |
167.686297 |
10.627406 |
1.164568e-57 |
|
|
|
| LF.7.6 |
15 |
15 |
182.560510 |
166.662382 |
12.675236 |
4.178429e-58 |
|
|
|
| LF.7.3 |
54 |
15 |
179.324167 |
163.331496 |
19.337008 |
1.495590e-59 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2509_C|T, 2790_C|T, 3037_C|T, 3176_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5184_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16329_C|T, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 18981_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 20679_G|T,
21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G,
22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22525_A|G, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13088/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: BA.2.76 + XFG.3 | BC BR: 4-5 | BC BR coord: 672 - 673 |
| Direction L1: << | Initial region span: 1-4,7-155 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 2.63e-13 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BA.2.76 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BA.2.76 |
427 |
4 |
4.529835 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
5 |
3.256950 |
-0.356743 |
8.713486 |
0.007559 |
* |
* |
|
| BF.14 |
1581 |
4 |
3.190337 |
3.190337 |
1.619326 |
0.261846 |
* |
* |
|
| KP.2.3 |
4440 |
6 |
2.973530 |
-0.854327 |
9.708655 |
0.004585 |
* |
|
|
| BQ.1.1.10 |
705 |
4 |
2.831446 |
2.831446 |
2.337108 |
0.182684 |
* |
* |
|
| LP.8.1.1 |
2345 |
5 |
2.630623 |
-0.968622 |
9.937244 |
0.004087 |
* |
* |
|
| B.1.349 |
537 |
3 |
1.593554 |
-8.406446 |
24.812891 |
0.000002 |
|
* |
|
| B.1.1.7 |
477665 |
3 |
1.434268 |
-8.565732 |
25.131465 |
0.000002 |
|
* |
|
| BE.1.1.2 |
2143 |
4 |
1.170904 |
1.170904 |
5.658191 |
0.034735 |
* |
* |
|
| BA.5 |
6418 |
4 |
0.522220 |
0.522220 |
6.955560 |
0.018133 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
276.923940 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
7 |
272.735071 |
266.362426 |
-180.724851 |
1.529851e-02 |
* |
* |
|
| XFG.2 |
500 |
7 |
261.371004 |
257.283167 |
-162.566334 |
1.751567e-06 |
|
* |
|
| XFG.3.1 |
87 |
7 |
254.123042 |
247.750397 |
-143.500793 |
1.265986e-10 |
|
* |
|
| XFG.1 |
14 |
7 |
237.190678 |
230.818032 |
-109.636065 |
5.621124e-18 |
|
* |
|
| LF.7.7.1 |
188 |
15 |
195.542400 |
170.754452 |
10.491096 |
4.612380e-44 |
|
|
|
| LF.7.1 |
165 |
15 |
193.591003 |
188.598160 |
-25.196321 |
2.593643e-36 |
|
|
|
| LF.7.6 |
15 |
15 |
182.560510 |
166.652011 |
18.695977 |
7.605824e-46 |
|
|
|
| LF.7.3 |
54 |
15 |
179.324167 |
163.339818 |
25.320364 |
2.777356e-47 |
|
|
|
| LF.7.1.2 |
26 |
15 |
174.512558 |
158.486398 |
35.027204 |
2.163375e-49 |
|
|
|
|
Target sequence
, 174_G|T, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16173_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20235_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28473_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29367_C|T, 29409_C|T,
29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13108/2025
| Target: 530 samples | Number of changes: 156 | |
| BC: KP.2 + XFG.3 | BC BR: 11-12 | BC BR coord: 4188 - 4189 |
| Direction L1: << | Initial region span: 1-11,18-156 | Gap history (edge excluded): 11-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.83e-111 | Rec. model vs L2: 6.48e-19 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2 |
1589 |
11 |
19.833322 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3 |
4440 |
11 |
14.388256 |
14.388256 |
-0.776512 |
4.317840e-03 |
* |
* |
|
| MC.1 |
932 |
9 |
14.268497 |
5.345074 |
17.309852 |
5.094164e-07 |
|
|
|
| KP.3.1.4 |
511 |
9 |
14.077741 |
5.154318 |
17.691364 |
4.212666e-07 |
|
|
|
| KP.3.1.1 |
12013 |
9 |
12.914215 |
3.990376 |
20.019249 |
1.314026e-07 |
|
|
|
| JN.1 |
17255 |
11 |
12.855362 |
12.855362 |
2.289275 |
9.303032e-04 |
* |
* |
|
| KP.2.2 |
1334 |
9 |
12.162400 |
3.238977 |
21.522046 |
6.207019e-08 |
|
|
|
| JN.1.7 |
1974 |
9 |
11.375845 |
2.451915 |
23.096170 |
2.817023e-08 |
|
|
|
| JN.1.4.5 |
1757 |
9 |
9.356603 |
0.433180 |
27.133640 |
3.755667e-09 |
|
|
|
| LD.1 |
70 |
4 |
9.085704 |
-20.263175 |
68.526350 |
3.844070e-18 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
18 |
244.192233 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
18 |
242.885348 |
239.565012 |
-145.130025 |
3.456202e-02 |
* |
* |
|
| XFG.2 |
500 |
18 |
234.896342 |
228.240279 |
-122.480558 |
4.170749e-07 |
|
* |
|
| XFG.3.1 |
87 |
18 |
228.660957 |
220.408336 |
-106.816672 |
1.658396e-10 |
|
* |
|
| XFG.1 |
14 |
18 |
213.954846 |
204.320491 |
-74.640982 |
1.705651e-17 |
|
* |
|
| LF.7.1 |
165 |
18 |
175.740514 |
150.879263 |
32.241474 |
1.054855e-40 |
|
* |
|
| LF.7.7.1 |
188 |
18 |
171.963602 |
152.783973 |
28.432055 |
7.088004e-40 |
|
* |
|
| LF.7.1.8 |
44 |
18 |
167.680110 |
142.778456 |
48.443088 |
3.201899e-44 |
|
* |
|
| LF.7.6 |
15 |
18 |
158.704612 |
139.530316 |
54.939368 |
1.241511e-45 |
|
* |
|
| LF.7.1.2 |
26 |
18 |
157.580693 |
132.725558 |
68.548884 |
1.375868e-48 |
|
* |
|
|
Target sequence
, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3951_3953, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 6268_C|T, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16173_C|T, 16600_T|C, 17410_C|T, 18048_T|C, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22082_C|T, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28473_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29367_C|T, 29409_C|T,
29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13110/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: BA.2.76 + XFG.3 | BC BR: 4-5 | BC BR coord: 672 - 673 |
| Direction L1: << | Initial region span: 1-4,7-155 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 2.63e-13 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BA.2.76 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BA.2.76 |
427 |
4 |
4.529835 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
5 |
3.256950 |
-0.356743 |
8.713486 |
0.007559 |
* |
* |
|
| BF.14 |
1581 |
4 |
3.190337 |
3.190337 |
1.619326 |
0.261846 |
* |
* |
|
| KP.2.3 |
4440 |
6 |
2.973530 |
-0.854327 |
9.708655 |
0.004585 |
* |
|
|
| BQ.1.1.10 |
705 |
4 |
2.831446 |
2.831446 |
2.337108 |
0.182684 |
* |
* |
|
| LP.8.1.1 |
2345 |
5 |
2.630623 |
-0.968622 |
9.937244 |
0.004087 |
* |
* |
|
| B.1.349 |
537 |
3 |
1.593554 |
-8.406446 |
24.812891 |
0.000002 |
|
* |
|
| B.1.1.7 |
477665 |
3 |
1.434268 |
-8.565732 |
25.131465 |
0.000002 |
|
* |
|
| BE.1.1.2 |
2143 |
4 |
1.170904 |
1.170904 |
5.658191 |
0.034735 |
* |
* |
|
| BA.5 |
6418 |
4 |
0.522220 |
0.522220 |
6.955560 |
0.018133 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
262.228759 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
7 |
258.888377 |
252.515732 |
-155.031463 |
3.579311e-02 |
* |
* |
|
| XFG.2 |
500 |
7 |
247.620087 |
243.532250 |
-137.064500 |
4.483978e-06 |
|
* |
|
| XFG.3.1 |
87 |
7 |
239.640359 |
233.267714 |
-116.535427 |
1.569647e-10 |
|
* |
|
| XFG.1 |
14 |
7 |
223.714357 |
217.341712 |
-84.683424 |
1.894484e-17 |
|
* |
|
| LF.7.7.1 |
188 |
15 |
181.719025 |
156.931077 |
36.137845 |
1.100934e-43 |
|
|
|
| LF.7.1 |
165 |
15 |
179.808982 |
174.816139 |
0.367721 |
6.443445e-36 |
|
|
|
| LF.7.1.8 |
44 |
15 |
171.708175 |
155.753157 |
38.493687 |
3.399893e-44 |
|
|
|
| LF.7.6 |
15 |
15 |
168.460035 |
152.551537 |
44.896926 |
1.378959e-45 |
|
|
|
| LF.7.3 |
54 |
15 |
165.118331 |
149.133983 |
51.732035 |
4.533523e-47 |
|
|
|
|
Target sequence
, 174_G|T, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10450_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16173_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20235_C|T, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28473_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29367_C|T, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13111/2025
| Target: 530 samples | Number of changes: 157 | |
| BC: KP.3.1 + XFG.2 | BC BR: 11-12 | BC BR coord: 4188 - 4189 |
| Direction L1: << | Initial region span: 1-11,15-157 | Gap history (edge excluded): 11-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.41e-118 | Rec. model vs L2: 4.68e-21 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.3.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1 |
1957 |
11 |
15.749998 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.2 |
1334 |
11 |
15.576007 |
15.576007 |
-7.152014 |
8.394570e-01 |
* |
* |
|
| LF.7.7.1 |
188 |
9 |
15.101403 |
-2.652858 |
29.305717 |
1.015804e-08 |
|
|
|
| LB.1.3.1 |
292 |
9 |
14.642740 |
5.715886 |
12.568227 |
4.383842e-05 |
* |
|
|
| XEC.2 |
921 |
11 |
14.555106 |
14.555106 |
-5.110211 |
3.027040e-01 |
* |
* |
|
| KP.3.1.1 |
12013 |
11 |
14.550812 |
14.550812 |
-5.101624 |
3.011942e-01 |
* |
* |
|
| JN.1.11.1 |
226 |
9 |
13.983183 |
5.059760 |
13.880480 |
2.277152e-05 |
* |
|
|
| XFG.3 |
480 |
12 |
13.775049 |
5.834013 |
12.331975 |
4.942768e-05 |
* |
* |
|
| MC.24 |
831 |
9 |
13.219225 |
4.295802 |
15.408395 |
1.059636e-05 |
* |
|
|
| JN.1 |
17255 |
11 |
13.142408 |
13.142408 |
-2.284817 |
7.353454e-02 |
* |
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
15 |
275.120321 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
15 |
271.173162 |
257.027123 |
-180.054246 |
2.322758e-03 |
* |
* |
|
| XFG.3 |
480 |
15 |
270.626033 |
258.567070 |
-183.134140 |
1.083471e-02 |
* |
* |
|
| XFG.3.1 |
87 |
15 |
236.922525 |
224.891019 |
-115.782037 |
2.570105e-17 |
|
* |
|
| XFG.1 |
14 |
15 |
233.734736 |
221.703229 |
-109.406459 |
1.063464e-18 |
|
* |
|
| LF.7.1 |
165 |
23 |
196.959492 |
165.285288 |
3.429425 |
3.340629e-43 |
|
|
|
| LF.7.7.1 |
188 |
15 |
186.607347 |
156.607347 |
20.785305 |
5.677434e-47 |
|
* |
|
| LF.7.1.8 |
44 |
23 |
176.438824 |
144.724215 |
44.551569 |
3.933088e-52 |
|
|
|
| LF.7.6 |
15 |
15 |
173.630791 |
143.630791 |
46.738419 |
1.315774e-52 |
|
* |
|
| LF.7.3 |
54 |
15 |
170.394448 |
140.394448 |
53.211105 |
5.178912e-54 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3717_C|T, 4184_G|A, 4214_T|C, 4222_A|G, 4255_G|A, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T,
8293_C|T, 8326_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 13620_C|A, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 18981_C|T, 19955_C|T, 20055_A|G, 20178_C|T,
21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G,
22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A,
22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26196_G|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27765_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C,
28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13137/2025
| Target: 530 samples | Number of changes: 158 | |
| BC: LD.1 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,21-158 | Gap history (edge excluded): 4-21 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.19e-197 | Rec. model vs L2: 1.33e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LD.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LD.1 |
70 |
4 |
9.085704 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2 |
1589 |
7 |
8.894691 |
6.243829 |
-4.487657 |
0.058426 |
* |
|
|
| XEC.29 |
135 |
4 |
8.457912 |
8.457912 |
-8.915824 |
0.535261 |
* |
* |
|
| BA.5.1.17 |
357 |
3 |
8.456578 |
-1.543422 |
11.086845 |
0.000024 |
* |
* |
|
| JN.1.29 |
69 |
4 |
7.971640 |
7.971640 |
-7.943281 |
0.327915 |
* |
* |
|
| MC.8 |
93 |
4 |
7.731975 |
7.731975 |
-7.463950 |
0.257947 |
* |
* |
|
| XEC.39 |
155 |
4 |
7.208205 |
7.208205 |
-6.416409 |
0.153355 |
* |
* |
|
| MC.1 |
932 |
7 |
7.060566 |
6.073660 |
-4.147321 |
0.049292 |
* |
|
|
| KP.3.1.4 |
511 |
7 |
6.889559 |
5.992689 |
-3.985378 |
0.045502 |
* |
|
|
| MC.9 |
298 |
4 |
6.547233 |
6.547233 |
-5.094467 |
0.078866 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
21 |
254.192233 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
21 |
252.885348 |
208.888377 |
-61.776754 |
3.543696e-02 |
* |
* |
|
| XFG.2 |
500 |
21 |
244.896342 |
199.918994 |
-43.837988 |
4.506454e-06 |
|
* |
|
| XFG.3.1 |
87 |
21 |
238.660957 |
189.640359 |
-23.280718 |
1.546278e-10 |
|
* |
|
| XFG.1 |
14 |
21 |
223.954846 |
173.714357 |
8.571285 |
1.875634e-17 |
|
* |
|
| LF.7.1 |
165 |
21 |
185.740514 |
131.200980 |
93.598040 |
6.443445e-36 |
|
* |
|
| LF.7.7.1 |
188 |
21 |
181.963602 |
113.341668 |
129.316665 |
1.128804e-43 |
|
* |
|
| LF.7.1.8 |
44 |
21 |
177.680110 |
112.172322 |
131.655356 |
3.503436e-44 |
|
* |
|
| LF.7.6 |
15 |
21 |
168.704612 |
108.924182 |
138.151636 |
1.365239e-45 |
|
* |
|
| LF.7.1.2 |
26 |
21 |
167.580693 |
102.040983 |
151.918034 |
1.396661e-48 |
|
* |
|
|
Target sequence
, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3326_C|A, 3431_G|T, 3565_T|C, 3917_A|G, 3951_3953, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 6268_C|T,
6741_G|A, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T,
12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16173_C|T, 16600_T|C, 17410_C|T, 18048_T|C, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28473_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29367_C|T,
29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/CA-LACPHL-AY13158/2025
| Target: 530 samples | Number of changes: 154 | |
| BC: JN.11 + XFG.2 | BC BR: 4-5 | BC BR coord: 2067 - 2068 |
| Direction L1: << | Initial region span: 1-4,5-154 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.04e-238 | Rec. model vs L2: 8.32e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
4 |
8.712905 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
4 |
8.417788 |
8.417788 |
-2.835576 |
0.744532 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
8.235466 |
-2.470933 |
0.618783 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
1.065842 |
11.868317 |
0.000476 |
* |
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
-0.408730 |
14.817461 |
0.000109 |
* |
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
0.164265 |
13.671469 |
0.000194 |
* |
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
7.277693 |
-0.555386 |
0.238115 |
* |
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
7.254637 |
-0.509274 |
0.232236 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
7.162322 |
-0.324644 |
0.211189 |
* |
* |
|
| LP.8.1.10 |
32 |
4 |
7.156197 |
0.546188 |
12.907624 |
0.000283 |
* |
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
5 |
294.433454 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
6 |
287.866398 |
277.866398 |
-211.732796 |
6.364150e-08 |
|
* |
|
| LF.7 |
58 |
6 |
286.350487 |
276.350487 |
-208.700975 |
1.398892e-08 |
|
* |
|
| XFG.3.1 |
87 |
6 |
267.087493 |
257.087493 |
-170.174985 |
6.013137e-17 |
|
* |
|
| XFG.1 |
14 |
6 |
237.190678 |
227.190678 |
-110.381355 |
6.249821e-30 |
|
* |
|
| LF.7.1 |
165 |
12 |
195.285288 |
184.660805 |
-25.321609 |
2.115063e-48 |
|
|
|
| LF.7.7.1 |
188 |
12 |
186.607347 |
178.530009 |
-13.060018 |
4.603605e-51 |
|
|
|
| LF.7.3 |
54 |
12 |
183.675368 |
172.993384 |
-1.986767 |
1.816679e-53 |
|
|
|
| LF.7.1.8 |
44 |
12 |
174.724215 |
164.118082 |
15.763837 |
2.540473e-57 |
|
|
|
| LF.7.6 |
15 |
12 |
173.630791 |
163.024657 |
17.950687 |
8.498889e-58 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10570_T|C, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
13378_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 18981_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21127_A|G, 21607_.|GNNNNNNNNNNN,
21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28695_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): USA/CT-DPH-1292714001/2025
| Target: 530 samples | Number of changes: 150 | |
| BC: LF.7 + BE.5 | BC BR: 147-148 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-142,148-150 | Gap history (edge excluded): 142-148 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.88e-07 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
142 |
309.587062 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
148 |
308.417909 |
302.391709 |
-270.783418 |
8.543495e-02 |
* |
|
|
| XFG.2 |
500 |
142 |
300.663746 |
295.926543 |
-257.853086 |
1.330215e-04 |
* |
* |
|
| XFG.3.1 |
87 |
148 |
275.208799 |
269.182598 |
-204.365197 |
3.242555e-16 |
|
|
|
| XFG.1 |
14 |
148 |
259.534111 |
253.507911 |
-173.015822 |
5.050348e-23 |
|
|
|
| LF.7.1.8 |
44 |
142 |
224.571938 |
219.834735 |
-105.669470 |
1.197994e-37 |
|
* |
|
| LF.7.1 |
165 |
142 |
219.939926 |
215.184485 |
-96.368970 |
1.145474e-39 |
|
* |
|
| LF.7.6 |
15 |
142 |
216.244100 |
211.506897 |
-89.013794 |
2.889226e-41 |
|
* |
|
| LF.7.7.1 |
188 |
142 |
214.706097 |
209.968894 |
-85.937788 |
6.225003e-42 |
|
* |
|
| LF.7.3 |
54 |
142 |
206.001218 |
201.264015 |
-68.528030 |
1.031825e-45 |
|
* |
|
| |||||
BE.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BE.5 |
231 |
148 |
7.835908 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.13.1 |
751 |
144 |
7.032025 |
1.769229 |
4.461543 |
0.002323 |
* |
|
|
| KP.1.1.3 |
979 |
144 |
6.892653 |
1.632922 |
4.734156 |
0.002029 |
* |
|
|
| JN.1.2 |
650 |
144 |
6.563489 |
1.305311 |
5.389378 |
0.001459 |
* |
|
|
| LB.1.3 |
778 |
144 |
6.281969 |
1.023032 |
5.953935 |
0.001103 |
* |
|
|
| LP.8.1.1 |
2345 |
144 |
4.777156 |
-0.485641 |
8.971282 |
0.000244 |
* |
|
|
| JN.1 |
17255 |
144 |
4.055319 |
-1.206550 |
10.413101 |
0.000119 |
* |
|
|
| KP.3.1.1 |
12013 |
144 |
3.973361 |
-1.289186 |
10.578372 |
0.000109 |
* |
|
|
| JN.1.4 |
8971 |
144 |
3.963317 |
-1.296691 |
10.593382 |
0.000108 |
* |
|
|
| XFG.3.1 |
87 |
144 |
2.365293 |
-2.897503 |
13.795007 |
0.000022 |
* |
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12238_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 20270_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 25605_A|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28467_A|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29482_C|T, 29510_A|C
Case 58 (XFG): USA/CT-DPH-1302633001/2025
| Target: 530 samples | Number of changes: 154 | |
| BC: KP.3.1.1 + LF.7 | BC BR: 12-13 | BC BR coord: 4068 - 4069 |
| Direction L1: << | Initial region span: 1-10,13-154 | Gap history (edge excluded): 10-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.39e-135 | Rec. model vs L2: 2.90e-27 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
10 |
13.891039 |
NaN |
NaN |
NaN |
* |
* |
* |
| KS.1.1.2 |
252 |
5 |
9.308002 |
-12.386685 |
54.773370 |
1.621637e-11 |
|
|
|
| LB.1.3.1 |
292 |
5 |
7.915789 |
-13.784194 |
57.568387 |
3.998907e-12 |
|
|
|
| KP.1.1.1 |
578 |
5 |
7.234155 |
-14.492697 |
58.985394 |
1.966040e-12 |
|
|
|
| BA.2.86.1 |
1343 |
5 |
7.187877 |
-16.878703 |
63.757406 |
1.810506e-13 |
|
|
|
| MC.11.2 |
146 |
3 |
6.967997 |
-21.114995 |
72.229989 |
2.621578e-15 |
|
|
|
| BA.2.47 |
679 |
3 |
6.006357 |
-58.208586 |
146.417172 |
2.034272e-31 |
|
|
|
| BN.1.5 |
1025 |
4 |
5.606905 |
-63.827622 |
157.655244 |
7.373505e-34 |
|
|
|
| MU.2.1.1 |
10 |
3 |
5.379225 |
-22.676131 |
75.352263 |
5.508881e-16 |
|
|
|
| MC.17 |
46 |
3 |
5.239463 |
-22.815893 |
75.631787 |
4.789191e-16 |
|
|
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
13 |
308.827859 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
12 |
306.418196 |
303.455925 |
-278.911850 |
4.630919e-03 |
* |
* |
|
| XFG.3 |
480 |
13 |
295.388436 |
295.388436 |
-262.776873 |
1.455734e-06 |
|
* |
|
| XFG.3.1 |
87 |
13 |
263.410830 |
263.410830 |
-198.821659 |
1.880809e-20 |
|
* |
|
| XFG.1 |
14 |
13 |
246.254438 |
246.254438 |
-164.508877 |
6.668418e-28 |
|
* |
|
| LF.7.1.8 |
44 |
24 |
231.469563 |
210.831531 |
-93.663062 |
2.748785e-43 |
|
|
|
| LF.7.1 |
165 |
24 |
224.240243 |
203.642615 |
-79.285231 |
2.083219e-46 |
|
|
|
| LF.7.7.1 |
188 |
38 |
219.628151 |
200.063133 |
-72.126265 |
5.807118e-48 |
|
|
|
| LF.7.6 |
15 |
15 |
204.686595 |
195.763172 |
-63.526344 |
7.879423e-50 |
|
|
|
| LF.7.1.2 |
26 |
24 |
195.403566 |
174.812055 |
-21.624110 |
6.249619e-59 |
|
|
|
|
Target sequence
, 186_C|T, 241_C|T, 670_T|G, 813_C|T, 897_C|A, 1177_T|C, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4002_C|T, 4068_C|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6543_C|T, 7842_A|G,
7869_C|T, 8152_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12676_C|T,
12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T,
21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G,
22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A,
22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T,
29510_A|C
Case 58 (XFG): USA/CT-DPH-1304113001/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: XEC.29 + XFG.3 | BC BR: 5-6 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-5,9-152 | Gap history (edge excluded): 5-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.99e-220 | Rec. model vs L2: 3.46e-14 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.29 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.29 |
135 |
5 |
10.664726 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.9 |
298 |
5 |
7.269081 |
7.269081 |
-4.538162 |
3.354055e-02 |
* |
* |
|
| KP.2 |
1589 |
5 |
7.083669 |
7.083669 |
-4.167338 |
2.787570e-02 |
* |
* |
|
| KP.3.1.4 |
511 |
5 |
6.175261 |
6.175261 |
-2.350521 |
1.122064e-02 |
* |
* |
|
| MC.1 |
932 |
5 |
5.655268 |
5.655268 |
-1.310537 |
6.670903e-03 |
* |
* |
|
| KP.2.2 |
1334 |
5 |
4.924695 |
4.924695 |
0.150609 |
3.214768e-03 |
* |
* |
|
| JN.1.39 |
1007 |
5 |
4.819029 |
4.819029 |
0.361941 |
2.894335e-03 |
* |
* |
|
| LB.1 |
1128 |
5 |
4.587727 |
4.587727 |
0.824545 |
2.299646e-03 |
* |
* |
|
| BF.14 |
1581 |
4 |
4.370988 |
-5.629012 |
21.258023 |
8.378599e-08 |
|
* |
|
| KP.3.1.1 |
12013 |
6 |
4.091904 |
3.744455 |
2.511091 |
9.878299e-04 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
323.955272 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
309.956453 |
279.956453 |
-215.912907 |
8.315287e-07 |
|
* |
|
| XFG.2 |
500 |
8 |
298.714244 |
281.013151 |
-218.026302 |
2.400100e-06 |
|
* |
|
| XFG.3.1 |
87 |
9 |
291.566276 |
261.566276 |
-179.132551 |
8.574360e-15 |
|
* |
|
| XFG.1 |
14 |
9 |
274.571728 |
244.571728 |
-145.143455 |
3.567525e-22 |
|
* |
|
| LF.7.7.1 |
188 |
17 |
237.921608 |
189.544250 |
-35.088501 |
4.521819e-46 |
|
|
|
| LF.7.1 |
165 |
17 |
230.871754 |
202.263752 |
-60.527503 |
1.511955e-40 |
|
|
|
| LF.7.1.8 |
44 |
17 |
222.705226 |
183.169373 |
-22.338746 |
7.703460e-49 |
|
|
|
| LF.7.6 |
15 |
17 |
219.416831 |
179.880978 |
-15.761956 |
2.869835e-50 |
|
|
|
| LF.7.3 |
54 |
17 |
215.969767 |
176.358064 |
-8.716127 |
8.494550e-52 |
|
|
|
|
Target sequence
, 66_C|T, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1213_C|T, 1288_C|T, 2086_G|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G,
7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25606_G|A, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): USA/CT-USAFSAM-S23777/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: JN.11 + XFG.2 | BC BR: 4-5 | BC BR coord: 2067 - 2068 |
| Direction L1: << | Initial region span: 1-4,6-152 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.03e-229 | Rec. model vs L2: 8.32e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
4 |
8.712905 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
4 |
8.417788 |
8.417788 |
-2.835576 |
0.744532 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
8.235466 |
-2.470933 |
0.618783 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
1.065842 |
11.868317 |
0.000476 |
* |
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
-0.408730 |
14.817461 |
0.000109 |
* |
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
0.164265 |
13.671469 |
0.000194 |
* |
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
7.277693 |
-0.555386 |
0.238115 |
* |
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
7.254637 |
-0.509274 |
0.232236 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
7.162322 |
-0.324644 |
0.211189 |
* |
* |
|
| LP.8.1.10 |
32 |
4 |
7.156197 |
0.546188 |
12.907624 |
0.000283 |
* |
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
6 |
309.396975 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
7 |
303.171216 |
283.171216 |
-226.342433 |
1.828390e-11 |
|
* |
|
| LF.7 |
58 |
7 |
302.503793 |
282.503793 |
-225.007587 |
9.402928e-12 |
|
* |
|
| XFG.3.1 |
87 |
7 |
269.640359 |
249.640359 |
-159.280718 |
5.013892e-26 |
|
* |
|
| XFG.1 |
14 |
7 |
253.714357 |
233.714357 |
-127.428715 |
6.081845e-33 |
|
* |
|
| LF.7.7.1 |
188 |
13 |
213.692328 |
205.090802 |
-70.181604 |
2.250898e-45 |
|
|
|
| LF.7.1 |
165 |
13 |
211.503267 |
190.878784 |
-41.757568 |
1.517159e-51 |
|
|
|
| LF.7.1.8 |
44 |
13 |
204.724215 |
184.118082 |
-28.236163 |
1.758735e-54 |
|
|
|
| LF.7.1.2 |
26 |
13 |
195.612259 |
174.927683 |
-9.855367 |
1.794875e-58 |
|
|
|
| LF.7.6 |
15 |
13 |
189.530316 |
168.924182 |
2.151636 |
4.426861e-61 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2334_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21846_C|A, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23592_A|C, 23599_T|G, 23604_C|G, 23635_C|T, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MA-MASPHL-14177/2025
| Target: 530 samples | Number of changes: 156 | |
| BC: XFG.3 + KP.3.1.5 + XFG.3 | BC BR: 5-6, 9-10 | BC BR coord: 896 - 897, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-5,7-9,10-156 | Gap history (edge excluded): 5-10 -> 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.86e-02 | |
| Rec. model vs L1: 5.55e-09 | Rec. model vs L2: 1.44e-217 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
5 |
9.640979 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
7 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
7 |
7.613984 |
-2.386016 |
22.772033 |
1.000000e+00 |
* |
* |
|
| NL.11 |
57 |
7 |
7.208518 |
-2.791482 |
23.582963 |
6.669768e-01 |
* |
* |
|
| XBB.4 |
49 |
6 |
6.609415 |
6.609415 |
4.781171 |
8.062670e+03 |
* |
* |
|
| B.1.1.304 |
143 |
8 |
6.536776 |
-19.539319 |
57.078638 |
3.545505e-08 |
|
* |
|
| AZ.5 |
21 |
8 |
6.536776 |
-23.368480 |
64.736960 |
7.697156e-10 |
|
* |
|
| B.1.1.434 |
1274 |
8 |
6.534418 |
-27.588067 |
73.176135 |
1.131378e-11 |
|
* |
|
| XBB.1.5.92 |
41 |
6 |
6.272764 |
6.272764 |
5.454472 |
5.767535e+03 |
* |
* |
|
| JE.1.1.1 |
46 |
7 |
5.577102 |
-11.675249 |
41.350497 |
9.234306e-05 |
* |
* |
|
| LE.1.2 |
19 |
7 |
5.362692 |
-12.680191 |
43.360383 |
3.380168e-05 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
10 |
279.842351 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
10 |
269.362742 |
279.250049 |
-204.500098 |
3.589186e-05 |
* |
* |
|
| XFG.2 |
500 |
10 |
251.669760 |
259.218842 |
-164.437684 |
7.179224e-14 |
|
* |
|
| XFG.3.1 |
87 |
10 |
239.813677 |
248.482412 |
-142.964825 |
1.555087e-18 |
|
* |
|
| XFG.1 |
14 |
10 |
218.661809 |
226.646956 |
-99.293912 |
5.116050e-28 |
|
* |
|
| LF.7.1 |
165 |
18 |
186.187225 |
188.465008 |
-22.930015 |
1.341441e-44 |
|
|
|
| LF.7.1.2 |
26 |
18 |
181.834837 |
183.570539 |
-13.141078 |
1.003922e-46 |
|
|
|
| LF.7.7.1 |
188 |
14 |
180.598486 |
177.956410 |
-1.912821 |
3.657097e-49 |
|
|
|
| LF.7.1.8 |
44 |
18 |
177.515938 |
178.161865 |
-2.323731 |
4.489178e-49 |
|
|
|
| LF.7.1.5 |
40 |
18 |
156.918808 |
157.072878 |
39.854244 |
3.126566e-58 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18129_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN,
21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MD-MDH-11764/2025
| Target: 530 samples | Number of changes: 146 | |
| BC: LF.1 + LF.7 | BC BR: 5-6 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-5,9-146 | Gap history (edge excluded): 5-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.10e-138 | Rec. model vs L2: 1.23e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.1 |
141 |
5 |
12.979047 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.6 |
366 |
5 |
11.261938 |
11.261938 |
-8.523876 |
1.790661e-01 |
* |
* |
|
| MC.10.1 |
650 |
5 |
9.038076 |
9.038076 |
-4.076152 |
1.944821e-02 |
* |
* |
|
| JN.1.4.4 |
32 |
4 |
8.345935 |
6.143533 |
1.712934 |
1.075467e-03 |
* |
* |
|
| BF.40 |
56 |
4 |
8.145755 |
-1.854245 |
17.708490 |
3.607791e-07 |
|
* |
|
| FL.5.1 |
10 |
4 |
6.948982 |
-3.051018 |
20.102037 |
1.092093e-07 |
|
* |
|
| BQ.1.1.41 |
818 |
4 |
6.470822 |
-3.529178 |
21.058357 |
6.757687e-08 |
|
* |
|
| GS.1 |
109 |
4 |
5.997751 |
-4.002249 |
22.004497 |
4.223570e-08 |
|
* |
|
| BE.1.2 |
467 |
4 |
5.878484 |
-4.121516 |
22.243032 |
3.745971e-08 |
|
* |
|
| BQ.1.1.4 |
2753 |
4 |
5.833933 |
-4.166067 |
22.332134 |
3.581138e-08 |
|
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
9 |
252.204253 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
9 |
242.615949 |
221.553098 |
-93.106196 |
6.806823e-05 |
* |
* |
|
| XFG.2 |
500 |
9 |
225.532594 |
196.930693 |
-43.861386 |
1.375444e-15 |
|
* |
|
| XFG.1 |
14 |
9 |
216.855594 |
195.782273 |
-41.564545 |
4.355161e-16 |
|
* |
|
| XFG.3.1 |
87 |
9 |
209.047999 |
187.974677 |
-25.949355 |
1.775562e-19 |
|
* |
|
| LF.7.1.8 |
44 |
17 |
188.979180 |
161.316976 |
27.366048 |
4.688618e-31 |
|
|
|
| LF.7.7.1 |
188 |
13 |
166.904493 |
135.307771 |
79.384457 |
2.383509e-42 |
|
|
|
| LF.7.1.2 |
26 |
17 |
165.871947 |
138.256263 |
73.487475 |
4.531209e-41 |
|
|
|
| LF.7.1.5 |
40 |
17 |
160.276110 |
132.660426 |
84.679149 |
1.683978e-43 |
|
|
|
| LF.7.1 |
165 |
17 |
158.101789 |
130.461639 |
89.076722 |
1.865901e-44 |
|
|
|
|
Target sequence
, 44_C|T, 241_C|T, 481_A|G, 670_T|G, 897_C|A, 2485_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23148_A|C, 23222_G|A, 23271_C|T,
23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T,
28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MI-UM-10064755202/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: XFG.3 + NY.15 + XFG.3 | BC BR: 134-135, 146-147 | BC BR coord: 26872 - 26873, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-134,136-146,147-153 | Gap history (edge excluded): 134-147 -> 134-136 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.26e-01 | |
| Rec. model vs L1: 3.43e-22 | Rec. model vs L2: 1.17e-180 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
134 |
287.998031 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
139 |
281.013438 |
284.704425 |
-247.408850 |
4.882614e-08 |
|
|
|
| XFG.2 |
500 |
134 |
264.611688 |
278.175804 |
-234.351608 |
7.123762e-11 |
|
* |
|
| XFG.3.1 |
87 |
134 |
238.035180 |
250.992096 |
-179.984191 |
1.112792e-22 |
|
* |
|
| XFG.1 |
14 |
134 |
222.185044 |
235.870198 |
-149.740397 |
3.019127e-29 |
|
* |
|
| LF.7.1.8 |
44 |
134 |
213.864314 |
211.349996 |
-100.699992 |
6.776114e-40 |
|
* |
|
| LF.7.7.1 |
188 |
134 |
188.199426 |
192.510309 |
-63.020618 |
4.455256e-48 |
|
* |
|
| LF.7.1 |
165 |
134 |
183.904396 |
193.083008 |
-64.166015 |
7.917571e-48 |
|
* |
|
| LF.7.6 |
15 |
134 |
180.184030 |
177.699883 |
-33.399766 |
1.648054e-54 |
|
* |
|
| LF.7.3 |
54 |
134 |
170.077623 |
167.698837 |
-13.397673 |
7.482152e-59 |
|
* |
|
| |||||
NY.15 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NY.15 |
216 |
136 |
15.911165 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.11 |
31 |
141 |
12.700518 |
-1.884552 |
27.769104 |
4.117888e-04 |
* |
|
|
| MD.1.1 |
24 |
141 |
12.312095 |
-2.272976 |
28.545951 |
2.788044e-04 |
* |
|
|
| LF.9 |
48 |
141 |
10.653867 |
-3.931204 |
31.862407 |
5.327731e-05 |
* |
|
|
| JN.1.16.3 |
52 |
141 |
10.573824 |
-4.030664 |
32.061329 |
4.820730e-05 |
* |
|
|
| JN.1.4 |
8971 |
136 |
10.231699 |
9.001183 |
5.997634 |
2.197708e+01 |
* |
* |
|
| CM.8.1 |
200 |
135 |
10.147548 |
10.147548 |
3.704904 |
6.940785e+01 |
* |
* |
|
| CM.4 |
76 |
143 |
10.147058 |
-13.794824 |
51.589649 |
2.768390e-09 |
|
|
|
| CM.8.1.4 |
19 |
143 |
10.147058 |
-13.954338 |
51.908676 |
2.359066e-09 |
|
|
|
| CM.6.1 |
14 |
143 |
10.147058 |
-13.674353 |
51.348706 |
3.121351e-09 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
147 |
13.542054 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 509_523, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9079_A|G, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21483_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27059_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27577_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28550_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MI-UM-10064755202/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: XFG.3 + NY.15 + XFG.3 | BC BR: 134-135, 146-147 | BC BR coord: 26872 - 26873, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-134,136-146,147-153 | Gap history (edge excluded): 134-147 -> 134-136 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.26e-01 | |
| Rec. model vs L1: 3.43e-22 | Rec. model vs L2: 1.17e-180 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
134 |
287.998031 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
139 |
281.013438 |
284.704425 |
-247.408850 |
4.882614e-08 |
|
|
|
| XFG.2 |
500 |
134 |
264.611688 |
278.175804 |
-234.351608 |
7.123762e-11 |
|
* |
|
| XFG.3.1 |
87 |
134 |
238.035180 |
250.992096 |
-179.984191 |
1.112792e-22 |
|
* |
|
| XFG.1 |
14 |
134 |
222.185044 |
235.870198 |
-149.740397 |
3.019127e-29 |
|
* |
|
| LF.7.1.8 |
44 |
134 |
213.864314 |
211.349996 |
-100.699992 |
6.776114e-40 |
|
* |
|
| LF.7.7.1 |
188 |
134 |
188.199426 |
192.510309 |
-63.020618 |
4.455256e-48 |
|
* |
|
| LF.7.1 |
165 |
134 |
183.904396 |
193.083008 |
-64.166015 |
7.917571e-48 |
|
* |
|
| LF.7.6 |
15 |
134 |
180.184030 |
177.699883 |
-33.399766 |
1.648054e-54 |
|
* |
|
| LF.7.3 |
54 |
134 |
170.077623 |
167.698837 |
-13.397673 |
7.482152e-59 |
|
* |
|
| |||||
NY.15 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NY.15 |
216 |
136 |
15.911165 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.11 |
31 |
141 |
12.700518 |
-1.884552 |
27.769104 |
4.117888e-04 |
* |
|
|
| MD.1.1 |
24 |
141 |
12.312095 |
-2.272976 |
28.545951 |
2.788044e-04 |
* |
|
|
| LF.9 |
48 |
141 |
10.653867 |
-3.931204 |
31.862407 |
5.327731e-05 |
* |
|
|
| JN.1.16.3 |
52 |
141 |
10.573824 |
-4.030664 |
32.061329 |
4.820730e-05 |
* |
|
|
| JN.1.4 |
8971 |
136 |
10.231699 |
9.001183 |
5.997634 |
2.197708e+01 |
* |
* |
|
| CM.8.1 |
200 |
135 |
10.147548 |
10.147548 |
3.704904 |
6.940785e+01 |
* |
* |
|
| CM.4 |
76 |
143 |
10.147058 |
-13.794824 |
51.589649 |
2.768390e-09 |
|
|
|
| CM.8.1.4 |
19 |
143 |
10.147058 |
-13.954338 |
51.908676 |
2.359066e-09 |
|
|
|
| CM.6.1 |
14 |
143 |
10.147058 |
-13.674353 |
51.348706 |
3.121351e-09 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
147 |
13.542054 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 509_523, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9079_A|G, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21483_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27059_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27577_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28550_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MN-MDH-47445/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: MC.33 + XFG.3 | BC BR: 5-6 | BC BR coord: 1426 - 1427 |
| Direction L1: << | Initial region span: 1-5,6-153 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.62e-01 | |
| Rec. model vs L1: 2.16e-233 | Rec. model vs L2: 1.37e-15 | |
| Flags: Model_1BP_Best | | |
MC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.33 |
31 |
5 |
12.303173 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.4.1.1 |
12 |
4 |
9.895496 |
-0.104504 |
10.209008 |
4.077608e-06 |
|
* |
|
| NY.12 |
62 |
4 |
9.335620 |
-0.664380 |
11.328760 |
2.329167e-06 |
|
* |
|
| JN.13 |
15 |
4 |
9.161527 |
-0.838473 |
11.676947 |
1.955235e-06 |
|
* |
|
| LF.7.1 |
165 |
5 |
7.947883 |
7.947883 |
-5.895765 |
1.284244e-02 |
* |
* |
|
| MD.1 |
19 |
4 |
7.826526 |
-2.173474 |
14.346949 |
5.145362e-07 |
|
* |
|
| KP.2.3.13 |
25 |
4 |
7.552089 |
-2.447911 |
14.895822 |
3.908273e-07 |
|
* |
|
| MC.29 |
54 |
4 |
7.475128 |
-2.524872 |
15.049744 |
3.625875e-07 |
|
* |
|
| XFJ.1 |
59 |
4 |
7.334994 |
-2.665006 |
15.330012 |
3.152184e-07 |
|
* |
|
| KP.3.2 |
737 |
5 |
7.309689 |
7.309689 |
-4.619377 |
6.771721e-03 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
6 |
320.978235 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
6 |
312.095267 |
304.556637 |
-269.113274 |
7.357210e-08 |
|
* |
|
| LF.7 |
58 |
6 |
295.993193 |
295.993193 |
-251.986386 |
1.409783e-11 |
|
* |
|
| XFG.3.1 |
87 |
6 |
262.157898 |
262.157898 |
-184.315796 |
2.849696e-26 |
|
* |
|
| XFG.1 |
14 |
6 |
247.211449 |
247.211449 |
-154.422899 |
9.164232e-33 |
|
* |
|
| LF.7.1 |
165 |
1 |
212.378145 |
204.430262 |
-68.860524 |
2.415339e-51 |
|
|
|
| LF.7.1.8 |
44 |
16 |
202.916100 |
197.408311 |
-54.816622 |
2.158892e-54 |
|
|
|
| LF.7.7.1 |
188 |
12 |
196.168587 |
186.726282 |
-33.452563 |
4.940767e-59 |
|
|
|
| LF.7.6 |
15 |
12 |
182.840632 |
182.234498 |
-24.468997 |
5.543858e-61 |
|
|
|
| LF.7.1.2 |
26 |
16 |
181.151893 |
175.612183 |
-11.224366 |
7.355482e-64 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1288_C|T, 1426_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6541_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19217_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28281_A|G, 28297_T|C, 28311_C|T, 28362_28370, 28528_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MN-MDH-47488/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: KP.4.1.1 + XFG.2 | BC BR: 6-7 | BC BR coord: 3037 - 3038 |
| Direction L1: << | Initial region span: 1-6,8-153 | Gap history (edge excluded): 6-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.16e-01 | |
| Rec. model vs L1: 1.54e-218 | Rec. model vs L2: 2.58e-11 | |
| Flags: Model_1BP_Best | | |
KP.4.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.4.1.1 |
12 |
6 |
10.976590 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.13 |
15 |
6 |
10.242621 |
10.242621 |
-6.485242 |
0.481909 |
* |
* |
|
| JN.1.46 |
308 |
7 |
9.884875 |
7.197732 |
-0.395465 |
0.022937 |
* |
* |
|
| MC.33 |
31 |
6 |
9.804366 |
9.804366 |
-5.608732 |
0.310367 |
* |
* |
|
| NY.12 |
62 |
4 |
9.335620 |
4.042019 |
5.915962 |
0.000973 |
* |
|
|
| MD.1 |
19 |
6 |
8.907620 |
8.907620 |
-3.815240 |
0.126818 |
* |
* |
|
| JN.18 |
316 |
7 |
8.745078 |
6.083578 |
1.832845 |
0.007521 |
* |
* |
|
| KP.2.3.13 |
25 |
6 |
8.633183 |
8.633183 |
-3.266366 |
0.096328 |
* |
* |
|
| MC.24 |
831 |
7 |
8.586741 |
6.892128 |
0.215744 |
0.016823 |
* |
* |
|
| XFJ.1 |
59 |
6 |
8.416088 |
8.416088 |
-2.832176 |
0.077305 |
* |
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
8 |
311.024223 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
8 |
306.810313 |
296.810313 |
-257.620627 |
1.477232e-02 |
* |
* |
|
| LF.7 |
58 |
8 |
294.929491 |
284.929491 |
-233.858981 |
1.023364e-07 |
|
* |
|
| XFG.3.1 |
87 |
17 |
261.178496 |
251.076804 |
-166.153608 |
2.027639e-22 |
|
|
|
| XFG.1 |
14 |
17 |
247.451939 |
236.130355 |
-136.260711 |
6.553293e-29 |
|
|
|
| LF.7.1 |
165 |
17 |
219.915996 |
193.349168 |
-50.698336 |
1.727196e-47 |
|
|
|
| LF.7.1.8 |
44 |
17 |
212.916100 |
186.327217 |
-36.654434 |
1.536112e-50 |
|
|
|
| LF.7.7.1 |
188 |
17 |
205.348216 |
175.645188 |
-15.290375 |
3.533116e-55 |
|
|
|
| LF.7.6 |
15 |
17 |
192.014928 |
171.153404 |
-6.306808 |
3.964383e-57 |
|
|
|
| LF.7.1.2 |
26 |
17 |
191.151893 |
164.570310 |
6.859381 |
5.474525e-60 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3092_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5037_G|A, 5239_C|T, 6183_A|G, 6541_C|T, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17825_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24902_A|G, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28281_A|G, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MN-MDH-47506/2025
| Target: 530 samples | Number of changes: 150 | |
| BC: JN.11 + LF.7 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-150 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.94e-228 | Rec. model vs L2: 4.16e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
4 |
8.712905 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
4 |
8.417788 |
8.417788 |
-8.835576 |
0.744532 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
8.235466 |
-8.470933 |
0.618783 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
7.675851 |
-7.351701 |
0.353455 |
* |
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
7.629331 |
-7.258661 |
0.337902 |
* |
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
7.408788 |
-6.817576 |
0.271173 |
* |
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
7.277693 |
-6.555386 |
0.238115 |
* |
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
7.254637 |
-6.509274 |
0.232236 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
7.162322 |
-6.324644 |
0.211189 |
* |
* |
|
| LP.8.1.10 |
32 |
4 |
7.156197 |
7.156197 |
-6.312394 |
0.210136 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
6 |
325.993193 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
6 |
325.966793 |
315.966793 |
-293.933586 |
9.704455e-01 |
* |
* |
|
| XFG.2 |
500 |
5 |
321.585552 |
314.046922 |
-290.093844 |
1.422741e-01 |
* |
* |
|
| XFG.3.1 |
87 |
6 |
292.157898 |
282.157898 |
-226.315796 |
2.021372e-15 |
|
* |
|
| XFG.1 |
14 |
6 |
277.211449 |
267.211449 |
-196.422899 |
6.500454e-22 |
|
* |
|
| LF.7.1 |
165 |
12 |
235.054745 |
224.430262 |
-110.860524 |
1.713270e-40 |
|
|
|
| LF.7.1.8 |
44 |
12 |
228.014445 |
217.408311 |
-96.816622 |
1.531364e-43 |
|
|
|
| LF.7.7.1 |
188 |
12 |
226.168587 |
218.091249 |
-98.182497 |
3.022726e-43 |
|
|
|
| LF.7.6 |
15 |
12 |
212.840632 |
202.234498 |
-66.468997 |
3.932419e-50 |
|
|
|
| LF.7.3 |
54 |
12 |
209.604289 |
198.922305 |
-59.844610 |
1.428807e-51 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18636_G|A, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/MN-MDH-47532/2025
| Target: 530 samples | Number of changes: 154 | |
| BC: LF.7.7.1 + XFG.2 | BC BR: 10-11 | BC BR coord: 3566 - 3567 |
| Direction L1: << | Initial region span: 1-10,12-154 | Gap history (edge excluded): 10-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.77e-63 | Rec. model vs L2: 3.13e-16 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7.7.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.7.1 |
188 |
10 |
14.577215 |
NaN |
NaN |
NaN |
* |
* |
* |
| LB.1.3.1 |
292 |
10 |
14.371388 |
14.371388 |
-8.742775 |
0.814647 |
* |
* |
|
| LB.1.3 |
778 |
10 |
12.936862 |
12.936862 |
-5.873723 |
0.193980 |
* |
* |
|
| KP.3.1.1 |
12013 |
10 |
12.053449 |
12.053449 |
-4.106898 |
0.080460 |
* |
* |
|
| KP.2.2 |
1334 |
10 |
11.322836 |
11.322836 |
-2.645672 |
0.038774 |
* |
* |
|
| KP.1.1.1 |
578 |
10 |
11.188305 |
11.188305 |
-2.376610 |
0.033878 |
* |
* |
|
| XEC.2 |
921 |
10 |
10.708486 |
10.708486 |
-1.416972 |
0.020963 |
* |
* |
|
| LB.1.7 |
1971 |
10 |
10.525027 |
10.525027 |
-1.050055 |
0.017422 |
* |
* |
|
| KP.1.1.3 |
979 |
10 |
10.313570 |
10.313570 |
-0.627140 |
0.014122 |
* |
* |
|
| JN.1 |
17255 |
10 |
10.293289 |
10.293289 |
-0.586578 |
0.013843 |
* |
* |
|
| |||||
XFG.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
12 |
306.368618 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
12 |
297.746406 |
287.746406 |
-243.492811 |
1.795602e-04 |
* |
* |
|
| XFG.3 |
480 |
12 |
297.741957 |
287.741957 |
-243.483913 |
1.786646e-04 |
* |
* |
|
| XFG.3.1 |
87 |
12 |
264.002452 |
254.002452 |
-176.004904 |
3.971392e-19 |
|
* |
|
| XFG.1 |
14 |
12 |
248.894160 |
238.894160 |
-145.788321 |
1.093767e-25 |
|
* |
|
| LF.7.1 |
165 |
14 |
215.054745 |
196.131322 |
-60.262644 |
2.926315e-44 |
|
|
|
| LF.7.1.8 |
44 |
14 |
208.014445 |
189.091022 |
-46.182044 |
2.563823e-47 |
|
|
|
| LF.7.7.1 |
188 |
14 |
206.168587 |
178.414326 |
-24.828652 |
5.926447e-52 |
|
|
|
| LF.7.6 |
15 |
14 |
192.840632 |
173.917209 |
-15.834418 |
6.583688e-54 |
|
|
|
| LF.7.3 |
54 |
14 |
189.604289 |
170.662174 |
-9.324348 |
2.540041e-55 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2334_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3931_T|A, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11541_T|G, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16323_C|T, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT,
21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25520_T|C, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): USA/MN-MDH-47545/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: XFG.3 + PQ.5 | BC BR: 145-146 | BC BR coord: 28361 - 28362 |
| Direction L1: >> | Initial region span: 1-145,146-152 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.24e-35 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
145 |
287.019003 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
145 |
283.539487 |
283.539487 |
-237.078974 |
3.080741e-02 |
* |
* |
|
| LF.7 |
58 |
145 |
279.587062 |
279.587062 |
-229.174125 |
5.902290e-04 |
* |
* |
|
| XFG.3.1 |
87 |
145 |
243.919801 |
243.919801 |
-157.839603 |
1.913850e-19 |
|
* |
|
| XFG.1 |
14 |
145 |
228.245114 |
228.245114 |
-126.490229 |
2.980862e-26 |
|
* |
|
| LF.7.1.8 |
44 |
145 |
208.605626 |
208.605626 |
-87.211252 |
8.806396e-35 |
|
* |
|
| LF.7.6 |
15 |
145 |
200.443583 |
200.443583 |
-70.887166 |
2.517417e-38 |
|
* |
|
| LF.7.1 |
165 |
145 |
189.939926 |
189.939926 |
-49.879851 |
6.897500e-43 |
|
* |
|
| LF.7.7.1 |
188 |
145 |
184.706097 |
184.706097 |
-39.412194 |
3.674177e-45 |
|
* |
|
| LF.7.3 |
54 |
145 |
176.001218 |
176.001218 |
-22.002436 |
6.090131e-49 |
|
* |
|
| |||||
PQ.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| PQ.5 |
11 |
146 |
16.976002 |
NaN |
NaN |
NaN |
* |
* |
* |
| PQ.14 |
26 |
146 |
16.936781 |
16.936781 |
-19.873562 |
9.607894e-01 |
* |
* |
|
| PQ.12 |
17 |
146 |
16.915377 |
16.915377 |
-19.830754 |
9.417645e-01 |
* |
* |
|
| PQ.10 |
24 |
146 |
16.888990 |
16.888990 |
-19.777980 |
9.185123e-01 |
* |
* |
|
| PQ.1 |
52 |
146 |
16.773809 |
16.773809 |
-19.547619 |
8.187308e-01 |
* |
* |
|
| NB.1.8.1 |
357 |
146 |
16.760158 |
16.760158 |
-19.520315 |
8.065414e-01 |
* |
* |
|
| PQ.2 |
91 |
146 |
16.746984 |
16.746984 |
-19.493968 |
7.945336e-01 |
* |
* |
|
| PQ.8 |
13 |
146 |
16.728905 |
16.728905 |
-19.457810 |
7.827045e-01 |
* |
* |
|
| PQ.4 |
29 |
146 |
16.635001 |
16.635001 |
-19.270001 |
7.117703e-01 |
* |
* |
|
| DV.7.1.1 |
23 |
147 |
8.685330 |
-1.314670 |
16.629341 |
1.139604e-08 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4714_T|C, 5239_C|T, 6183_A|G, 6543_C|T, 7842_A|G, 7869_C|T, 8152_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 14781_T|C, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23593_G|C, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28432_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 29164_T|C, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NJ-GBW-GKISBBBH44036/2025
| Target: 530 samples | Number of changes: 151 | |
| BC: XFG.3 + HV.1.11 + XFG.3 | BC BR: 6-7, 8-9 | BC BR coord: 896 - 897, 2789 - 2790 |
| Direction L1: << | Initial region span: 1-6,7-8,9-151 | Gap history (edge excluded): 6-9 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.47e-10 | |
| Rec. model vs L1: 1.39e-16 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
6 |
9.468747 |
None |
None |
None |
* |
* |
* |
| |||||
HV.1.11 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| HV.1.11 |
24 |
7 |
8.135609 |
NaN |
NaN |
NaN |
* |
* |
* |
| HK.1 |
30 |
7 |
7.219319 |
7.219319 |
-6.438637 |
4.005166e-01 |
* |
* |
|
| HV.1.1 |
536 |
7 |
6.732410 |
6.732410 |
-5.464820 |
2.453671e-01 |
* |
* |
|
| EG.5.1.16 |
519 |
7 |
5.976122 |
5.976122 |
-3.952243 |
1.153251e-01 |
* |
* |
|
| B.1.1.428 |
42 |
8 |
5.908262 |
-10.951078 |
29.902156 |
5.146237e-09 |
|
* |
|
| A.27 |
515 |
8 |
5.908262 |
-12.451723 |
32.903445 |
1.148281e-09 |
|
* |
|
| AY.71 |
260 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| AY.72 |
300 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| AY.73 |
462 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| B.1.1.181 |
17 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
315.994603 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
315.327180 |
315.214487 |
-286.428974 |
3.535750e-05 |
* |
* |
|
| XFG.2 |
500 |
8 |
312.290173 |
309.452453 |
-274.904907 |
1.108597e-07 |
|
* |
|
| XFG.3.1 |
87 |
9 |
282.463746 |
281.132481 |
-218.264963 |
5.566140e-20 |
|
* |
|
| XFG.1 |
14 |
9 |
266.537744 |
264.522890 |
-185.045781 |
3.420537e-27 |
|
* |
|
| LF.7.1 |
165 |
15 |
224.326654 |
234.135537 |
-124.271074 |
2.167130e-40 |
|
|
|
| LF.7.1.8 |
44 |
15 |
217.547602 |
214.176278 |
-84.352557 |
4.649081e-49 |
|
|
|
| LF.7.7.1 |
188 |
1 |
215.652269 |
214.811489 |
-85.622979 |
8.772919e-49 |
|
|
|
| LF.7.6 |
15 |
15 |
202.353703 |
200.916485 |
-57.832971 |
8.102560e-55 |
|
|
|
| LF.7.3 |
54 |
15 |
199.011999 |
196.199305 |
-48.398611 |
7.259786e-57 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2334_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|A, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NJ-GBW-GKPLAAAA70247/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: XFG.3 + HV.1.11 + XFG.3 | BC BR: 6-7, 8-9 | BC BR coord: 896 - 897, 2789 - 2790 |
| Direction L1: << | Initial region span: 1-6,7-8,9-152 | Gap history (edge excluded): 6-9 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.47e-10 | |
| Rec. model vs L1: 1.39e-16 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
6 |
9.468747 |
None |
None |
None |
* |
* |
* |
| |||||
HV.1.11 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| HV.1.11 |
24 |
7 |
8.135609 |
NaN |
NaN |
NaN |
* |
* |
* |
| HK.1 |
30 |
7 |
7.219319 |
7.219319 |
-6.438637 |
4.005166e-01 |
* |
* |
|
| HV.1.1 |
536 |
7 |
6.732410 |
6.732410 |
-5.464820 |
2.453671e-01 |
* |
* |
|
| EG.5.1.16 |
519 |
7 |
5.976122 |
5.976122 |
-3.952243 |
1.153251e-01 |
* |
* |
|
| B.1.1.428 |
42 |
8 |
5.908262 |
-10.951078 |
29.902156 |
5.146237e-09 |
|
* |
|
| A.27 |
515 |
8 |
5.908262 |
-12.451723 |
32.903445 |
1.148281e-09 |
|
* |
|
| AY.71 |
260 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| AY.72 |
300 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| AY.73 |
462 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| B.1.1.181 |
17 |
8 |
5.908262 |
-4.091738 |
16.183477 |
4.906253e-06 |
|
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
320.273315 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
320.178790 |
320.066097 |
-294.132194 |
6.283489e-05 |
* |
* |
|
| XFG.2 |
500 |
8 |
314.987618 |
312.149898 |
-278.299797 |
2.294880e-08 |
|
* |
|
| XFG.3.1 |
87 |
9 |
285.811278 |
284.480014 |
-222.960028 |
2.207149e-20 |
|
* |
|
| XFG.1 |
14 |
9 |
256.537744 |
254.522890 |
-163.045781 |
2.160432e-33 |
|
* |
|
| LF.7.1 |
165 |
15 |
228.643587 |
238.452470 |
-130.904940 |
2.255572e-40 |
|
|
|
| LF.7.7.1 |
188 |
1 |
220.021027 |
219.180248 |
-92.360495 |
9.647218e-49 |
|
|
|
| LF.7.1.8 |
44 |
15 |
207.547602 |
204.176278 |
-62.352557 |
2.936388e-55 |
|
|
|
| LF.7.1.2 |
26 |
15 |
201.202901 |
198.835611 |
-51.671222 |
1.408254e-57 |
|
|
|
| PC.3 |
42 |
15 |
199.379236 |
196.551829 |
-47.103658 |
1.433237e-58 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 2334_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|A, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 13427_G|A, 14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NJ-PHEL-V25011860/2025
| Target: 530 samples | Number of changes: 150 | |
| BC: JN.1.53.1 + LF.7 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-150 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.44e-201 | Rec. model vs L2: 6.10e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.53.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.53.1 |
12 |
4 |
10.761787 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.4 |
91 |
4 |
9.333671 |
9.333671 |
-10.667342 |
0.240508 |
* |
* |
|
| NL.18 |
10 |
4 |
8.546213 |
8.546213 |
-9.092426 |
0.109154 |
* |
* |
|
| XEC.17 |
13 |
4 |
8.283849 |
8.283849 |
-8.567698 |
0.084163 |
* |
* |
|
| LD.2 |
13 |
4 |
8.283849 |
8.283849 |
-8.567698 |
0.084163 |
* |
* |
|
| JN.1.1.10 |
17 |
4 |
8.015585 |
8.015585 |
-8.031170 |
0.064248 |
* |
* |
|
| JN.1.64.1 |
14 |
4 |
7.901440 |
7.901440 |
-7.802879 |
0.057269 |
* |
* |
|
| MC.10.1.5 |
19 |
4 |
7.850292 |
7.850292 |
-7.700584 |
0.054476 |
* |
* |
|
| JN.1.7.2 |
180 |
5 |
7.462227 |
5.610990 |
-3.221981 |
0.005799 |
* |
* |
|
| XEC.2 |
921 |
5 |
7.340305 |
3.986077 |
0.027846 |
0.001142 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
6 |
346.907477 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
1 |
320.935805 |
315.176827 |
-290.353655 |
3.654104e-10 |
|
|
|
| XFG.2 |
500 |
6 |
308.801106 |
291.262476 |
-242.524952 |
1.501856e-20 |
|
* |
|
| XFG.3.1 |
87 |
3 |
288.165668 |
283.451414 |
-226.902828 |
6.092401e-24 |
|
|
|
| XFG.1 |
14 |
6 |
264.571728 |
254.571728 |
-169.143455 |
1.747285e-36 |
|
* |
|
| LF.7.1 |
165 |
16 |
227.427289 |
211.941555 |
-83.883111 |
5.350447e-55 |
|
|
|
| LF.7.1.8 |
44 |
16 |
220.622921 |
205.115133 |
-70.230265 |
5.812062e-58 |
|
|
|
| LF.7.7.1 |
188 |
12 |
218.986556 |
199.544250 |
-59.088501 |
2.214675e-60 |
|
|
|
| LF.7.1.2 |
26 |
16 |
213.318683 |
197.778973 |
-55.557947 |
3.791231e-61 |
|
|
|
| LF.7.6 |
15 |
12 |
200.487112 |
189.880978 |
-39.761956 |
1.405574e-64 |
|
|
|
|
Target sequence
, 241_C|T, 583_C|T, 670_T|G, 897_C|A, 2445_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6673_T|C, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22883_C|A,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24034_C|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): USA/NJ-PHEL-V25012011/2025
| Target: 530 samples | Number of changes: 150 | |
| BC: JN.1.7.8 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,5-150 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.80e-210 | Rec. model vs L2: 1.27e-14 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.7.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.7.8 |
34 |
4 |
10.445059 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.11 |
43 |
4 |
9.890658 |
9.890658 |
-9.781316 |
5.740723e-01 |
* |
* |
|
| MC.37 |
21 |
3 |
8.888229 |
-4.739126 |
19.478252 |
2.542367e-07 |
|
* |
|
| KP.2.3.3 |
149 |
4 |
7.472009 |
7.472009 |
-4.944018 |
5.104743e-02 |
* |
* |
|
| LA.1 |
149 |
4 |
7.449603 |
7.449603 |
-4.899205 |
5.003663e-02 |
* |
* |
|
| JN.1.16.1 |
466 |
4 |
5.159737 |
5.159737 |
-0.319475 |
5.067032e-03 |
* |
* |
|
| KP.3.2 |
737 |
4 |
4.943160 |
4.943160 |
0.113679 |
4.086771e-03 |
* |
* |
|
| MC.10.1 |
650 |
4 |
4.484871 |
4.484871 |
1.030257 |
2.579912e-03 |
* |
* |
|
| BA.5.2.23 |
644 |
3 |
4.295678 |
-5.704322 |
21.408643 |
9.685992e-08 |
|
* |
|
| LB.1.3 |
778 |
4 |
4.119803 |
4.119803 |
1.760394 |
1.790966e-03 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
5 |
303.613273 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
5 |
303.571870 |
303.571870 |
-267.143740 |
9.559975e-01 |
* |
* |
|
| XFG.2 |
500 |
5 |
298.801106 |
291.262476 |
-242.524952 |
4.308159e-06 |
|
* |
|
| XFG.3.1 |
87 |
5 |
282.540815 |
282.540815 |
-225.081629 |
7.034671e-10 |
|
* |
|
| XFG.1 |
14 |
5 |
254.571728 |
254.571728 |
-169.143455 |
5.012185e-22 |
|
* |
|
| LF.7.1.8 |
44 |
11 |
219.754954 |
219.148820 |
-98.297641 |
2.076427e-37 |
|
|
|
| LF.7.1 |
165 |
11 |
212.566038 |
211.941555 |
-83.883111 |
1.534806e-40 |
|
|
|
| LF.7.7.1 |
188 |
11 |
208.986556 |
199.544250 |
-59.088501 |
6.352918e-46 |
|
|
|
| LF.7.6 |
15 |
11 |
190.487112 |
189.880978 |
-39.761956 |
4.031968e-50 |
|
|
|
| LF.7.3 |
54 |
11 |
187.040048 |
186.358064 |
-32.716127 |
1.193440e-51 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 896_G|A, 897_C|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17550_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19648_G|T, 19955_C|T, 20055_A|G, 20178_C|T, 20670_G|A, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): USA/NJ-PHEL-V25012357/2025
| Target: 530 samples | Number of changes: 151 | |
| BC: JN.4 + LF.7 | BC BR: 5-6 | BC BR coord: 1514 - 1515 |
| Direction L1: << | Initial region span: 1-5,7-151 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.49e-238 | Rec. model vs L2: 2.40e-15 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.4 |
91 |
5 |
11.875704 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.53.1 |
12 |
4 |
10.761787 |
0.761787 |
10.476426 |
1.488733e-05 |
* |
* |
|
| NL.18 |
10 |
4 |
8.546213 |
-1.453787 |
14.907574 |
1.625004e-06 |
|
* |
|
| LD.2 |
13 |
4 |
8.283849 |
-8.043214 |
28.086428 |
2.232821e-09 |
|
* |
|
| XEC.17 |
13 |
4 |
8.283849 |
-1.716151 |
15.432302 |
1.252962e-06 |
|
* |
|
| JN.1.1.10 |
17 |
4 |
8.015585 |
-1.984415 |
15.968830 |
9.564857e-07 |
|
* |
|
| JN.1.64.1 |
14 |
4 |
7.901440 |
-2.098560 |
16.197121 |
8.525790e-07 |
|
* |
|
| MC.10.1.5 |
19 |
4 |
7.850292 |
-2.149708 |
16.299416 |
8.109982e-07 |
|
* |
|
| KP.4.1.2 |
32 |
4 |
7.286775 |
-2.713225 |
17.426450 |
4.609391e-07 |
|
* |
|
| JN.1.18.5 |
37 |
4 |
7.237880 |
-2.762120 |
17.524239 |
4.406566e-07 |
|
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
7 |
346.907477 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
6 |
315.176827 |
315.176827 |
-290.353655 |
3.654104e-10 |
|
* |
|
| XFG.2 |
500 |
7 |
308.801106 |
291.262476 |
-242.524952 |
1.501856e-20 |
|
* |
|
| XFG.3.1 |
87 |
6 |
283.451414 |
283.451414 |
-226.902828 |
6.092401e-24 |
|
* |
|
| XFG.1 |
14 |
7 |
264.571728 |
254.571728 |
-169.143455 |
1.747285e-36 |
|
* |
|
| LF.7.1 |
165 |
17 |
227.427289 |
211.941555 |
-83.883111 |
5.350447e-55 |
|
|
|
| LF.7.1.8 |
44 |
17 |
220.622921 |
205.115133 |
-70.230265 |
5.812062e-58 |
|
|
|
| LF.7.7.1 |
188 |
13 |
218.986556 |
199.544250 |
-59.088501 |
2.214675e-60 |
|
|
|
| LF.7.1.2 |
26 |
17 |
213.318683 |
197.778973 |
-55.557947 |
3.791231e-61 |
|
|
|
| LF.7.6 |
15 |
13 |
200.487112 |
189.880978 |
-39.761956 |
1.405574e-64 |
|
|
|
|
Target sequence
, 241_C|T, 583_C|T, 670_T|G, 897_C|A, 1514_C|T, 2445_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6673_T|C, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22883_C|A, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24034_C|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): USA/NY-PRL-250520_81F07/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: KS.1.3 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,9-155 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.00e-214 | Rec. model vs L2: 1.13e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KS.1.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KS.1.3 |
45 |
4 |
10.286720 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1 |
1957 |
8 |
8.879327 |
4.771811 |
-1.543623 |
0.004026 |
* |
|
|
| KP.3.2.9 |
28 |
4 |
8.768748 |
8.768748 |
-9.537496 |
0.219808 |
* |
* |
|
| LK.2.1 |
10 |
4 |
8.699755 |
8.699755 |
-9.399510 |
0.204948 |
* |
* |
|
| PR.2 |
20 |
4 |
8.648462 |
8.648462 |
-9.296923 |
0.194952 |
* |
* |
|
| KR.1.1 |
33 |
4 |
8.541924 |
8.541924 |
-9.083849 |
0.174645 |
* |
* |
|
| JN.2.5 |
25 |
4 |
8.435789 |
8.435789 |
-8.871579 |
0.157237 |
* |
* |
|
| KP.2.15 |
253 |
4 |
8.319432 |
8.319432 |
-8.638864 |
0.140156 |
* |
* |
|
| JN.1.16.5 |
24 |
4 |
7.781727 |
7.781727 |
-7.563453 |
0.081676 |
* |
* |
|
| LF.7.3.1 |
26 |
4 |
7.705023 |
7.705023 |
-7.410046 |
0.075774 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
285.079706 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
257.824674 |
238.888377 |
-127.776754 |
5.634715e-17 |
|
* |
|
| XFG.2 |
500 |
9 |
255.322126 |
238.966995 |
-127.933989 |
6.073570e-17 |
|
* |
|
| XFG.3.1 |
87 |
18 |
238.660957 |
219.640359 |
-89.280718 |
2.458687e-25 |
|
|
|
| XFG.1 |
14 |
18 |
223.954846 |
203.714357 |
-57.428715 |
2.982384e-32 |
|
|
|
| LF.7.1.8 |
44 |
18 |
204.917733 |
169.409944 |
11.180111 |
3.767830e-47 |
|
|
|
| LF.7.7.1 |
188 |
18 |
203.503019 |
164.881084 |
20.237832 |
4.061976e-49 |
|
|
|
| LF.7.1 |
165 |
18 |
185.740514 |
150.254780 |
49.490440 |
1.807926e-55 |
|
|
|
| LF.7.6 |
15 |
18 |
182.806258 |
153.025828 |
43.948344 |
2.885202e-54 |
|
|
|
| LF.7.3 |
54 |
18 |
178.114496 |
160.596294 |
28.807413 |
5.594812e-51 |
|
|
|
|
Target sequence
, 241_C|T, 313_C|T, 670_T|G, 897_C|A, 934_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4584_A|G, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 15763_C|T, 16376_C|T, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22001_A|G, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): USA/NY-PRL-250520_81F07/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: KS.1.3 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,9-155 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.00e-214 | Rec. model vs L2: 1.13e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KS.1.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KS.1.3 |
45 |
4 |
10.286720 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1 |
1957 |
8 |
8.879327 |
4.771811 |
-1.543623 |
0.004026 |
* |
|
|
| KP.3.2.9 |
28 |
4 |
8.768748 |
8.768748 |
-9.537496 |
0.219808 |
* |
* |
|
| LK.2.1 |
10 |
4 |
8.699755 |
8.699755 |
-9.399510 |
0.204948 |
* |
* |
|
| PR.2 |
20 |
4 |
8.648462 |
8.648462 |
-9.296923 |
0.194952 |
* |
* |
|
| KR.1.1 |
33 |
4 |
8.541924 |
8.541924 |
-9.083849 |
0.174645 |
* |
* |
|
| JN.2.5 |
25 |
4 |
8.435789 |
8.435789 |
-8.871579 |
0.157237 |
* |
* |
|
| KP.2.15 |
253 |
4 |
8.319432 |
8.319432 |
-8.638864 |
0.140156 |
* |
* |
|
| JN.1.16.5 |
24 |
4 |
7.781727 |
7.781727 |
-7.563453 |
0.081676 |
* |
* |
|
| LF.7.3.1 |
26 |
4 |
7.705023 |
7.705023 |
-7.410046 |
0.075774 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
285.079706 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
9 |
257.824674 |
238.888377 |
-127.776754 |
5.634715e-17 |
|
* |
|
| XFG.2 |
500 |
9 |
255.322126 |
238.966995 |
-127.933989 |
6.073570e-17 |
|
* |
|
| XFG.3.1 |
87 |
18 |
238.660957 |
219.640359 |
-89.280718 |
2.458687e-25 |
|
|
|
| XFG.1 |
14 |
18 |
223.954846 |
203.714357 |
-57.428715 |
2.982384e-32 |
|
|
|
| LF.7.1.8 |
44 |
18 |
204.917733 |
169.409944 |
11.180111 |
3.767830e-47 |
|
|
|
| LF.7.7.1 |
188 |
18 |
203.503019 |
164.881084 |
20.237832 |
4.061976e-49 |
|
|
|
| LF.7.1 |
165 |
18 |
185.740514 |
150.254780 |
49.490440 |
1.807926e-55 |
|
|
|
| LF.7.6 |
15 |
18 |
182.806258 |
153.025828 |
43.948344 |
2.885202e-54 |
|
|
|
| LF.7.3 |
54 |
18 |
178.114496 |
160.596294 |
28.807413 |
5.594812e-51 |
|
|
|
|
Target sequence
, 241_C|T, 313_C|T, 670_T|G, 897_C|A, 934_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4584_A|G, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 15763_C|T, 16376_C|T, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22001_A|G, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): USA/NY-PRL-250708_81D01/2025
| Target: 530 samples | Number of changes: 155 | |
| BC: XFG.3 + KP.3.1.5 + XFG.3 | BC BR: 3-4, 7-8 | BC BR coord: 896 - 897, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-155 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.82e-02 | |
| Rec. model vs L1: 5.55e-09 | Rec. model vs L2: 3.08e-218 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.704173 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
5 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
5 |
7.613984 |
-2.386016 |
22.772033 |
1.000000e+00 |
* |
* |
|
| NL.11 |
57 |
5 |
7.208518 |
-2.791482 |
23.582963 |
6.669768e-01 |
* |
* |
|
| XBB.4 |
49 |
4 |
6.609415 |
6.609415 |
4.781171 |
8.062670e+03 |
* |
* |
|
| B.1.1.304 |
143 |
6 |
6.536776 |
-19.539319 |
57.078638 |
3.545505e-08 |
|
* |
|
| AZ.5 |
21 |
6 |
6.536776 |
-23.368480 |
64.736960 |
7.697156e-10 |
|
* |
|
| B.1.1.434 |
1274 |
6 |
6.534418 |
-27.588067 |
73.176135 |
1.131378e-11 |
|
* |
|
| XBB.1.5.92 |
41 |
4 |
6.272764 |
6.272764 |
5.454472 |
5.767535e+03 |
* |
* |
|
| JE.1.1.1 |
46 |
5 |
5.577102 |
-11.675249 |
41.350497 |
9.234306e-05 |
* |
* |
|
| LE.1.2 |
19 |
5 |
5.362692 |
-12.680191 |
43.360383 |
3.380168e-05 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
272.723168 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
8 |
262.666982 |
267.385801 |
-184.771602 |
4.361977e-05 |
* |
* |
|
| XFG.2 |
500 |
8 |
245.322126 |
250.010745 |
-150.021491 |
1.241129e-12 |
|
* |
|
| XFG.3.1 |
87 |
8 |
228.559265 |
233.278084 |
-116.556168 |
6.730853e-20 |
|
* |
|
| XFG.1 |
14 |
8 |
212.633263 |
217.352082 |
-84.704165 |
8.123796e-27 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
184.917733 |
182.978160 |
-15.956320 |
9.617399e-42 |
|
|
|
| LF.7.1 |
165 |
16 |
165.740514 |
163.861961 |
22.276079 |
4.779111e-50 |
|
|
|
| LF.7.7.1 |
188 |
34 |
163.425568 |
156.919941 |
36.160117 |
4.627468e-53 |
|
|
|
| LF.7.1.2 |
26 |
16 |
161.575508 |
159.673523 |
30.652954 |
7.274862e-52 |
|
|
|
| LF.7.1.5 |
40 |
16 |
151.940084 |
150.116541 |
49.766919 |
5.128254e-56 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9598_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12754_C|T, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29734_29759
Case 58 (XFG): USA/NY-PRL-250708_81F10/2025
| Target: 530 samples | Number of changes: 151 | |
| BC: LD.1 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-151 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.19e-197 | Rec. model vs L2: 1.33e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LD.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LD.1 |
70 |
4 |
9.085704 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
4 |
8.457912 |
8.457912 |
-8.915824 |
0.535261 |
* |
* |
|
| BA.5.1.17 |
357 |
3 |
8.456578 |
-1.543422 |
11.086845 |
0.000024 |
* |
* |
|
| JN.1.29 |
69 |
4 |
7.971640 |
7.971640 |
-7.943281 |
0.327915 |
* |
* |
|
| KP.2 |
1589 |
5 |
7.815486 |
6.243829 |
-4.487657 |
0.058426 |
* |
* |
|
| MC.8 |
93 |
4 |
7.731975 |
7.731975 |
-7.463950 |
0.257947 |
* |
* |
|
| XEC.39 |
155 |
4 |
7.208205 |
7.208205 |
-6.416409 |
0.153355 |
* |
* |
|
| MC.9 |
298 |
4 |
6.547233 |
6.547233 |
-5.094467 |
0.078866 |
* |
* |
|
| MC.2 |
396 |
4 |
6.252566 |
6.252566 |
-4.505133 |
0.059013 |
* |
* |
|
| MC.1 |
932 |
4 |
6.073660 |
6.073660 |
-4.147321 |
0.049292 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
6 |
292.228759 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
6 |
288.888377 |
278.888377 |
-215.776754 |
3.543696e-02 |
* |
* |
|
| XFG.2 |
500 |
6 |
277.620087 |
269.918994 |
-197.837988 |
4.506454e-06 |
|
* |
|
| XFG.3.1 |
87 |
6 |
269.640359 |
259.640359 |
-177.280718 |
1.546278e-10 |
|
* |
|
| XFG.1 |
14 |
6 |
253.714357 |
243.714357 |
-145.428715 |
1.875634e-17 |
|
* |
|
| LF.7.7.1 |
188 |
14 |
211.719025 |
183.341668 |
-24.683335 |
1.128804e-43 |
|
|
|
| LF.7.1 |
165 |
14 |
209.808982 |
201.200980 |
-60.401960 |
6.443445e-36 |
|
|
|
| LF.7.1.8 |
44 |
14 |
201.708175 |
182.172322 |
-22.344644 |
3.503436e-44 |
|
|
|
| LF.7.6 |
15 |
14 |
198.460035 |
178.924182 |
-15.848364 |
1.365239e-45 |
|
|
|
| LF.7.3 |
54 |
14 |
195.118331 |
175.506628 |
-9.013256 |
4.466028e-47 |
|
|
|
|
Target sequence
, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26749_T|C, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28010_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250708_81F10/2025
| Target: 530 samples | Number of changes: 151 | |
| BC: LD.1 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-151 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.19e-197 | Rec. model vs L2: 1.33e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LD.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LD.1 |
70 |
4 |
9.085704 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
4 |
8.457912 |
8.457912 |
-8.915824 |
0.535261 |
* |
* |
|
| BA.5.1.17 |
357 |
3 |
8.456578 |
-1.543422 |
11.086845 |
0.000024 |
* |
* |
|
| JN.1.29 |
69 |
4 |
7.971640 |
7.971640 |
-7.943281 |
0.327915 |
* |
* |
|
| KP.2 |
1589 |
5 |
7.815486 |
6.243829 |
-4.487657 |
0.058426 |
* |
* |
|
| MC.8 |
93 |
4 |
7.731975 |
7.731975 |
-7.463950 |
0.257947 |
* |
* |
|
| XEC.39 |
155 |
4 |
7.208205 |
7.208205 |
-6.416409 |
0.153355 |
* |
* |
|
| MC.9 |
298 |
4 |
6.547233 |
6.547233 |
-5.094467 |
0.078866 |
* |
* |
|
| MC.2 |
396 |
4 |
6.252566 |
6.252566 |
-4.505133 |
0.059013 |
* |
* |
|
| MC.1 |
932 |
4 |
6.073660 |
6.073660 |
-4.147321 |
0.049292 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
6 |
292.228759 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
6 |
288.888377 |
278.888377 |
-215.776754 |
3.543696e-02 |
* |
* |
|
| XFG.2 |
500 |
6 |
277.620087 |
269.918994 |
-197.837988 |
4.506454e-06 |
|
* |
|
| XFG.3.1 |
87 |
6 |
269.640359 |
259.640359 |
-177.280718 |
1.546278e-10 |
|
* |
|
| XFG.1 |
14 |
6 |
253.714357 |
243.714357 |
-145.428715 |
1.875634e-17 |
|
* |
|
| LF.7.7.1 |
188 |
14 |
211.719025 |
183.341668 |
-24.683335 |
1.128804e-43 |
|
|
|
| LF.7.1 |
165 |
14 |
209.808982 |
201.200980 |
-60.401960 |
6.443445e-36 |
|
|
|
| LF.7.1.8 |
44 |
14 |
201.708175 |
182.172322 |
-22.344644 |
3.503436e-44 |
|
|
|
| LF.7.6 |
15 |
14 |
198.460035 |
178.924182 |
-15.848364 |
1.365239e-45 |
|
|
|
| LF.7.3 |
54 |
14 |
195.118331 |
175.506628 |
-9.013256 |
4.466028e-47 |
|
|
|
|
Target sequence
, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22567_G|T,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26749_T|C, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28010_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250715_81G02/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: LF.7 + KP.3.1.5 + LF.7 | BC BR: 4-5, 7-8 | BC BR coord: 2487 - 2488, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-153 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.72e-02 | |
| Rec. model vs L1: 5.52e-09 | Rec. model vs L2: 2.84e-220 | |
| Flags: Model_2BP_Best | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
3 |
4.718819 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
5 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
5 |
7.613984 |
7.613984 |
-7.227967 |
1.000000 |
* |
* |
|
| NL.11 |
57 |
5 |
7.208518 |
7.208518 |
-6.417037 |
0.666977 |
* |
* |
|
| XBB.4 |
49 |
4 |
6.609415 |
3.722163 |
0.555673 |
0.020343 |
* |
* |
|
| B.1.1.304 |
143 |
6 |
6.536776 |
-3.463224 |
14.926449 |
0.000015 |
* |
* |
|
| AZ.5 |
21 |
6 |
6.536776 |
-3.463224 |
14.926449 |
0.000015 |
* |
* |
|
| B.1.1.434 |
1274 |
6 |
6.534418 |
-3.465582 |
14.931164 |
0.000015 |
* |
* |
|
| XBB.1.5.92 |
41 |
4 |
6.272764 |
3.900411 |
0.199177 |
0.024355 |
* |
* |
|
| JE.1.1.1 |
46 |
5 |
5.577102 |
5.577102 |
-3.154203 |
0.130029 |
* |
* |
|
| LE.1.2 |
19 |
5 |
5.362692 |
-2.680191 |
13.360383 |
0.000034 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
8 |
282.666982 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
8 |
281.735746 |
276.439919 |
-204.879838 |
3.886796e-01 |
* |
* |
|
| XFG.2 |
500 |
8 |
265.322126 |
260.010745 |
-172.021491 |
2.845335e-08 |
|
* |
|
| XFG.3.1 |
87 |
8 |
248.559265 |
243.278084 |
-138.556168 |
1.543074e-15 |
|
* |
|
| XFG.1 |
14 |
8 |
232.633263 |
227.352082 |
-106.704165 |
1.862411e-22 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
204.917733 |
192.978160 |
-37.956320 |
2.204826e-37 |
|
|
|
| LF.7.1 |
165 |
16 |
185.740514 |
173.861961 |
0.276079 |
1.095630e-45 |
|
|
|
| LF.7.7.1 |
188 |
12 |
182.783973 |
166.919941 |
14.160117 |
1.060865e-48 |
|
|
|
| LF.7.1.2 |
26 |
16 |
181.575508 |
169.673523 |
8.652954 |
1.667790e-47 |
|
|
|
| LF.7.1.5 |
40 |
16 |
171.940084 |
160.116541 |
27.766919 |
1.175672e-51 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250715_81G02/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: LF.7 + KP.3.1.5 + LF.7 | BC BR: 4-5, 7-8 | BC BR coord: 2487 - 2488, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-153 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.72e-02 | |
| Rec. model vs L1: 5.52e-09 | Rec. model vs L2: 2.84e-220 | |
| Flags: Model_2BP_Best | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
3 |
4.718819 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
5 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
5 |
7.613984 |
7.613984 |
-7.227967 |
1.000000 |
* |
* |
|
| NL.11 |
57 |
5 |
7.208518 |
7.208518 |
-6.417037 |
0.666977 |
* |
* |
|
| XBB.4 |
49 |
4 |
6.609415 |
3.722163 |
0.555673 |
0.020343 |
* |
* |
|
| B.1.1.304 |
143 |
6 |
6.536776 |
-3.463224 |
14.926449 |
0.000015 |
* |
* |
|
| AZ.5 |
21 |
6 |
6.536776 |
-3.463224 |
14.926449 |
0.000015 |
* |
* |
|
| B.1.1.434 |
1274 |
6 |
6.534418 |
-3.465582 |
14.931164 |
0.000015 |
* |
* |
|
| XBB.1.5.92 |
41 |
4 |
6.272764 |
3.900411 |
0.199177 |
0.024355 |
* |
* |
|
| JE.1.1.1 |
46 |
5 |
5.577102 |
5.577102 |
-3.154203 |
0.130029 |
* |
* |
|
| LE.1.2 |
19 |
5 |
5.362692 |
-2.680191 |
13.360383 |
0.000034 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
8 |
282.666982 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
8 |
281.735746 |
276.439919 |
-204.879838 |
3.886796e-01 |
* |
* |
|
| XFG.2 |
500 |
8 |
265.322126 |
260.010745 |
-172.021491 |
2.845335e-08 |
|
* |
|
| XFG.3.1 |
87 |
8 |
248.559265 |
243.278084 |
-138.556168 |
1.543074e-15 |
|
* |
|
| XFG.1 |
14 |
8 |
232.633263 |
227.352082 |
-106.704165 |
1.862411e-22 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
204.917733 |
192.978160 |
-37.956320 |
2.204826e-37 |
|
|
|
| LF.7.1 |
165 |
16 |
185.740514 |
173.861961 |
0.276079 |
1.095630e-45 |
|
|
|
| LF.7.7.1 |
188 |
12 |
182.783973 |
166.919941 |
14.160117 |
1.060865e-48 |
|
|
|
| LF.7.1.2 |
26 |
16 |
181.575508 |
169.673523 |
8.652954 |
1.667790e-47 |
|
|
|
| LF.7.1.5 |
40 |
16 |
171.940084 |
160.116541 |
27.766919 |
1.175672e-51 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250722_81C08/2025
| Target: 530 samples | Number of changes: 157 | |
| BC: KS.1.3 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,9-157 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.02e-222 | Rec. model vs L2: 1.13e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KS.1.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KS.1.3 |
45 |
4 |
10.286720 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1 |
1957 |
8 |
8.879327 |
4.771811 |
-1.543623 |
0.004026 |
* |
|
|
| KP.3.2.9 |
28 |
4 |
8.768748 |
8.768748 |
-9.537496 |
0.219808 |
* |
* |
|
| LK.2.1 |
10 |
4 |
8.699755 |
8.699755 |
-9.399510 |
0.204948 |
* |
* |
|
| PR.2 |
20 |
4 |
8.648462 |
8.648462 |
-9.296923 |
0.194952 |
* |
* |
|
| KR.1.1 |
33 |
4 |
8.541924 |
8.541924 |
-9.083849 |
0.174645 |
* |
* |
|
| JN.2.5 |
25 |
4 |
8.435789 |
8.435789 |
-8.871579 |
0.157237 |
* |
* |
|
| KP.2.15 |
253 |
4 |
8.319432 |
8.319432 |
-8.638864 |
0.140156 |
* |
* |
|
| JN.1.16.5 |
24 |
4 |
7.781727 |
7.781727 |
-7.563453 |
0.081676 |
* |
* |
|
| LF.7.3.1 |
26 |
4 |
7.705023 |
7.705023 |
-7.410046 |
0.075774 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
9 |
279.302040 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
9 |
247.105743 |
230.750611 |
-107.501222 |
5.320311e-18 |
|
* |
|
| LF.7 |
58 |
9 |
237.824674 |
218.888377 |
-83.776754 |
3.760144e-23 |
|
* |
|
| XFG.3.1 |
87 |
18 |
218.660957 |
199.640359 |
-45.280718 |
1.640724e-31 |
|
|
|
| XFG.1 |
14 |
18 |
203.954846 |
183.714357 |
-13.428715 |
1.990197e-38 |
|
|
|
| LF.7.1.8 |
44 |
18 |
198.438621 |
162.930832 |
28.138336 |
1.871049e-47 |
|
|
|
| LF.7.7.1 |
188 |
18 |
197.651096 |
159.029161 |
35.941678 |
3.787361e-49 |
|
|
|
| LF.7.1 |
165 |
18 |
180.136870 |
144.651137 |
64.697727 |
2.153685e-55 |
|
|
|
| LF.7.6 |
15 |
18 |
162.806258 |
133.025828 |
87.948344 |
1.925346e-60 |
|
|
|
| LF.7.1.2 |
26 |
18 |
162.320821 |
126.781111 |
100.437778 |
3.735422e-63 |
|
|
|
|
Target sequence
, 241_C|T, 313_C|T, 670_T|G, 897_C|A, 934_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4584_A|G, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T,
8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 15763_C|T, 16376_C|T, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20825_C|T, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22001_A|G, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23601_C|T,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250722_81F09/2025
| Target: 530 samples | Number of changes: 152 | |
| BC: LD.1 + XFG.3 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-152 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.19e-197 | Rec. model vs L2: 1.33e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LD.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LD.1 |
70 |
4 |
9.085704 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
4 |
8.457912 |
8.457912 |
-8.915824 |
0.535261 |
* |
* |
|
| BA.5.1.17 |
357 |
3 |
8.456578 |
-1.543422 |
11.086845 |
0.000024 |
* |
* |
|
| JN.1.29 |
69 |
4 |
7.971640 |
7.971640 |
-7.943281 |
0.327915 |
* |
* |
|
| KP.2 |
1589 |
5 |
7.815486 |
6.243829 |
-4.487657 |
0.058426 |
* |
* |
|
| MC.8 |
93 |
4 |
7.731975 |
7.731975 |
-7.463950 |
0.257947 |
* |
* |
|
| XEC.39 |
155 |
4 |
7.208205 |
7.208205 |
-6.416409 |
0.153355 |
* |
* |
|
| MC.9 |
298 |
4 |
6.547233 |
6.547233 |
-5.094467 |
0.078866 |
* |
* |
|
| MC.2 |
396 |
4 |
6.252566 |
6.252566 |
-4.505133 |
0.059013 |
* |
* |
|
| MC.1 |
932 |
4 |
6.073660 |
6.073660 |
-4.147321 |
0.049292 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
6 |
282.228759 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
6 |
278.888377 |
268.888377 |
-193.776754 |
3.543696e-02 |
* |
* |
|
| XFG.2 |
500 |
6 |
267.620087 |
259.918994 |
-175.837988 |
4.506454e-06 |
|
* |
|
| XFG.3.1 |
87 |
6 |
259.640359 |
249.640359 |
-155.280718 |
1.546278e-10 |
|
* |
|
| XFG.1 |
14 |
6 |
243.714357 |
233.714357 |
-123.428715 |
1.875634e-17 |
|
* |
|
| LF.7.7.1 |
188 |
14 |
201.719025 |
173.341668 |
-2.683335 |
1.128804e-43 |
|
|
|
| LF.7.1 |
165 |
14 |
199.808982 |
191.200980 |
-38.401960 |
6.443445e-36 |
|
|
|
| LF.7.1.8 |
44 |
14 |
191.708175 |
172.172322 |
-0.344644 |
3.503436e-44 |
|
|
|
| LF.7.6 |
15 |
14 |
188.460035 |
168.924182 |
6.151636 |
1.365239e-45 |
|
|
|
| LF.7.3 |
54 |
14 |
185.118331 |
165.506628 |
12.986744 |
4.466028e-47 |
|
|
|
|
Target sequence
, 241_C|T, 606_T|C, 670_T|G, 897_C|A, 1288_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4901_C|A, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15327_G|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22567_G|T, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26749_T|C, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28010_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29137_C|T, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250728_81D05/2025
| Target: 530 samples | Number of changes: 154 | |
| BC: XFG.3 + KP.3.1.5 + XFG.3 | BC BR: 3-4, 7-8 | BC BR coord: 896 - 897, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-154 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.82e-02 | |
| Rec. model vs L1: 5.55e-09 | Rec. model vs L2: 3.30e-201 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.704173 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
5 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
5 |
7.613984 |
-2.386016 |
22.772033 |
1.000000e+00 |
* |
* |
|
| NL.11 |
57 |
5 |
7.208518 |
-2.791482 |
23.582963 |
6.669768e-01 |
* |
* |
|
| XBB.4 |
49 |
4 |
6.609415 |
6.609415 |
4.781171 |
8.062670e+03 |
* |
* |
|
| B.1.1.304 |
143 |
6 |
6.536776 |
-19.539319 |
57.078638 |
3.545505e-08 |
|
* |
|
| AZ.5 |
21 |
6 |
6.536776 |
-23.368480 |
64.736960 |
7.697156e-10 |
|
* |
|
| B.1.1.434 |
1274 |
6 |
6.534418 |
-27.588067 |
73.176135 |
1.131378e-11 |
|
* |
|
| XBB.1.5.92 |
41 |
4 |
6.272764 |
6.272764 |
5.454472 |
5.767535e+03 |
* |
* |
|
| JE.1.1.1 |
46 |
5 |
5.577102 |
-11.675249 |
41.350497 |
9.234306e-05 |
* |
* |
|
| LE.1.2 |
19 |
5 |
5.362692 |
-12.680191 |
43.360383 |
3.380168e-05 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
232.800723 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
8 |
219.299864 |
224.018683 |
-86.037366 |
1.391678e-06 |
|
* |
|
| XFG.2 |
500 |
8 |
206.201918 |
210.890537 |
-59.781074 |
2.762182e-12 |
|
* |
|
| XFG.3.1 |
87 |
8 |
204.183727 |
208.902547 |
-55.805093 |
3.794703e-13 |
|
* |
|
| XFG.1 |
14 |
8 |
142.417961 |
147.136780 |
67.726439 |
5.659886e-40 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
140.641999 |
138.702426 |
84.595149 |
1.228949e-43 |
|
|
|
| LF.7.1 |
165 |
16 |
123.055570 |
121.177017 |
119.645967 |
3.009698e-51 |
|
|
|
| LF.7.7.1 |
188 |
34 |
121.195120 |
114.689494 |
132.621012 |
4.593283e-54 |
|
|
|
| LF.7.3.1 |
26 |
16 |
113.050269 |
115.717675 |
130.564651 |
1.286609e-53 |
|
|
|
| LF.7.1.5 |
40 |
54 |
111.611145 |
79.901239 |
202.197523 |
3.572878e-69 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9598_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12754_C|T, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16064_A|G, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21610_T|C, 21641_G|T,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24769_T|C, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250728_81H09/2025
| Target: 530 samples | Number of changes: 148 | |
| BC: XFG.3 + XBB.1.42.1 + XFG.3 | BC BR: 135-136, 140-141 | BC BR coord: 27808 - 27809, 28361 - 28362 |
| Direction L1: >> | Initial region span: 1-135,137-140,141-148 | Gap history (edge excluded): 135-141 -> 135-137 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.00e-06 | |
| Rec. model vs L1: 1.26e-07 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
135 |
265.894236 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
135 |
252.901546 |
264.770108 |
-189.540216 |
2.155657e-07 |
|
* |
|
| XFG.3.1 |
87 |
135 |
251.650859 |
265.211030 |
-190.422060 |
3.347105e-07 |
|
* |
|
| XFG.2 |
500 |
135 |
249.547299 |
263.886110 |
-187.772220 |
8.896703e-08 |
|
* |
|
| LF.7.1.8 |
44 |
135 |
194.127090 |
192.391476 |
-44.782951 |
7.931313e-39 |
|
* |
|
| XFG.1 |
14 |
135 |
174.651239 |
189.115097 |
-38.230193 |
2.999374e-40 |
|
* |
|
| LF.7.1 |
165 |
135 |
163.846563 |
173.779337 |
-7.558674 |
6.563338e-47 |
|
* |
|
| LF.7.7.1 |
188 |
147 |
161.559857 |
164.299140 |
11.401720 |
5.012024e-51 |
|
|
|
| LF.7.3.1 |
26 |
135 |
159.503538 |
157.695991 |
24.608018 |
6.784191e-54 |
|
* |
|
| LF.7.3 |
54 |
135 |
149.789073 |
148.170299 |
43.659403 |
4.952712e-58 |
|
* |
|
| |||||
XBB.1.42.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XBB.1.42.1 |
91 |
137 |
10.168975 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.6.1 |
26 |
137 |
10.035444 |
-13.338585 |
42.677171 |
0.000035 |
* |
* |
|
| FL.1.3 |
49 |
137 |
9.401720 |
-3.850097 |
23.700193 |
0.458406 |
* |
* |
|
| LF.7.7.1 |
188 |
137 |
8.057099 |
-5.557252 |
27.114504 |
0.083326 |
* |
* |
|
| FL.15.1.1 |
198 |
137 |
8.005274 |
-5.246543 |
26.493087 |
0.113608 |
* |
* |
|
| HF.1.1 |
292 |
137 |
7.616787 |
-5.635030 |
27.270060 |
0.076919 |
* |
* |
|
| EG.5.2 |
295 |
137 |
7.606565 |
-5.645252 |
27.290503 |
0.076154 |
* |
* |
|
| NB.1.8.1 |
357 |
137 |
7.415805 |
-6.198546 |
28.397091 |
0.043718 |
* |
* |
|
| EG.6.1 |
838 |
137 |
7.255670 |
-5.993758 |
27.987515 |
0.053665 |
* |
* |
|
| XBB.1.9.1 |
1695 |
137 |
7.235525 |
-6.012746 |
28.025492 |
0.052602 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
141 |
14.226904 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2698_T|C, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10744_T|C, 11042_G|T, 11288_11296, 11727_G|A, 12459_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21610_T|C, 21641_G|T, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23487_T|G, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|A, 28271_A|T, 28297_T|C,
28311_C|T, 28340_T|C, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250728_82B06/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: XFG.3 + KP.3.1.5 + XFG.3 | BC BR: 3-4, 7-8 | BC BR coord: 896 - 897, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-153 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.82e-02 | |
| Rec. model vs L1: 5.55e-09 | Rec. model vs L2: 3.30e-201 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.704173 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
5 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
5 |
7.613984 |
-2.386016 |
22.772033 |
1.000000e+00 |
* |
* |
|
| NL.11 |
57 |
5 |
7.208518 |
-2.791482 |
23.582963 |
6.669768e-01 |
* |
* |
|
| XBB.4 |
49 |
4 |
6.609415 |
6.609415 |
4.781171 |
8.062670e+03 |
* |
* |
|
| B.1.1.304 |
143 |
6 |
6.536776 |
-19.539319 |
57.078638 |
3.545505e-08 |
|
* |
|
| AZ.5 |
21 |
6 |
6.536776 |
-23.368480 |
64.736960 |
7.697156e-10 |
|
* |
|
| B.1.1.434 |
1274 |
6 |
6.534418 |
-27.588067 |
73.176135 |
1.131378e-11 |
|
* |
|
| XBB.1.5.92 |
41 |
4 |
6.272764 |
6.272764 |
5.454472 |
5.767535e+03 |
* |
* |
|
| JE.1.1.1 |
46 |
5 |
5.577102 |
-11.675249 |
41.350497 |
9.234306e-05 |
* |
* |
|
| LE.1.2 |
19 |
5 |
5.362692 |
-12.680191 |
43.360383 |
3.380168e-05 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
242.800723 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
8 |
229.299864 |
234.018683 |
-106.037366 |
1.391678e-06 |
|
* |
|
| XFG.2 |
500 |
8 |
216.201918 |
220.890537 |
-79.781074 |
2.762182e-12 |
|
* |
|
| XFG.3.1 |
87 |
8 |
214.183727 |
218.902547 |
-75.805093 |
3.794703e-13 |
|
* |
|
| XFG.1 |
14 |
8 |
152.417961 |
157.136780 |
47.726439 |
5.659886e-40 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
150.641999 |
148.702426 |
64.595149 |
1.228949e-43 |
|
|
|
| LF.7.1 |
165 |
16 |
133.055570 |
131.177017 |
99.645967 |
3.009698e-51 |
|
|
|
| LF.7.7.1 |
188 |
34 |
131.195120 |
124.689494 |
112.621012 |
4.593283e-54 |
|
|
|
| LF.7.3.1 |
26 |
16 |
123.050269 |
125.717675 |
110.564651 |
1.286609e-53 |
|
|
|
| LF.7.7.2 |
239 |
12 |
114.883598 |
109.063369 |
143.873263 |
7.520937e-61 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9598_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12754_C|T, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21610_T|C, 21641_G|T, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28857_G|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250728_82C09/2025
| Target: 530 samples | Number of changes: 150 | |
| BC: XFG.3 + KP.3.1.5 + XFG.3 | BC BR: 3-4, 7-8 | BC BR coord: 896 - 897, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-150 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.82e-02 | |
| Rec. model vs L1: 5.55e-09 | Rec. model vs L2: 3.33e-195 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.704173 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
5 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
5 |
7.613984 |
-2.386016 |
22.772033 |
1.000000e+00 |
* |
* |
|
| NL.11 |
57 |
5 |
7.208518 |
-2.791482 |
23.582963 |
6.669768e-01 |
* |
* |
|
| XBB.4 |
49 |
4 |
6.609415 |
6.609415 |
4.781171 |
8.062670e+03 |
* |
* |
|
| B.1.1.304 |
143 |
6 |
6.536776 |
-19.539319 |
57.078638 |
3.545505e-08 |
|
* |
|
| AZ.5 |
21 |
6 |
6.536776 |
-23.368480 |
64.736960 |
7.697156e-10 |
|
* |
|
| B.1.1.434 |
1274 |
6 |
6.534418 |
-27.588067 |
73.176135 |
1.131378e-11 |
|
* |
|
| XBB.1.5.92 |
41 |
4 |
6.272764 |
6.272764 |
5.454472 |
5.767535e+03 |
* |
* |
|
| JE.1.1.1 |
46 |
5 |
5.577102 |
-11.675249 |
41.350497 |
9.234306e-05 |
* |
* |
|
| LE.1.2 |
19 |
5 |
5.362692 |
-12.680191 |
43.360383 |
3.380168e-05 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
261.813302 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
8 |
259.299864 |
264.018683 |
-172.037366 |
8.249645e-02 |
* |
* |
|
| XFG.2 |
500 |
8 |
246.201918 |
250.890537 |
-145.781074 |
1.637377e-07 |
|
* |
|
| XFG.3.1 |
87 |
8 |
244.183727 |
248.902547 |
-141.805093 |
2.249439e-08 |
|
* |
|
| XFG.1 |
14 |
8 |
182.417961 |
187.136780 |
-18.273561 |
3.355089e-35 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
180.641999 |
178.702426 |
-1.404851 |
7.285009e-39 |
|
|
|
| LF.7.1 |
165 |
16 |
163.055570 |
161.177017 |
33.645967 |
1.784100e-46 |
|
|
|
| LF.7.7.1 |
188 |
12 |
160.553525 |
154.689494 |
46.621012 |
2.722824e-49 |
|
|
|
| LF.7.3.1 |
26 |
16 |
153.050269 |
155.717675 |
44.564651 |
7.626809e-49 |
|
|
|
| LF.7.7.2 |
239 |
12 |
144.883598 |
139.063369 |
77.873263 |
4.458290e-56 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21610_T|C, 21641_G|T, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C,
23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T,
27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/NY-PRL-250728_82D06/2025
| Target: 530 samples | Number of changes: 149 | |
| BC: XFG.3 + XDD.1.1 + XFG.3 | BC BR: 136-137, 142-143 | BC BR coord: 27915 - 27916, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-136,138-142,143-149 | Gap history (edge excluded): 136-143 -> 136-138 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.15e-07 | |
| Rec. model vs L1: 1.58e-07 | Rec. model vs L2: 5.93e-323 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
136 |
258.237613 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
136 |
256.515897 |
267.640847 |
-195.281693 |
1.592285e-02 |
* |
* |
|
| XFG.2 |
500 |
136 |
253.161649 |
266.725765 |
-193.451530 |
6.377367e-03 |
* |
* |
|
| XFG.3.1 |
87 |
136 |
240.935043 |
253.891959 |
-167.783917 |
1.700089e-08 |
|
* |
|
| XFG.1 |
14 |
136 |
178.265589 |
191.950744 |
-43.901488 |
2.139299e-35 |
|
* |
|
| LF.7.1.8 |
44 |
136 |
170.738844 |
168.224526 |
3.550948 |
1.063249e-45 |
|
* |
|
| LF.7.1 |
165 |
136 |
167.460914 |
176.639525 |
-13.279050 |
4.799798e-42 |
|
* |
|
| LF.7.3.1 |
26 |
136 |
163.117889 |
160.654240 |
18.691519 |
5.483094e-49 |
|
* |
|
| LF.7.7.1 |
188 |
136 |
162.823905 |
167.134787 |
5.730425 |
3.574818e-46 |
|
* |
|
| LF.7.3 |
54 |
136 |
153.403424 |
151.024638 |
37.950724 |
3.603876e-53 |
|
* |
|
| |||||
XDD.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XDD.1.1 |
29 |
138 |
13.385163 |
NaN |
NaN |
NaN |
* |
* |
* |
| JG.3 |
1482 |
138 |
10.138247 |
0.138247 |
17.723506 |
3.896856e-02 |
* |
* |
|
| HK.3 |
1830 |
138 |
9.256169 |
-0.743831 |
19.487662 |
1.608288e-02 |
* |
* |
|
| JN.1.3 |
111 |
140 |
8.464940 |
-16.336019 |
50.672039 |
2.727174e-09 |
|
|
|
| XBB.1.5.43 |
48 |
140 |
8.201786 |
-11.033084 |
40.066167 |
5.463533e-07 |
|
|
|
| GK.2.1 |
255 |
138 |
7.855661 |
-8.235089 |
34.470179 |
8.984587e-06 |
|
* |
|
| BW.1 |
131 |
140 |
7.218843 |
-12.016026 |
42.032053 |
2.050525e-07 |
|
|
|
| XBB.1.16.6 |
4784 |
137 |
6.553074 |
6.553074 |
4.893853 |
2.380748e+01 |
* |
* |
|
| BA.2.76 |
427 |
140 |
6.030217 |
-13.204653 |
44.409305 |
6.238132e-08 |
|
|
|
| BA.2.36 |
3016 |
140 |
5.869129 |
-13.366736 |
44.733472 |
5.315785e-08 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
143 |
13.542054 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 4822_A|G, 5239_C|T, 6183_A|G, 6351_A|G, 6777_A|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9989_A|G, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 16986_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21610_T|C, 21641_G|T, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28268_A|C,
28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28467_A|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/OSPHL10334/2025
| Target: 530 samples | Number of changes: 148 | |
| BC: EG.5.1.16 + XFG.3 | BC BR: 5-6 | BC BR coord: 2512 - 2513 |
| Direction L1: << | Initial region span: 1-5,6-148 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 9.53e-23 | |
| Flags: Model_2BP_Bad_L1_opp | | |
EG.5.1.16 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| EG.5.1.16 |
519 |
5 |
6.229741 |
NaN |
NaN |
NaN |
* |
* |
* |
| EG.5.2 |
295 |
5 |
6.214795 |
6.214795 |
5.570409 |
9.851119e-01 |
* |
* |
|
| HK.27.1 |
107 |
4 |
5.873577 |
-4.126423 |
26.252847 |
3.183323e-05 |
* |
* |
|
| JN.11 |
67 |
3 |
5.085550 |
-18.541804 |
55.083609 |
1.747937e-11 |
|
|
|
| KP.2.3.10 |
10 |
3 |
4.790433 |
-18.836921 |
55.673843 |
1.301394e-11 |
|
|
|
| HK.29 |
238 |
4 |
4.691106 |
-5.308894 |
28.617788 |
9.732887e-06 |
|
* |
|
| DN.3 |
10 |
3 |
4.685073 |
-18.767248 |
55.534496 |
1.395756e-11 |
|
|
|
| BF.5.5 |
91 |
3 |
4.661600 |
-18.338270 |
54.676541 |
2.134935e-11 |
|
|
|
| PL.1.1 |
12 |
3 |
4.608112 |
-19.019243 |
56.038486 |
1.081594e-11 |
|
|
|
| BN.1.1.1 |
41 |
3 |
4.453366 |
-15.546634 |
49.093268 |
3.493314e-10 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
6 |
333.613273 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
6 |
333.571870 |
333.571870 |
-335.143740 |
9.559975e-01 |
* |
* |
|
| XFG.2 |
500 |
5 |
329.187907 |
328.801106 |
-325.602212 |
8.107222e-03 |
* |
* |
|
| XFG.3.1 |
87 |
6 |
301.566276 |
301.566276 |
-271.132551 |
1.204653e-14 |
|
* |
|
| XFG.1 |
14 |
6 |
284.571728 |
284.571728 |
-237.143455 |
5.012185e-22 |
|
* |
|
| LF.7.1 |
165 |
12 |
242.566038 |
241.941555 |
-151.883111 |
1.534806e-40 |
|
|
|
| LF.7.7.1 |
188 |
12 |
238.986556 |
229.544250 |
-127.088501 |
6.352918e-46 |
|
|
|
| LF.7.1.8 |
44 |
12 |
235.721266 |
235.115133 |
-138.230265 |
1.667222e-43 |
|
|
|
| LF.7.6 |
15 |
12 |
220.487112 |
219.880978 |
-107.761956 |
4.031968e-50 |
|
|
|
| LF.7.3 |
54 |
12 |
217.040048 |
216.358064 |
-100.716127 |
1.193440e-51 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 2334_C|T, 2509_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C
Case 58 (XFG): USA/NY-PRL-250715_81G02/2025
| Target: 530 samples | Number of changes: 153 | |
| BC: LF.7 + KP.3.1.5 + LF.7 | BC BR: 4-5, 7-8 | BC BR coord: 2487 - 2488, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-153 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.72e-02 | |
| Rec. model vs L1: 5.52e-09 | Rec. model vs L2: 2.84e-220 | |
| Flags: Model_2BP_Best | | |
LF.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
3 |
4.718819 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.1.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.5 |
45 |
5 |
7.613984 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
5 |
7.613984 |
7.613984 |
-7.227967 |
1.000000 |
* |
* |
|
| NL.11 |
57 |
5 |
7.208518 |
7.208518 |
-6.417037 |
0.666977 |
* |
* |
|
| XBB.4 |
49 |
4 |
6.609415 |
3.722163 |
0.555673 |
0.020343 |
* |
* |
|
| B.1.1.304 |
143 |
6 |
6.536776 |
-3.463224 |
14.926449 |
0.000015 |
* |
* |
|
| AZ.5 |
21 |
6 |
6.536776 |
-3.463224 |
14.926449 |
0.000015 |
* |
* |
|
| B.1.1.434 |
1274 |
6 |
6.534418 |
-3.465582 |
14.931164 |
0.000015 |
* |
* |
|
| XBB.1.5.92 |
41 |
4 |
6.272764 |
3.900411 |
0.199177 |
0.024355 |
* |
* |
|
| JE.1.1.1 |
46 |
5 |
5.577102 |
5.577102 |
-3.154203 |
0.130029 |
* |
* |
|
| LE.1.2 |
19 |
5 |
5.362692 |
-2.680191 |
13.360383 |
0.000034 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
8 |
282.666982 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
8 |
281.735746 |
276.439919 |
-204.879838 |
3.886796e-01 |
* |
* |
|
| XFG.2 |
500 |
8 |
265.322126 |
260.010745 |
-172.021491 |
2.845335e-08 |
|
* |
|
| XFG.3.1 |
87 |
8 |
248.559265 |
243.278084 |
-138.556168 |
1.543074e-15 |
|
* |
|
| XFG.1 |
14 |
8 |
232.633263 |
227.352082 |
-106.704165 |
1.862411e-22 |
|
* |
|
| LF.7.1.8 |
44 |
16 |
204.917733 |
192.978160 |
-37.956320 |
2.204826e-37 |
|
|
|
| LF.7.1 |
165 |
16 |
185.740514 |
173.861961 |
0.276079 |
1.095630e-45 |
|
|
|
| LF.7.7.1 |
188 |
12 |
182.783973 |
166.919941 |
14.160117 |
1.060865e-48 |
|
|
|
| LF.7.1.2 |
26 |
16 |
181.575508 |
169.673523 |
8.652954 |
1.667790e-47 |
|
|
|
| LF.7.1.5 |
40 |
16 |
171.940084 |
160.116541 |
27.766919 |
1.175672e-51 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6539_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17007_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19593_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23148_A|C, 23222_G|A, 23271_C|T, 23277_C|T, 23373_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25352_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27754_G|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): USA/VT-25-006305-WGS-01/2025
| Target: 530 samples | Number of changes: 148 | |
| BC: MC.20 + XFG.3 | BC BR: 3-4 | BC BR coord: 865 - 866 |
| Direction L1: << | Initial region span: 1-3,4-148 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.28e-230 | Rec. model vs L2: 5.60e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
MC.20 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.20 |
14 |
3 |
8.387412 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.5.2.28 |
894 |
3 |
6.014678 |
6.014678 |
-4.029355 |
0.093481 |
* |
* |
|
| CQ.2 |
434 |
3 |
5.942716 |
5.942716 |
-3.885432 |
0.087161 |
* |
* |
|
| BA.5.2.12 |
97 |
3 |
5.758611 |
5.758611 |
-3.517223 |
0.072440 |
* |
* |
|
| XEC.2.1 |
265 |
3 |
5.572695 |
5.572695 |
-3.145391 |
0.060205 |
* |
* |
|
| PA.1.3 |
18 |
3 |
5.497040 |
5.497040 |
-2.994081 |
0.055576 |
* |
* |
|
| GK.1.6 |
51 |
3 |
5.192024 |
5.192024 |
-2.384049 |
0.040967 |
* |
* |
|
| JN.1.37 |
26 |
3 |
5.129316 |
5.129316 |
-2.258631 |
0.038581 |
* |
* |
|
| HK.3.2 |
356 |
3 |
5.118018 |
5.118018 |
-2.236036 |
0.038197 |
* |
* |
|
| MS.1 |
34 |
3 |
4.861052 |
4.861052 |
-1.722103 |
0.029452 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
4 |
280.901341 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
4 |
280.213079 |
280.213079 |
-218.426158 |
5.040902e-01 |
* |
* |
|
| XFG.2 |
500 |
16 |
275.212650 |
269.131672 |
-196.263343 |
7.733106e-06 |
|
|
|
| XFG.3.1 |
87 |
4 |
247.532327 |
247.532327 |
-153.064655 |
3.218053e-15 |
|
* |
|
| XFG.1 |
14 |
16 |
232.793190 |
231.282640 |
-120.565280 |
2.834518e-22 |
|
|
|
| LF.7.1.8 |
44 |
18 |
218.942307 |
195.673532 |
-49.347064 |
9.710750e-38 |
|
|
|
| LF.7.1 |
165 |
18 |
211.647267 |
188.471569 |
-34.943139 |
7.213749e-41 |
|
|
|
| LF.7.7.1 |
188 |
28 |
199.925659 |
170.882672 |
0.234656 |
1.663767e-48 |
|
|
|
| LF.7.6 |
15 |
10 |
184.993709 |
180.691948 |
-19.383895 |
3.015435e-44 |
|
|
|
| LF.7.1.2 |
26 |
18 |
182.863442 |
159.648486 |
22.703028 |
2.196818e-53 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 853_C|T, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6543_C|T, 7869_C|T, 8152_C|T, 8293_C|T, 8350_T|C, 8393_G|A, 8818_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10039_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15381_C|A, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25244_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): IGS-10285-CVDP-0E8038B3-F107-4098-A428-711708784AC4
| Target: 530 samples | Number of changes: 151 | |
| BC: XFG.2 + KP.3.1.1 | BC BR: 142-143 | BC BR coord: 28361 - 28362 |
| Direction L1: >> | Initial region span: 1-142,144-151 | Gap history (edge excluded): 142-144 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.73e-06 | Rec. model vs L2: 1.30e-141 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XFG.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.2 |
500 |
142 |
311.047405 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
142 |
309.587062 |
309.587062 |
-295.174125 |
2.322363e-01 |
* |
* |
|
| XFG.3 |
480 |
148 |
308.417909 |
307.128912 |
-290.257824 |
1.994055e-02 |
* |
|
|
| XFG.3.1 |
87 |
148 |
275.208799 |
273.919801 |
-223.839603 |
7.530388e-17 |
|
|
|
| XFG.1 |
14 |
148 |
259.534111 |
258.245114 |
-192.490229 |
1.172874e-23 |
|
|
|
| LF.7.1.8 |
44 |
142 |
224.571938 |
224.571938 |
-125.143877 |
2.782176e-38 |
|
* |
|
| LF.7.1 |
165 |
142 |
219.939926 |
219.939926 |
-115.879851 |
2.713946e-40 |
|
* |
|
| LF.7.6 |
15 |
142 |
216.244100 |
216.244100 |
-108.488200 |
6.743465e-42 |
|
* |
|
| LF.7.7.1 |
188 |
142 |
214.706097 |
214.706097 |
-105.412194 |
1.445671e-42 |
|
* |
|
| LF.7.3 |
54 |
142 |
206.001218 |
206.001218 |
-88.002436 |
2.396272e-46 |
|
* |
|
| |||||
KP.3.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
144 |
9.673219 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.1.18.1 |
84 |
149 |
9.477560 |
-18.867943 |
65.735886 |
8.830979e-09 |
|
|
|
| JN.1.46 |
308 |
149 |
7.040837 |
-7.696366 |
43.392731 |
6.298682e-04 |
* |
|
|
| BQ.1.1.13 |
384 |
149 |
6.727103 |
-25.186222 |
78.372445 |
1.597494e-11 |
|
|
|
| DV.6 |
1051 |
149 |
5.873972 |
-22.486817 |
72.973635 |
2.377028e-10 |
|
|
|
| JF.1.1 |
935 |
149 |
5.815039 |
-23.857788 |
75.715577 |
6.010068e-11 |
|
|
|
| BF.5 |
7920 |
149 |
4.715060 |
-22.241819 |
72.483639 |
3.036942e-10 |
|
|
|
| BF.7 |
11554 |
149 |
4.391464 |
-18.808267 |
65.616534 |
9.377056e-09 |
|
|
|
| BA.2.9 |
75328 |
149 |
4.282623 |
-5.604268 |
39.208536 |
5.092431e-03 |
* |
|
|
| NL.14 |
12 |
144 |
3.685154 |
-6.314846 |
40.629691 |
2.503664e-03 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3912_C|A, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 5907_C|T, 6183_A|G, 7279_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28467_A|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29436_A|G, 29510_A|C, 29734_29759
Case 58 (XFG): IGS-10285-CVDP-34E9F1FA-26B3-4AD3-BB29-6A6F16FA356F
| Target: 530 samples | Number of changes: 153 | |
| BC: XFG.3 + BY.1 + XFG.3 | BC BR: 3-4, 6-7 | BC BR coord: 896 - 897, 2909 - 2910 |
| Direction L1: << | Initial region span: 1-3,4-6,7-153 | Gap history (edge excluded): 3-7 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.57e-07 | |
| Rec. model vs L1: 5.75e-15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.704173 |
None |
None |
None |
* |
* |
* |
| |||||
BY.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BY.1 |
185 |
6 |
9.220286 |
NaN |
NaN |
NaN |
* |
* |
* |
| EG.6.1.1 |
59 |
5 |
6.002246 |
-3.997754 |
17.995507 |
1.813957e-06 |
|
* |
|
| EG.6.1 |
838 |
5 |
5.981751 |
-4.018249 |
18.036497 |
1.778038e-06 |
|
* |
|
| BA.4.5 |
49 |
5 |
5.981627 |
-4.018373 |
18.036746 |
1.778038e-06 |
|
* |
|
| XFG.1 |
14 |
5 |
4.972627 |
-5.027373 |
20.054746 |
6.508413e-07 |
|
* |
|
| XCT.1 |
42 |
4 |
4.925038 |
-15.259019 |
40.518038 |
2.335991e-11 |
|
|
|
| JG.4 |
61 |
4 |
4.925038 |
-15.225683 |
40.451365 |
2.419198e-11 |
|
|
|
| B.1.258.16 |
10 |
4 |
4.925038 |
-15.074962 |
40.149923 |
2.810707e-11 |
|
|
|
| AY.47 |
22935 |
4 |
4.917818 |
-15.082182 |
40.164364 |
2.796688e-11 |
|
|
|
| XDK.1 |
127 |
5 |
4.745072 |
-5.254928 |
20.509857 |
5.171153e-07 |
|
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
283.957599 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
7 |
281.317960 |
286.036780 |
-224.073559 |
7.243976e-02 |
* |
* |
|
| XFG.2 |
500 |
7 |
280.041205 |
284.729825 |
-221.459650 |
1.964367e-02 |
* |
* |
|
| XFG.1 |
14 |
7 |
272.328306 |
277.047125 |
-206.094250 |
9.029622e-06 |
|
* |
|
| XFG.3.1 |
87 |
7 |
261.080690 |
265.799509 |
-183.599019 |
1.180397e-10 |
|
* |
|
| LF.7.7.1 |
188 |
12 |
196.168587 |
190.308442 |
-32.616884 |
1.937036e-43 |
|
|
|
| LF.7.1 |
165 |
12 |
194.430741 |
197.417325 |
-46.834650 |
2.359391e-40 |
|
|
|
| LF.7.1.8 |
44 |
12 |
186.068685 |
189.034653 |
-30.069306 |
5.412679e-44 |
|
|
|
| LF.7.6 |
15 |
12 |
182.840632 |
185.876110 |
-23.752219 |
2.296369e-45 |
|
|
|
| LF.7.7.2 |
239 |
12 |
180.400510 |
174.584167 |
-1.168335 |
2.869835e-50 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1684_C|T, 2790_C|T, 2904_T|C, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C, 8393_G|A,
8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10868_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
13402_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16224_T|C, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20134_G|T, 20970_C|A, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T,
22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A,
23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 26951_G|C,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): IGS-10285-CVDP-6445BD5D-CEF7-4760-9DC3-A57A77560482
| Target: 530 samples | Number of changes: 155 | |
| BC: XFG.3 + CV.1 + XFG.3 | BC BR: 3-4, 7-8 | BC BR coord: 2474 - 2475, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-7,8-155 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.21e-02 | |
| Rec. model vs L1: 5.55e-09 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
3 |
4.704173 |
None |
None |
None |
* |
* |
* |
| |||||
CV.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| CV.1 |
86 |
5 |
9.239404 |
NaN |
NaN |
NaN |
* |
* |
* |
| BM.1.1.3 |
341 |
5 |
9.230568 |
-0.769432 |
11.538865 |
0.990050 |
* |
* |
|
| BM.1.1.4 |
18 |
5 |
9.182246 |
-0.817754 |
11.635508 |
0.941765 |
* |
* |
|
| NL.4 |
115 |
4 |
9.133467 |
9.133467 |
-8.266935 |
19830.967301 |
* |
* |
|
| FL.29 |
37 |
5 |
7.014781 |
-2.985219 |
15.970439 |
0.108067 |
* |
* |
|
| BA.5.6.1 |
96 |
5 |
6.977641 |
-3.022359 |
16.044718 |
0.104350 |
* |
* |
|
| FY.5.2 |
12 |
5 |
6.754498 |
-3.245502 |
16.491005 |
0.083326 |
* |
* |
|
| NA.1 |
15 |
5 |
6.531354 |
-3.468646 |
16.937292 |
0.066537 |
* |
* |
|
| BQ.1.31 |
78 |
6 |
6.108072 |
-6.420323 |
22.840646 |
0.003483 |
* |
* |
|
| EG.5.1.6 |
1581 |
5 |
6.047979 |
-3.952021 |
17.904043 |
0.041172 |
* |
* |
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
281.941538 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.2 |
500 |
8 |
262.481232 |
267.169851 |
-186.339703 |
3.484295e-09 |
|
* |
|
| LF.7 |
58 |
8 |
261.314074 |
266.032894 |
-184.065787 |
1.119930e-09 |
|
* |
|
| XFG.3.1 |
87 |
17 |
241.178496 |
245.795623 |
-143.591247 |
1.815810e-18 |
|
|
|
| XFG.1 |
14 |
17 |
227.451939 |
230.849175 |
-113.698349 |
5.868666e-25 |
|
|
|
| LF.7.1 |
165 |
17 |
189.291992 |
177.413439 |
-6.826878 |
3.647655e-48 |
|
|
|
| LF.7.7.1 |
188 |
17 |
185.348216 |
170.304556 |
7.390889 |
2.979751e-51 |
|
|
|
| LF.7.1.8 |
44 |
16 |
182.266109 |
180.326536 |
-12.653071 |
6.695927e-47 |
|
|
|
| LF.7.6 |
15 |
17 |
172.014928 |
165.872223 |
16.255553 |
3.532514e-53 |
|
|
|
| LF.7.1.2 |
26 |
17 |
171.151893 |
159.249908 |
29.500184 |
4.710364e-56 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2675_C|T, 2790_C|T, 3037_C|T, 3130_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 6964_T|C, 7113_C|T, 7842_A|G, 7869_C|T, 8293_C|T,
8350_T|C, 8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14183_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18252_C|T, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22419_C|T, 22468_G|T, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22792_C|T, 22813_G|T, 22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28406_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C,
29555_C|T, 29734_29759
Case 58 (XFG): IGS-10285-CVDP-AECC2415-2C37-4298-B483-C570A97B84D9
| Target: 530 samples | Number of changes: 152 | |
| BC: JN.11 + LF.7 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-152 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.94e-228 | Rec. model vs L2: 4.16e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.11 |
67 |
4 |
8.712905 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.10 |
10 |
4 |
8.417788 |
8.417788 |
-8.835576 |
0.744532 |
* |
* |
|
| PL.1.1 |
12 |
4 |
8.235466 |
8.235466 |
-8.470933 |
0.618783 |
* |
* |
|
| PD.2 |
21 |
4 |
7.675851 |
7.675851 |
-7.351701 |
0.353455 |
* |
* |
|
| KP.4.2.4 |
22 |
4 |
7.629331 |
7.629331 |
-7.258661 |
0.337902 |
* |
* |
|
| KR.1.4 |
24 |
4 |
7.408788 |
7.408788 |
-6.817576 |
0.271173 |
* |
* |
|
| KP.3.1.2 |
28 |
4 |
7.277693 |
7.277693 |
-6.555386 |
0.238115 |
* |
* |
|
| JN.1.69 |
32 |
4 |
7.254637 |
7.254637 |
-6.509274 |
0.232236 |
* |
* |
|
| JN.1.50.2 |
33 |
4 |
7.162322 |
7.162322 |
-6.324644 |
0.211189 |
* |
* |
|
| LP.8.1.10 |
32 |
4 |
7.156197 |
7.156197 |
-6.312394 |
0.210136 |
* |
* |
|
| |||||
LF.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7 |
58 |
6 |
305.993193 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFG.3 |
480 |
6 |
305.966793 |
295.966793 |
-249.933586 |
9.704455e-01 |
* |
* |
|
| XFG.2 |
500 |
6 |
301.198751 |
283.660121 |
-225.320242 |
4.395189e-06 |
|
* |
|
| XFG.3.1 |
87 |
6 |
272.157898 |
262.157898 |
-182.315796 |
2.021372e-15 |
|
* |
|
| XFG.1 |
14 |
6 |
257.211449 |
247.211449 |
-152.422899 |
6.500454e-22 |
|
* |
|
| LF.7.1 |
165 |
16 |
219.915996 |
204.430262 |
-66.860524 |
1.713270e-40 |
|
|
|
| LF.7.1.8 |
44 |
16 |
212.916100 |
197.408311 |
-52.816622 |
1.531364e-43 |
|
|
|
| LF.7.7.1 |
188 |
12 |
206.168587 |
186.726282 |
-31.452563 |
3.504628e-48 |
|
|
|
| LF.7.6 |
15 |
12 |
192.840632 |
182.234498 |
-22.468997 |
3.932419e-50 |
|
|
|
| LF.7.1.2 |
26 |
16 |
191.151893 |
175.612183 |
-9.224366 |
5.217456e-53 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 683_C|T, 897_C|A, 1349_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7390_C|A, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16457_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22286_C|A, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T,
22882_T|G, 22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26149_T|C, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 58 (XFG): IGS-10285-CVDP-C599AD85-A1B5-4508-ABD3-28AF4ABD7F3A
| Target: 530 samples | Number of changes: 150 | |
| BC: LB.1.3.5 + XFG.3 | BC BR: 5-6 | BC BR coord: 2792 - 2793 |
| Direction L1: << | Initial region span: 1-5,7-150 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.12e-172 | Rec. model vs L2: 1.44e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LB.1.3.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LB.1.3.5 |
275 |
5 |
12.164161 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.19 |
221 |
5 |
9.972804 |
9.972804 |
-1.945608 |
1.119167e-01 |
* |
* |
|
| LB.1.7 |
1971 |
6 |
8.001031 |
7.810114 |
2.379772 |
1.284244e-02 |
* |
* |
|
| JN.2 |
574 |
4 |
7.993860 |
0.921611 |
16.156779 |
1.307250e-05 |
* |
* |
|
| DM.1 |
33 |
3 |
7.229608 |
-5.145505 |
28.291011 |
3.036425e-08 |
|
|
|
| BA.2.38.1 |
43 |
3 |
6.941385 |
-1.981407 |
21.962815 |
7.192909e-07 |
|
|
|
| XBB.1.28 |
11 |
3 |
6.519127 |
-2.403665 |
22.807331 |
4.702506e-07 |
|
|
|
| BQ.1.1.23 |
644 |
3 |
5.352364 |
-7.019638 |
32.039276 |
4.656508e-09 |
|
|
|
| BA.5.1.30 |
4775 |
3 |
4.442524 |
-4.481106 |
26.962213 |
5.904299e-08 |
|
|
|
| BA.4.6.5 |
1612 |
3 |
4.029062 |
-8.788269 |
35.576537 |
7.931569e-10 |
|
|
|
| |||||
XFG.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
7 |
296.978611 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7 |
58 |
7 |
296.906879 |
286.906879 |
-235.813758 |
9.277435e-01 |
* |
* |
|
| XFG.2 |
500 |
7 |
291.857845 |
281.857845 |
-225.715690 |
5.976023e-03 |
* |
* |
|
| XFG.3.1 |
87 |
7 |
266.956245 |
256.956245 |
-175.912489 |
9.126582e-14 |
|
* |
|
| XFG.1 |
14 |
7 |
247.918714 |
237.918714 |
-137.837428 |
4.937564e-22 |
|
* |
|
| LF.7.1 |
165 |
16 |
211.677293 |
195.114352 |
-52.228703 |
1.269221e-40 |
|
|
|
| LF.7.1.8 |
44 |
16 |
204.691375 |
188.106379 |
-38.212758 |
1.145864e-43 |
|
|
|
| LF.7.7.1 |
188 |
12 |
197.858755 |
189.880014 |
-41.760027 |
6.760920e-43 |
|
|
|
| LF.7.1.2 |
26 |
3 |
186.521031 |
180.808011 |
-23.616022 |
7.779557e-47 |
|
|
|
| LF.7.6 |
15 |
12 |
184.476889 |
172.793547 |
-7.587094 |
2.570896e-50 |
|
|
|
|
Target sequence
, 241_C|T, 514_T|C, 670_T|G, 897_C|A, 2790_C|T, 2857_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4214_T|C, 4321_C|T, 5239_C|T, 6183_A|G, 7760_G|A, 7842_A|G, 7869_C|T, 8293_C|T, 8350_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10369_C|G, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12865_T|C, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G,
22893_A|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23006_23008, 23012_G|A, 23018_T|C, 23019_T|C,
23021_A|G, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T,
24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29409_C|T, 29510_A|C, 29734_29759
Case 63 (XEK): OZ255297
| Target: 289 samples | Number of changes: 143 | |
| BC: XEK.1 + XEC.2 | BC BR: 15-16 | BC BR coord: 5705 - 5706 |
| Direction L1: << | Initial region span: 1-13,17-143 | Gap history (edge excluded): 13-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.83e-01 | |
| Rec. model vs L1: 2.00e-15 | Rec. model vs L2: 2.65e-32 | |
| Flags: Model_1BP_Best | | |
XEK.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.1 |
88 |
13 |
27.091884 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.1.2 |
33 |
13 |
27.008002 |
25.556273 |
-17.112547 |
9.277435e-01 |
* |
* |
|
| XEK.1.1 |
11 |
13 |
18.923304 |
17.471575 |
-0.943150 |
2.858624e-04 |
* |
* |
|
| XEK.7 |
12 |
10 |
16.741721 |
7.349839 |
19.300323 |
1.151057e-08 |
|
|
|
| XEK.6 |
23 |
10 |
16.697269 |
7.392398 |
19.215203 |
1.198033e-08 |
|
|
|
| XEK.2 |
67 |
10 |
16.597472 |
7.292601 |
19.414799 |
1.089458e-08 |
|
|
|
| JN.1 |
17255 |
13 |
13.628505 |
-6.371495 |
46.742989 |
1.266417e-14 |
|
* |
|
| XEC.2.1 |
265 |
8 |
13.015012 |
-29.018407 |
92.036813 |
1.844194e-24 |
|
|
|
| KP.3.1.1 |
12013 |
14 |
12.644192 |
2.644192 |
28.711616 |
1.041697e-10 |
|
* |
|
| KP.2.3 |
4440 |
10 |
12.483385 |
-15.374951 |
64.749902 |
1.555087e-18 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
198.006872 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.1 |
88 |
3 |
196.323932 |
160.699772 |
-39.399544 |
1.385445e-12 |
|
|
|
| KP.3.3 |
1715 |
16 |
191.808188 |
191.808188 |
-101.616376 |
4.492525e+01 |
* |
* |
|
| XEK.1.2 |
33 |
3 |
188.746271 |
153.194564 |
-24.389127 |
7.624460e-16 |
|
|
|
| XEC.14 |
193 |
25 |
183.025282 |
156.750509 |
-31.501018 |
2.667632e-14 |
|
|
|
| XEK.5 |
28 |
3 |
182.036925 |
164.678748 |
-47.357496 |
7.414489e-11 |
|
|
|
| XEC.31 |
66 |
25 |
180.525047 |
154.250273 |
-26.500547 |
2.189726e-15 |
|
|
|
| XEK.1.1 |
11 |
3 |
179.774906 |
152.307896 |
-22.615793 |
3.146723e-16 |
|
|
|
| XEC.33 |
169 |
52 |
177.108571 |
145.738331 |
-9.476661 |
4.411068e-19 |
|
|
|
| XEC.19 |
59 |
25 |
174.143674 |
147.868901 |
-13.737802 |
3.711855e-18 |
|
|
|
|
Target sequence
, 241_C|T, 583_C|T, 593_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3505_C|T, 3565_T|C, 3774_G|A, 4184_G|A, 4321_C|T, 4921_C|T, 5701_T|C, 5950_G|T, 6183_A|G, 7113_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9286_C|T, 9344_C|T, 9391_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16575_C|T, 17410_C|T, 18163_A|G, 18354_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19419_G|A, 19716_C|T, 19955_C|T, 20055_A|G, 21641_G|T, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25046_C|T, 25207_C|T, 25584_C|T, 25699_G|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 63 (XEK): USA/2025CV0302/2025
| Target: 289 samples | Number of changes: 156 | |
| BC: XEK.1 + FD.1.1 + XEK.1 | BC BR: 140-141, 143-144 | BC BR coord: 27915 - 27916, 28270 - 28271 |
| Direction L1: >> | Initial region span: 1-140,142-143,144-156 | Gap history (edge excluded): 140-144 -> 140-142 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.14e-03 | |
| Rec. model vs L1: 1.08e-15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEK.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.1 |
88 |
140 |
218.708144 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.5 |
28 |
140 |
197.934589 |
198.147089 |
-60.294177 |
9.077973e-10 |
|
* |
|
| XEK.6 |
23 |
140 |
185.448321 |
185.314080 |
-34.628161 |
2.432152e-15 |
|
* |
|
| XEK.1.2 |
33 |
140 |
176.482309 |
176.653885 |
-17.307770 |
4.216970e-19 |
|
* |
|
| KP.2.3 |
4440 |
140 |
170.440721 |
172.920295 |
-9.840590 |
1.006724e-20 |
|
* |
|
| KP.3.3 |
1715 |
140 |
170.067375 |
182.555212 |
-29.110424 |
1.539352e-16 |
|
* |
|
| KP.3.1.1 |
12013 |
140 |
168.159935 |
175.356906 |
-14.713813 |
1.149258e-19 |
|
* |
|
| XEK.2 |
67 |
140 |
166.916784 |
167.171613 |
1.656774 |
3.204183e-23 |
|
* |
|
| JN.1 |
17255 |
140 |
157.012071 |
155.763339 |
24.473323 |
3.569347e-28 |
|
* |
|
| KP.3.1 |
1957 |
140 |
155.848681 |
160.692312 |
14.615375 |
4.914610e-26 |
|
* |
|
| |||||
FD.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| FD.1.1 |
218 |
142 |
14.812338 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.5.1.26 |
94 |
142 |
12.465426 |
2.465426 |
1.069148 |
9.584720e-02 |
* |
* |
|
| BA.1.9 |
133 |
142 |
9.574093 |
-0.425907 |
6.851814 |
5.326824e-03 |
* |
* |
|
| JN.1.52 |
150 |
142 |
9.333521 |
-0.666479 |
7.332959 |
4.190229e-03 |
* |
* |
|
| BA.5.1.9 |
242 |
142 |
8.376916 |
-1.623084 |
9.246168 |
1.604409e-03 |
* |
* |
|
| CH.1.1.25 |
271 |
142 |
8.150554 |
-1.849446 |
9.698893 |
1.281146e-03 |
* |
* |
|
| FY.8.1 |
29 |
143 |
7.147088 |
-12.852912 |
31.705824 |
2.129060e-08 |
|
* |
|
| LP.8.1.1 |
2345 |
142 |
6.607299 |
-3.392701 |
12.785403 |
2.732837e-04 |
* |
* |
|
| XBB.1.5.72 |
569 |
143 |
6.485511 |
-13.514489 |
33.028978 |
1.100408e-08 |
|
* |
|
| XBB.1.15.1 |
11 |
143 |
6.037047 |
-13.962953 |
33.925906 |
7.016509e-09 |
|
* |
|
| |||||
XEK.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.1 |
88 |
144 |
0.25718 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 593_C|T, 670_T|G, 829_C|T, 897_C|A, 1905_T|C, 2031_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3505_C|T, 3565_T|C, 4184_G|A, 4321_C|T, 5392_C|T, 5701_T|C, 6183_A|G, 7113_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9286_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10138_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16954_C|T, 17410_C|T, 17550_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21742_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22994_A|G, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23287_T|C, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28039_T|C, 28131_.|T, 28132_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29200_C|T,
29510_A|C, 29734_29759, 29769_C|T
Case 63 (XEK): USA/CA-CDPH-500147163/2025
| Target: 289 samples | Number of changes: 155 | |
| BC: XEC.18 + KP.2.3 + XEC.18 | BC BR: 4-5, 38-39 | BC BR coord: 896 - 897, 12788 - 12789 |
| Direction L1: << | Initial region span: 1-4,21-38,39-155 | Gap history (edge excluded): 4-39 -> 4-21 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.76e-04 | |
| Rec. model vs L1: 3.07e-45 | Rec. model vs L2: 2.01e-60 | |
| Flags: Model_2BP_Best | | |
XEC.18 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
4 |
5.612364 |
None |
None |
None |
* |
* |
* |
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
21 |
22.489705 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.9 |
23 |
21 |
17.600501 |
-58.325561 |
192.651121 |
4.398931e-16 |
|
* |
|
| LF.1.1 |
15 |
35 |
14.962994 |
-100.362404 |
276.724808 |
2.442185e-34 |
|
|
|
| KP.2.5 |
66 |
35 |
14.159269 |
-83.013448 |
242.026896 |
8.329451e-27 |
|
|
|
| JN.1 |
17255 |
22 |
13.638522 |
-1.820132 |
79.640265 |
1.524603e+09 |
* |
* |
|
| JN.1.4 |
8971 |
22 |
12.484046 |
-2.778694 |
81.557388 |
5.837597e+08 |
* |
* |
|
| KP.2.3.3 |
149 |
21 |
12.363388 |
-63.576142 |
203.152283 |
2.308347e-18 |
|
* |
|
| KP.3.1.1 |
12013 |
21 |
12.232672 |
-2.561748 |
81.123495 |
7.274094e+08 |
* |
* |
|
| JN.1.38 |
247 |
35 |
12.157599 |
-76.653630 |
229.307260 |
4.816475e-24 |
|
|
|
| JN.1.18.3 |
97 |
26 |
9.481472 |
-64.858185 |
205.716370 |
6.386055e-19 |
|
|
|
| |||||
XEC.18 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
39 |
218.477804 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
21 |
215.781251 |
213.040631 |
-168.081261 |
1.588715e-05 |
* |
|
|
| XEC.2.3 |
28 |
39 |
213.459445 |
208.178265 |
-158.356529 |
1.231331e-07 |
|
* |
|
| XEC.8 |
592 |
39 |
213.200473 |
217.478622 |
-176.957244 |
1.346832e-03 |
* |
* |
|
| XEC.2.1 |
265 |
58 |
206.298206 |
210.450130 |
-162.900260 |
1.191855e-06 |
|
|
|
| XEC.33 |
169 |
39 |
202.522247 |
197.211178 |
-136.422356 |
2.119163e-12 |
|
* |
|
| KP.3.3 |
1715 |
21 |
200.745506 |
194.730451 |
-131.460901 |
1.774655e-13 |
|
|
|
| XEC.40 |
52 |
39 |
197.970137 |
192.650121 |
-127.300241 |
2.217081e-14 |
|
* |
|
| XEC.36 |
30 |
39 |
197.663987 |
192.382806 |
-126.765612 |
1.700957e-14 |
|
* |
|
| XEK.1 |
88 |
21 |
196.758634 |
203.292911 |
-148.585821 |
9.307783e-10 |
|
|
|
|
Target sequence
, 241_C|T, 593_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3505_C|T, 3565_T|C, 3736_C|T, 3909_T|C, 4184_G|A, 4321_C|T, 4825_T|C, 5622_C|T, 5701_T|C, 5761_G|A, 6183_A|G, 6601_A|G,
7105_C|T, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9286_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 9808_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10969_C|T, 11042_G|T, 11288_11296, 11727_G|A,
12544_A|G, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19287_T|A, 19716_C|T, 19955_C|T, 20055_A|G,
21302_C|T, 21304_C|A, 21305_G|A, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994,
22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A,
22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28057_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29380_A|G,
29510_A|C
Case 63 (XEK): USA/CA-LACPHL-AY11146/2025
| Target: 289 samples | Number of changes: 148 | |
| BC: XEK.1 + KP.2.6.2 | BC BR: 145-146 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-145,146-148 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.28e-09 | Rec. model vs L2: 4.25e-183 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEK.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.1 |
88 |
145 |
262.588514 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.5 |
28 |
145 |
249.494215 |
249.494215 |
-172.988430 |
2.055482e-06 |
|
* |
|
| XEK.6 |
23 |
145 |
247.789937 |
247.789937 |
-169.579875 |
3.736299e-07 |
|
* |
|
| XEK.2 |
67 |
145 |
242.190232 |
242.190232 |
-158.380463 |
1.381633e-09 |
|
* |
|
| XEK.1.2 |
33 |
145 |
239.778065 |
239.778065 |
-153.556130 |
1.240917e-10 |
|
* |
|
| XEK.1.1 |
11 |
145 |
230.983464 |
230.983464 |
-135.966929 |
1.879849e-14 |
|
* |
|
| KP.3.3 |
1715 |
148 |
223.631688 |
221.329767 |
-116.659534 |
1.205063e-18 |
|
|
|
| XEC.2 |
921 |
148 |
210.420146 |
207.851622 |
-89.703244 |
1.685466e-24 |
|
|
|
| XEK.7 |
12 |
145 |
206.481676 |
206.481676 |
-86.963353 |
4.282887e-25 |
|
* |
|
| KP.2.3 |
4440 |
148 |
200.201152 |
196.479239 |
-66.958479 |
1.944428e-29 |
|
|
|
| |||||
KP.2.6.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.6.2 |
26 |
146 |
7.729416 |
NaN |
NaN |
NaN |
* |
* |
* |
| GR.1 |
120 |
146 |
7.614753 |
7.614753 |
-9.229507 |
0.891366 |
* |
* |
|
| HP.1.1 |
48 |
146 |
7.441734 |
7.441734 |
-8.883468 |
0.748264 |
* |
* |
|
| XBB.1.5.62 |
311 |
146 |
7.154875 |
7.154875 |
-8.309750 |
0.562705 |
* |
* |
|
| BF.12 |
89 |
146 |
7.111513 |
7.111513 |
-8.223025 |
0.537944 |
* |
* |
|
| MC.17.1 |
10 |
146 |
6.813126 |
6.813126 |
-7.626251 |
0.400517 |
* |
* |
|
| XBB.1.44 |
23 |
146 |
5.967853 |
5.967853 |
-5.935706 |
0.172045 |
* |
* |
|
| XBB.1.17.1 |
134 |
146 |
5.825441 |
5.825441 |
-5.650883 |
0.148823 |
* |
* |
|
| ED.2 |
223 |
146 |
5.694784 |
5.694784 |
-5.389568 |
0.130680 |
* |
* |
|
| HU.1.1 |
72 |
146 |
5.556207 |
5.556207 |
-5.112413 |
0.113608 |
* |
* |
|
|
Target sequence
, 241_C|T, 593_C|T, 670_T|G, 897_C|A, 2338_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3505_C|T, 3565_T|C, 4184_G|A, 4321_C|T, 5701_T|C, 6183_A|G, 6636_C|T, 7113_C|T, 7119_C|T, 7842_A|G, 7843_C|T,
8293_C|T, 8393_G|A, 9286_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
14408_C|T, 14730_G|A, 15714_C|T, 15756_T|A, 16662_G|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21739_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T,
25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29095_C|T, 29510_A|C, 29734_29759
Case 63 (XEK): USA/IL-CDC-LC1134516/2025
| Target: 289 samples | Number of changes: 152 | |
| BC: XEK.6 + XEC.2 | BC BR: 17-18 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-14,19-152 | Gap history (edge excluded): 14-19 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.42e-29 | Rec. model vs L2: 2.46e-29 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEK.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.6 |
23 |
14 |
17.392398 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.7 |
12 |
14 |
17.349839 |
0.959630 |
40.080740 |
9.607894e-01 |
* |
* |
|
| XEK.2 |
67 |
14 |
17.292601 |
0.902392 |
40.195217 |
9.048374e-01 |
* |
* |
|
| XEK.1 |
88 |
10 |
16.730292 |
-7.190950 |
56.381899 |
2.774139e-04 |
* |
|
|
| XEK.1.2 |
33 |
10 |
16.646411 |
-7.263402 |
56.526805 |
2.573689e-04 |
* |
|
|
| KP.3.1 |
1957 |
13 |
16.423531 |
-9.968212 |
61.936424 |
1.721034e-05 |
* |
* |
|
| JN.1 |
17255 |
13 |
13.697315 |
-0.159116 |
42.318232 |
3.134862e-01 |
* |
* |
|
| XEK.5 |
28 |
14 |
9.232507 |
-7.157702 |
56.315405 |
2.858624e-04 |
* |
* |
|
| XEK.1.1 |
11 |
10 |
8.561713 |
-15.348101 |
72.696201 |
7.930220e-08 |
|
|
|
| BA.5.2.18 |
582 |
4 |
5.301905 |
-84.479317 |
210.958634 |
7.525020e-38 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
19 |
249.213712 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
21 |
247.097740 |
217.097740 |
-138.195480 |
2.486437e-10 |
|
|
|
| XEC.2.3 |
28 |
33 |
233.902806 |
190.959735 |
-85.919470 |
1.104383e-21 |
|
|
|
| XEC.8 |
592 |
33 |
233.600505 |
218.908493 |
-141.816985 |
1.519325e-09 |
|
|
|
| XEK.1 |
88 |
20 |
229.281364 |
209.281364 |
-122.562728 |
9.986072e-14 |
|
* |
|
| XEK.5 |
28 |
20 |
228.934746 |
208.934746 |
-121.869492 |
7.072339e-14 |
|
* |
|
| XEK.1.2 |
33 |
20 |
227.770867 |
199.342314 |
-102.684629 |
4.814016e-18 |
|
* |
|
| XEC.11.1 |
166 |
21 |
223.020012 |
183.873438 |
-71.746875 |
9.250035e-25 |
|
|
|
| XEC.33 |
169 |
33 |
223.000437 |
192.002090 |
-88.004180 |
3.124540e-21 |
|
|
|
| KP.3.3 |
1715 |
20 |
222.303587 |
214.525076 |
-133.050152 |
1.893517e-11 |
|
* |
|
|
Target sequence
, 241_C|T, 248_G|T, 593_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3505_C|T, 3565_T|C, 3736_C|T, 4184_G|A, 4321_C|T, 5701_T|C, 5761_G|A, 5920_T|C, 6183_A|G, 6601_A|G, 6781_C|T,
7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9286_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10969_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T,
12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19287_T|A, 19716_C|T, 19955_C|T, 20055_A|G, 20262_A|G, 21302_C|T, 21304_C|A,
21305_G|A, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A,
22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C,
22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C,
23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 63 (XEK): USA/NY-PRL-250415_83G08/2025
| Target: 289 samples | Number of changes: 149 | |
| BC: XEK.6 + KP.3.3.10 + XEK.6 | BC BR: 3-4, 8-9 | BC BR coord: 672 - 673, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,5-8,9-149 | Gap history (edge excluded): 3-9 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.89e-08 | |
| Rec. model vs L1: 8.01e-08 | Rec. model vs L2: 9.53e-79 | |
| Flags: Model_2BP_Best | | |
XEK.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.6 |
23 |
3 |
7.058661 |
None |
None |
None |
* |
* |
* |
| |||||
KP.3.3.10 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3.10 |
55 |
5 |
11.104350 |
NaN |
NaN |
NaN |
* |
* |
* |
| B.1.493 |
13 |
7 |
7.591531 |
-25.885472 |
73.770943 |
1.898418e-12 |
|
|
|
| JG.2 |
72 |
6 |
5.844423 |
-25.374283 |
72.748565 |
3.161419e-12 |
|
* |
|
| CP.5 |
75 |
6 |
5.817588 |
-17.193333 |
56.386666 |
1.128265e-08 |
|
* |
|
| AY.104 |
28 |
7 |
5.725663 |
-30.003001 |
82.006002 |
3.083889e-14 |
|
|
|
| JN.1 |
17255 |
4 |
5.427866 |
5.427866 |
11.144269 |
7.556551e+01 |
* |
* |
|
| N.5 |
93 |
7 |
5.218415 |
-24.781585 |
71.563169 |
5.731751e-12 |
|
|
|
| EG.2 |
163 |
6 |
5.035172 |
-14.964828 |
51.929657 |
1.049271e-07 |
|
* |
|
| JN.1.4 |
8971 |
5 |
4.643715 |
-1.330014 |
24.660027 |
8.759775e-02 |
* |
* |
|
| AY.43.2 |
141 |
8 |
4.105222 |
-25.941812 |
73.883625 |
1.796825e-12 |
|
|
|
| |||||
XEK.6 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.6 |
23 |
9 |
237.473449 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.1 |
88 |
15 |
235.494901 |
241.448869 |
-168.897738 |
4.595926e-02 |
* |
|
|
| XEK.5 |
28 |
9 |
234.567373 |
241.670486 |
-169.340971 |
5.726876e-02 |
* |
* |
|
| XEC.9 |
305 |
22 |
220.499829 |
187.240374 |
-60.480747 |
1.316040e-25 |
|
|
|
| XEK.2 |
67 |
9 |
219.210596 |
226.313709 |
-138.627417 |
1.228361e-08 |
|
* |
|
| XEK.1.2 |
33 |
15 |
214.099349 |
219.969435 |
-125.938871 |
2.156391e-11 |
|
|
|
| KP.3.3 |
1715 |
16 |
213.351318 |
203.284283 |
-92.568566 |
1.223275e-18 |
|
|
|
| XEK.1.1 |
11 |
15 |
213.350667 |
219.220754 |
-124.441508 |
1.018607e-11 |
|
|
|
| XEC.2 |
921 |
16 |
209.533185 |
181.313082 |
-48.626163 |
3.516206e-28 |
|
|
|
| XEC.29 |
135 |
22 |
208.604975 |
157.710619 |
-1.421239 |
1.970394e-38 |
|
|
|
|
Target sequence
, 241_C|T, 593_C|T, 670_T|G, 829_C|T, 897_C|A, 2790_C|T, 3037_C|T, 3048_A|G, 3431_G|T, 3505_C|T, 3565_T|C, 4184_G|A, 4321_C|T, 5392_C|T, 5701_T|C, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9286_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16954_C|T, 17285_C|T, 17410_C|T, 18163_A|G, 18171_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19080_A|G, 19716_C|T, 19955_C|T, 20055_A|G, 21077_C|T, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21742_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T,
25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27481_C|T, 27807_C|T,
27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 63 (XEK): IGS-10285-CVDP-5E07523F-5968-4EAF-99D3-0FF692B7D24D
| Target: 289 samples | Number of changes: 144 | |
| BC: XEK.5 + B.1.1.434 + XEK.5 | BC BR: 5-6, 8-9 | BC BR coord: 2792 - 2793, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-5,6-8,9-144 | Gap history (edge excluded): 5-9 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.85e-08 | |
| Rec. model vs L1: 1.47e-14 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEK.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.5 |
28 |
5 |
3.603332 |
None |
None |
None |
* |
* |
* |
| |||||
B.1.1.434 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| B.1.1.434 |
1274 |
6 |
8.009487 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.3.14 |
18 |
7 |
6.536776 |
-3.463224 |
12.926449 |
0.000010 |
* |
* |
|
| B.1.1.304 |
143 |
7 |
6.536776 |
-3.463224 |
12.926449 |
0.000010 |
* |
* |
|
| AZ.5 |
21 |
7 |
6.536776 |
-3.463224 |
12.926449 |
0.000010 |
* |
* |
|
| KP.3.1.5 |
45 |
7 |
6.536776 |
-3.463224 |
12.926449 |
0.000010 |
* |
* |
|
| NL.11 |
57 |
7 |
6.131310 |
-3.868690 |
13.737379 |
0.000007 |
|
* |
|
| KP.3.1 |
1957 |
6 |
5.331302 |
5.331302 |
-4.662603 |
0.068563 |
* |
* |
|
| B.1.1.306 |
97 |
8 |
4.523128 |
-5.493820 |
16.987640 |
0.000001 |
|
|
|
| JE.1.1.1 |
46 |
7 |
4.499894 |
-5.500106 |
17.000213 |
0.000001 |
|
* |
|
| XBB.1.5.77 |
308 |
6 |
4.394709 |
4.394709 |
-2.789418 |
0.026917 |
* |
* |
|
| |||||
XEK.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.5 |
28 |
9 |
287.216513 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.1 |
88 |
15 |
280.497542 |
291.156073 |
-274.312145 |
1.397940e+00 |
* |
|
|
| XEK.6 |
23 |
9 |
276.969235 |
288.732459 |
-269.464917 |
1.236871e-01 |
* |
* |
|
| XEK.2 |
67 |
1 |
275.976074 |
283.643991 |
-259.287982 |
7.654857e-04 |
* |
|
|
| XEK.1.2 |
33 |
15 |
270.672104 |
281.246753 |
-254.493507 |
6.944330e-05 |
* |
|
|
| XEK.1.1 |
11 |
15 |
266.017825 |
276.497165 |
-244.994329 |
6.008022e-07 |
|
|
|
| XEC.2 |
921 |
16 |
262.221896 |
238.686638 |
-169.373276 |
2.280642e-23 |
|
|
|
| KP.3.3 |
1715 |
16 |
260.095641 |
254.704244 |
-201.408487 |
2.067544e-16 |
|
|
|
| XEC.2.1 |
265 |
27 |
257.006081 |
223.302575 |
-138.605150 |
4.770985e-30 |
|
|
|
| XEC.8 |
592 |
16 |
254.346062 |
250.548209 |
-193.096417 |
3.243107e-18 |
|
|
|
|
Target sequence
, 241_C|T, 593_C|T, 670_T|G, 897_C|A, 2790_C|T, 2947_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3505_C|T, 3565_T|C, 4184_G|A, 4321_C|T, 4780_C|T, 5701_T|C, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9286_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
14556_T|C, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23621_G|A, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 71 (XFB): Denmark/DCGC-692189/2025
| Target: 9 samples | Number of changes: 148 | |
| BC: KP.2.3 + XFB.3 | BC BR: 15-16 | BC BR coord: 7118 - 7119 |
| Direction L1: << | Initial region span: 1-15,17-148 | Gap history (edge excluded): 15-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.21e-01 | |
| Rec. model vs L1: 2.16e-54 | Rec. model vs L2: 1.73e-13 | |
| Flags: Model_1BP_Best | | |
KP.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
15 |
27.676390 |
NaN |
NaN |
NaN |
* |
* |
* |
| MF.1 |
35 |
12 |
27.284261 |
-11.627622 |
67.255245 |
8.512466e-18 |
|
|
|
| KP.3.1.1 |
12013 |
15 |
26.134250 |
26.134250 |
-8.268500 |
2.143811e-01 |
* |
* |
|
| MC.9 |
298 |
12 |
25.342468 |
23.335709 |
-2.671418 |
1.303653e-02 |
* |
|
|
| LF.7.9.3 |
20 |
10 |
20.996396 |
-10.469164 |
64.938327 |
2.715420e-17 |
|
|
|
| XFB.3 |
56 |
10 |
20.989870 |
3.921235 |
36.157530 |
4.823192e-11 |
|
|
|
| BA.2.86.1 |
1343 |
14 |
20.007899 |
10.007899 |
23.984202 |
2.129060e-08 |
|
* |
|
| JN.1.7.6 |
67 |
10 |
19.957551 |
-14.302615 |
72.605230 |
5.865670e-19 |
|
|
|
| JN.1.65.1 |
46 |
10 |
19.947679 |
-27.922911 |
99.845822 |
7.132254e-25 |
|
|
|
| KP.2.8 |
51 |
10 |
19.758085 |
-0.893584 |
45.787167 |
3.910269e-13 |
|
|
|
| |||||
XFB.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFB.3 |
56 |
17 |
246.995466 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
1 |
233.622447 |
207.488197 |
-126.976394 |
1.535116e-13 |
|
|
|
| MC.1 |
932 |
1 |
222.716027 |
209.045941 |
-130.091882 |
7.268909e-13 |
|
|
|
| MC.24 |
831 |
14 |
212.260699 |
204.266507 |
-120.533013 |
6.102975e-15 |
|
|
|
| MC.19 |
221 |
17 |
197.642832 |
187.642832 |
-87.285664 |
3.694599e-22 |
|
* |
|
| MC.28 |
304 |
1 |
196.599073 |
181.315025 |
-74.630050 |
6.583900e-25 |
|
|
|
| KP.3.1 |
1957 |
1 |
191.675662 |
177.025984 |
-66.051968 |
9.023186e-27 |
|
|
|
| MC.21.1 |
187 |
17 |
188.103654 |
178.103654 |
-68.207308 |
2.657039e-26 |
|
* |
|
| MC.10.1 |
650 |
17 |
180.678112 |
170.678112 |
-53.356224 |
1.584023e-29 |
|
* |
|
| MC.42 |
84 |
1 |
180.300534 |
164.720658 |
-41.441316 |
4.086639e-32 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4218_G|A, 4321_C|T, 6040_C|T, 6183_A|G, 7113_C|T, 7471_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13121_A|T, 13339_T|C, 14408_C|T,
15372_G|T, 15714_C|T, 15756_T|A, 17334_G|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19722_A|G, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21633_21641,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22111_G|T, 22131_G|C, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22858_C|T, 22865_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24022_T|C, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 25595_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26690_G|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27752_C|T,
27807_C|T, 27810_T|C, 28211_A|G, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 71 (XFB): OZ285853
| Target: 9 samples | Number of changes: 151 | |
| BC: KP.3.1.1 + LF.7.1.8 + KP.3.1.1 | BC BR: 138-139, 141-142 | BC BR coord: 27387 - 27388, 27810 - 27811 |
| Direction L1: >> | Initial region span: 1-138,139-141,144-151 | Gap history (edge excluded): 138-144 -> 141-144 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.23e-01 | |
| Rec. model vs L1: 1.26e-07 | Rec. model vs L2: 1.67e-189 | |
| Flags: Model_2BP_Best | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
138 |
234.570858 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.1 |
932 |
138 |
208.439599 |
206.724207 |
-95.448413 |
1.500834e-12 |
|
* |
|
| XFB.3 |
56 |
150 |
207.845939 |
213.242383 |
-108.484765 |
1.013354e-09 |
|
|
|
| KP.3.1 |
1957 |
138 |
194.065974 |
181.491795 |
-44.983591 |
1.647826e-23 |
|
* |
|
| MC.24 |
831 |
138 |
192.056902 |
179.435778 |
-40.871556 |
2.110748e-24 |
|
* |
|
| MC.13 |
807 |
138 |
185.570478 |
172.981527 |
-27.963053 |
3.319445e-27 |
|
* |
|
| MC.10 |
221 |
138 |
183.579011 |
171.028903 |
-24.057806 |
4.722709e-28 |
|
* |
|
| MC.19 |
221 |
138 |
181.928622 |
169.357382 |
-20.714764 |
8.846020e-29 |
|
* |
|
| KP.2.3 |
4440 |
138 |
180.476340 |
179.277858 |
-40.555715 |
1.807676e-24 |
|
* |
|
| MC.10.1 |
650 |
138 |
179.499675 |
167.005837 |
-16.011673 |
8.436376e-30 |
|
* |
|
| |||||
LF.7.1.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.1.8 |
44 |
141 |
10.292769 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.3 |
29 |
141 |
10.039505 |
10.039505 |
-10.079011 |
7.749165e-01 |
* |
* |
|
| XBF.7.1 |
13 |
140 |
9.792451 |
-0.207549 |
10.415099 |
2.739911e-05 |
* |
* |
|
| XFG.2 |
500 |
141 |
9.590088 |
9.590088 |
-9.180177 |
4.941086e-01 |
* |
* |
|
| MC.23 |
64 |
141 |
9.247918 |
9.247918 |
-8.495836 |
3.516918e-01 |
* |
* |
|
| JN.1.29 |
69 |
141 |
9.172695 |
9.172695 |
-8.345390 |
3.262798e-01 |
* |
* |
|
| KP.3.3.3 |
288 |
141 |
7.743841 |
7.743841 |
-5.487682 |
7.808167e-02 |
* |
* |
|
| AY.34.2 |
258 |
139 |
6.420271 |
-15.653220 |
41.306439 |
5.371038e-12 |
|
|
|
| KP.2.2 |
1334 |
141 |
6.210864 |
6.210864 |
-2.421728 |
1.682314e-02 |
* |
* |
|
| BA.2.75.4 |
36 |
140 |
6.208932 |
-3.791068 |
17.582136 |
7.637693e-07 |
|
* |
|
| |||||
KP.3.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
144 |
7.419819 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1758_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5672_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 8809_C|T, 9344_C|T, 9424_A|G,
9534_C|T, 9565_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12043_C|T, 12235_A|C, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13121_A|T, 13339_T|C,
14408_C|T, 15372_G|T, 15714_C|T, 15756_T|A, 17334_G|T, 17410_C|T, 18163_A|G, 18449_G|T, 18492_A|G, 18894_C|T, 19722_A|G, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21633_21641, 21653_21655, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22111_G|T, 22131_G|C, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22666_A|G, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22858_C|T, 22865_G|T,
22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25595_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27546_T|C, 27807_C|T, 27810_T|C, 27982_C|T, 28211_A|G, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): BHR/25000004638/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.8 + XEC.2 | BC BR: 13-14 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-13,17-146 | Gap history (edge excluded): 13-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.12e-02 | |
| Rec. model vs L1: 1.13e-21 | Rec. model vs L2: 5.71e-18 | |
| Flags: Model_1BP_Best | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
13 |
27.259665 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4.1 |
68 |
13 |
16.558685 |
16.558685 |
-7.117369 |
2.254494e-05 |
* |
* |
|
| XEC.5 |
126 |
13 |
15.907539 |
15.907539 |
-5.815079 |
1.176949e-05 |
* |
* |
|
| XEC.39 |
155 |
13 |
15.705718 |
15.705718 |
-5.411435 |
9.587983e-06 |
|
* |
|
| XEC.32 |
42 |
15 |
14.250469 |
5.079158 |
15.841683 |
2.329960e-10 |
|
|
|
| MC.10.1 |
650 |
14 |
14.198579 |
8.716119 |
8.567761 |
8.830979e-09 |
|
* |
|
| KP.3.1.1 |
12013 |
13 |
13.612549 |
13.612549 |
-1.225098 |
1.185910e-06 |
|
* |
|
| LY.1 |
178 |
13 |
11.356933 |
11.356933 |
3.286133 |
1.237503e-07 |
|
* |
|
| MC.24 |
831 |
13 |
9.510400 |
9.510400 |
6.979199 |
1.955568e-08 |
|
* |
|
| KP.3.3 |
1715 |
13 |
8.726622 |
8.726622 |
8.546756 |
8.919731e-09 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
232.121365 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.5 |
28 |
17 |
231.627599 |
197.240788 |
-106.481577 |
7.597014e-03 |
* |
* |
|
| XEC.29 |
135 |
17 |
224.351842 |
185.788764 |
-83.577528 |
8.090421e-08 |
|
* |
|
| XEC.32 |
42 |
7 |
219.374555 |
205.300617 |
-122.601234 |
2.404675e+01 |
* |
|
|
| XEC.18 |
165 |
17 |
216.686713 |
186.686713 |
-85.373427 |
1.979998e-07 |
|
* |
|
| XEC.39 |
155 |
17 |
215.163625 |
185.163625 |
-82.327250 |
4.330490e-08 |
|
* |
|
| XEC.30 |
135 |
17 |
213.027734 |
197.021805 |
-106.043609 |
6.096747e-03 |
* |
* |
|
| XEC.2.2 |
273 |
17 |
212.493655 |
182.493655 |
-76.987309 |
2.998961e-09 |
|
* |
|
| XEC.31 |
66 |
17 |
211.301202 |
181.301202 |
-74.602404 |
9.077973e-10 |
|
* |
|
| XEC.3 |
29 |
17 |
211.142481 |
181.142481 |
-74.284963 |
7.735738e-10 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 745_C|T, 897_C|A, 2060_G|A, 2659_G|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6362_G|A, 7318_C|T, 7360_G|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15162_A|G, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18186_G|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22893_A|C, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28851_G|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759, 29762_C|T
Case 72 (XEC): BHR/25020232316/2025
| Target: 5350 samples | Number of changes: 149 | |
| BC: XEC.2 + XEC.25 + XEC.2 | BC BR: 4-5, 13-14 | BC BR coord: 1884 - 1885, 6183 - 6184 |
| Direction L1: << | Initial region span: 1-4,5-13,15-149 | Gap history (edge excluded): 4-15 -> 13-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.64e-04 | |
| Rec. model vs L1: 9.75e-26 | Rec. model vs L2: 4.14e-39 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
4 |
4.959443 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.25 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.25 |
13 |
13 |
28.661750 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8.1 |
12 |
14 |
15.688113 |
10.273328 |
3.453344 |
1.036325e-08 |
|
* |
|
| XEC.24.1 |
18 |
9 |
14.603690 |
10.303181 |
3.393638 |
1.067886e-08 |
|
|
|
| XEC.19 |
59 |
9 |
14.603690 |
3.572575 |
16.854850 |
1.275625e-11 |
|
|
|
| XEC.34 |
22 |
9 |
14.603690 |
10.360339 |
3.279322 |
1.128265e-08 |
|
|
|
| XEC.11.1 |
166 |
9 |
14.603690 |
1.156036 |
21.687927 |
1.134306e-12 |
|
|
|
| XEC.17 |
13 |
9 |
14.603690 |
10.360339 |
3.279322 |
1.128265e-08 |
|
|
|
| XEC.32 |
42 |
9 |
14.603690 |
10.360339 |
3.279322 |
1.128265e-08 |
|
|
|
| XEC.4.6.1 |
13 |
9 |
14.603690 |
10.360339 |
3.279322 |
1.128265e-08 |
|
|
|
| XEC.4.1.4 |
23 |
9 |
14.603690 |
5.289815 |
13.420370 |
7.088233e-11 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
209.885495 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.39 |
155 |
32 |
202.892756 |
171.031197 |
-32.062394 |
2.062206e-15 |
|
|
|
| KP.3.3 |
1715 |
42 |
202.230148 |
189.193822 |
-68.387644 |
1.596950e-07 |
|
|
|
| XEC.2.1 |
265 |
42 |
199.430248 |
164.960131 |
-19.920261 |
4.766116e-18 |
|
|
|
| XEC.4 |
192 |
42 |
192.163249 |
157.406879 |
-4.813757 |
2.494996e-21 |
|
|
|
| XEC.29 |
135 |
42 |
185.229244 |
165.987965 |
-21.975931 |
1.335020e-17 |
|
|
|
| KP.3.1.1 |
12013 |
47 |
180.607989 |
177.888882 |
-45.777763 |
1.966040e-12 |
|
|
|
| XEC.18 |
165 |
42 |
179.195020 |
154.932544 |
0.134911 |
2.110388e-22 |
|
|
|
| XEC.31 |
66 |
42 |
173.452251 |
138.686316 |
32.627369 |
1.849597e-29 |
|
|
|
| XEC.40 |
52 |
42 |
173.440951 |
132.341371 |
45.317258 |
3.246972e-32 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1884_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3971_G|A, 4184_G|A, 4321_C|T, 6183_A|G, 7420_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10733_C|T, 11042_G|T, 11074_C|T, 11288_11296, 11727_G|A, 12043_C|T, 12781_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15105_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18151_T|C, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 19964_T|C, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
25629_T|C, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28453_C|T, 28674_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29733_29758, 29759_G|T
Case 72 (XEC): BHR/25040003778/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: NM.1 + XEC.13 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,7-144 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.03e-212 | Rec. model vs L2: 6.04e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
NM.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NM.1 |
41 |
4 |
10.513390 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.1.7 |
17 |
4 |
8.449310 |
8.449310 |
-8.898619 |
0.126818 |
* |
* |
|
| MK.2 |
15 |
4 |
7.881326 |
7.881326 |
-7.762651 |
0.071719 |
* |
* |
|
| MC.9.1 |
15 |
4 |
7.881326 |
7.881326 |
-7.762651 |
0.071719 |
* |
* |
|
| PA.1.4 |
14 |
4 |
7.876211 |
7.876211 |
-7.752421 |
0.071361 |
* |
* |
|
| JN.2.2 |
16 |
4 |
7.816787 |
7.816787 |
-7.633574 |
0.067206 |
* |
* |
|
| MC.5 |
19 |
4 |
7.644937 |
7.644937 |
-7.289874 |
0.056699 |
* |
* |
|
| JN.1.56 |
21 |
4 |
7.496063 |
7.496063 |
-6.992126 |
0.048801 |
* |
* |
|
| LF.7.1.3 |
24 |
4 |
7.368762 |
7.368762 |
-6.737525 |
0.043067 |
* |
* |
|
| KP.4.2 |
75 |
4 |
7.302649 |
7.302649 |
-6.605299 |
0.040357 |
* |
* |
|
| |||||
XEC.13 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.13 |
30 |
7 |
265.469966 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
14 |
261.124216 |
233.725098 |
-169.450196 |
6.710049e-13 |
|
|
|
| XEC.16 |
23 |
7 |
256.091262 |
252.377663 |
-206.755326 |
8.481824e-05 |
* |
* |
|
| XEC.31 |
66 |
14 |
245.788644 |
234.600906 |
-171.201813 |
1.609657e-12 |
|
|
|
| MC.24.1 |
25 |
7 |
245.783893 |
241.416368 |
-184.832735 |
1.467068e-09 |
|
* |
|
| XEC.39 |
155 |
7 |
237.583806 |
233.863734 |
-169.727469 |
7.718393e-13 |
|
* |
|
| KP.3.3 |
1715 |
15 |
236.907737 |
228.296675 |
-158.593350 |
2.941079e-15 |
|
|
|
| XEC.9 |
305 |
15 |
235.877310 |
230.107992 |
-162.215984 |
1.806139e-14 |
|
|
|
| XEC.14 |
193 |
3 |
232.297944 |
228.083666 |
-158.167331 |
2.383992e-15 |
|
|
|
| XEC.28 |
39 |
14 |
231.637429 |
221.387462 |
-144.774924 |
2.934484e-18 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 835_C|T, 897_C|A, 2060_G|A, 2286_G|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5184_C|A, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13821_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 15849_T|C,
17410_C|T, 18163_A|G, 18315_G|A, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21595_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27101_T|C, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): Denmark/DCGC-692047/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.25 + XEC.2 | BC BR: 9-10 | BC BR coord: 3566 - 3567 |
| Direction L1: << | Initial region span: 1-9,16-145 | Gap history (edge excluded): 9-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.55e-01 | |
| Rec. model vs L1: 3.54e-25 | Rec. model vs L2: 4.61e-17 | |
| Flags: Model_1BP_Best | | |
XEC.25 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.25 |
13 |
9 |
24.715389 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
9 |
20.865923 |
20.865923 |
-21.731845 |
2.127974e-02 |
* |
* |
|
| XEC.9 |
305 |
9 |
20.381513 |
20.381513 |
-20.763027 |
1.310187e-02 |
* |
* |
|
| XEC.8 |
592 |
9 |
20.371099 |
20.371099 |
-20.742198 |
1.297151e-02 |
* |
* |
|
| KP.3.3 |
1715 |
12 |
15.994590 |
14.104611 |
-8.209223 |
2.466809e-05 |
* |
|
|
| KP.3.1 |
1957 |
12 |
15.459081 |
12.316639 |
-4.633278 |
4.118589e-06 |
|
|
|
| MC.24 |
831 |
12 |
15.277126 |
13.356415 |
-6.712830 |
1.165238e-05 |
* |
|
|
| XEC.39 |
155 |
12 |
13.565774 |
9.270302 |
1.459396 |
1.960296e-07 |
|
|
|
| KP.3.1.12 |
39 |
4 |
11.473441 |
0.462399 |
19.075202 |
2.925414e-11 |
|
|
|
| KP.3.1.1 |
12013 |
12 |
11.384515 |
9.735863 |
0.528274 |
3.120820e-07 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
253.679803 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
1 |
225.983668 |
205.602154 |
-113.204308 |
1.761245e-12 |
|
|
|
| KP.3.3 |
1715 |
16 |
225.823976 |
206.945150 |
-115.890299 |
6.759988e-12 |
|
* |
|
| XEK.5 |
28 |
31 |
222.445529 |
182.314188 |
-66.628377 |
1.359167e-22 |
|
|
|
| XEC.32 |
42 |
16 |
220.030730 |
195.787379 |
-93.574758 |
9.620984e-17 |
|
* |
|
| XEC.38 |
34 |
16 |
219.996578 |
195.753227 |
-93.506455 |
9.336641e-17 |
|
* |
|
| XEC.33 |
169 |
31 |
219.238350 |
190.658688 |
-83.317375 |
5.720846e-19 |
|
|
|
| XEC.16 |
23 |
16 |
218.994518 |
194.751167 |
-91.502335 |
3.417627e-17 |
|
* |
|
| XEC.39 |
155 |
5 |
218.684899 |
204.120471 |
-110.240942 |
4.009258e-13 |
|
|
|
| XEK.1 |
88 |
16 |
217.360017 |
171.978279 |
-45.956558 |
4.414072e-27 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1102_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3768_C|T, 4184_G|A, 4321_C|T, 5518_G|A, 6183_A|G, 6317_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11962_C|T, 12781_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14055_G|T, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25665_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29167_C|T, 29510_A|C, 29734_29759, 29769_C|T
Case 72 (XEC): Denmark/DCGC-692052/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.24 + JN.1 + XEC.24 | BC BR: 4-5, 15-16 | BC BR coord: 2060 - 2061, 5620 - 5621 |
| Direction L1: << | Initial region span: 1-4,5-13,16-143 | Gap history (edge excluded): 4-16 -> 13-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.81e-17 | |
| Rec. model vs L1: 8.65e-26 | Rec. model vs L2: 1.59e-48 | |
| Flags: Model_2BP_Best | | |
XEC.24 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.24 |
11 |
4 |
11.00522 |
None |
None |
None |
* |
* |
* |
| |||||
JN.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
13 |
15.465153 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.1.2 |
26 |
5 |
7.175400 |
-28.584526 |
95.169053 |
6.197319e-19 |
|
|
|
| KP.3.1.1 |
12013 |
9 |
7.019484 |
0.224152 |
37.551696 |
2.014781e-06 |
|
|
|
| BA.5.2.6 |
3344 |
5 |
5.409616 |
-32.560673 |
103.121345 |
1.163813e-20 |
|
|
|
| DF.1 |
256 |
5 |
4.888319 |
-48.472106 |
134.944212 |
1.433039e-27 |
|
|
|
| BQ.1.1.8 |
1026 |
5 |
4.598685 |
-50.153869 |
138.307737 |
2.657491e-28 |
|
|
|
| BA.5.1.23 |
4202 |
8 |
4.448381 |
-18.040685 |
74.081369 |
2.354177e-14 |
|
|
|
| XFG.3 |
480 |
5 |
4.259710 |
-39.431978 |
116.863956 |
1.208593e-23 |
|
|
|
| AY.47 |
22935 |
5 |
4.030663 |
-68.675780 |
175.351559 |
2.406235e-36 |
|
|
|
| B.1.577 |
618 |
5 |
4.007008 |
-74.434966 |
186.869931 |
7.582315e-39 |
|
|
|
| |||||
XEC.24 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.24 |
11 |
16 |
256.811319 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
16 |
250.257031 |
261.244014 |
-246.488029 |
1.401797e-03 |
* |
* |
|
| XEC.6 |
45 |
16 |
249.390178 |
260.372925 |
-244.745850 |
5.872852e-04 |
* |
* |
|
| XEC.17 |
13 |
16 |
247.601456 |
258.606676 |
-241.213352 |
1.000340e-04 |
* |
* |
|
| XEC.31 |
66 |
16 |
244.931072 |
255.905758 |
-235.811516 |
6.722839e-06 |
|
* |
|
| XEC.28 |
39 |
16 |
244.226999 |
255.153600 |
-234.307200 |
3.175644e-06 |
|
* |
|
| XEC.14 |
193 |
16 |
244.192137 |
255.171219 |
-234.342438 |
3.223638e-06 |
|
* |
|
| XEC.2 |
921 |
16 |
244.140724 |
238.822282 |
-201.644565 |
2.556416e-13 |
|
* |
|
| XEC.19 |
59 |
16 |
243.976078 |
254.929112 |
-233.858224 |
2.535804e-06 |
|
* |
|
| XEC.36 |
30 |
16 |
242.546123 |
253.551344 |
-231.102687 |
6.379538e-07 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2139_A|G, 2589_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3506_A|G, 3565_T|C, 4184_G|A, 4321_C|T, 4891_C|T, 5619_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14790_C|A, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24760_T|C, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28744_C|T,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): Denmark/DCGC-692055/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.2 + XEC.25 + XEC.2 | BC BR: 5-6, 11-12 | BC BR coord: 896 - 897, 3566 - 3567 |
| Direction L1: << | Initial region span: 1-5,6-11,18-147 | Gap history (edge excluded): 5-18 -> 11-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.25e-01 | |
| Rec. model vs L1: 4.80e-17 | Rec. model vs L2: 5.43e-26 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
5 |
8.393377 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.25 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.25 |
13 |
11 |
19.996570 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
11 |
16.162852 |
16.162852 |
-18.325703 |
2.170962e-02 |
* |
* |
|
| XEC.8 |
592 |
11 |
15.721092 |
15.721092 |
-17.442183 |
1.391205e-02 |
* |
* |
|
| XEC.9 |
305 |
11 |
15.699037 |
15.699037 |
-17.398074 |
1.363657e-02 |
* |
* |
|
| KP.3.3 |
1715 |
14 |
11.314662 |
9.424684 |
-4.849367 |
2.567482e-05 |
* |
|
|
| KP.3.1 |
1957 |
14 |
10.777917 |
7.635475 |
-1.270950 |
4.286672e-06 |
|
|
|
| MC.24 |
831 |
14 |
10.584958 |
8.664247 |
-3.328494 |
1.200725e-05 |
* |
|
|
| XEC.39 |
155 |
14 |
8.859900 |
4.564428 |
4.871144 |
1.989922e-07 |
|
|
|
| JD.1.1.5 |
61 |
6 |
6.859216 |
-22.059689 |
58.119379 |
5.441837e-19 |
|
|
|
| KP.3.1.12 |
39 |
6 |
6.806573 |
-4.204469 |
22.408939 |
3.090819e-11 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
18 |
253.050390 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
1 |
229.442273 |
213.743236 |
-119.486472 |
2.575442e-12 |
|
|
|
| KP.3.3 |
1715 |
18 |
225.081448 |
215.514144 |
-123.028288 |
1.512004e-11 |
|
* |
|
| XEK.5 |
28 |
33 |
221.657914 |
191.452515 |
-74.905030 |
5.375610e-22 |
|
|
|
| XEC.38 |
34 |
18 |
219.454357 |
204.687530 |
-101.375061 |
3.008259e-16 |
|
* |
|
| XEC.32 |
42 |
18 |
219.370547 |
201.831408 |
-95.662816 |
1.722793e-17 |
|
* |
|
| XEC.33 |
169 |
33 |
218.603237 |
198.156206 |
-88.312412 |
4.367177e-19 |
|
|
|
| XEC.16 |
23 |
18 |
218.223071 |
200.971993 |
-93.943986 |
7.290205e-18 |
|
* |
|
| XEC.39 |
155 |
7 |
218.013879 |
211.429158 |
-114.858316 |
2.543666e-13 |
|
|
|
| XEC.36 |
30 |
16 |
216.813606 |
207.841698 |
-107.683396 |
7.020093e-15 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1102_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3768_C|T, 4184_G|A, 4321_C|T, 5518_G|A, 6183_A|G, 6317_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11962_C|T, 12781_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
14055_G|T, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25665_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29167_C|T, 29510_A|C, 29734_29759, 29769_C|T
Case 72 (XEC): Denmark/DCGC-692133/2025
| Target: 5350 samples | Number of changes: 149 | |
| BC: LB.1.4.1 + XEC.2 | BC BR: 15-16 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-5,16-149 | Gap history (edge excluded): 5-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.29e-145 | Rec. model vs L2: 2.36e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LB.1.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LB.1.4.1 |
74 |
5 |
9.746843 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.9 |
576 |
5 |
8.679148 |
-20.870652 |
93.741304 |
5.364643e+02 |
* |
* |
|
| MC.6 |
366 |
5 |
8.271496 |
-28.499733 |
108.999467 |
2.605397e-01 |
* |
* |
|
| BA.5.2.48 |
267 |
4 |
7.771518 |
-68.166895 |
188.333789 |
1.547331e-18 |
|
* |
|
| JN.1.43 |
317 |
5 |
7.698286 |
-21.859784 |
95.719568 |
1.993376e+02 |
* |
* |
|
| BA.5.2.16 |
361 |
4 |
5.420985 |
-64.364757 |
180.729515 |
6.916754e-17 |
|
* |
|
| XBB.1.21 |
24 |
3 |
5.414703 |
-72.054615 |
196.109231 |
3.163572e-20 |
|
|
|
| DV.1.1 |
254 |
4 |
4.961095 |
-85.316881 |
222.633761 |
5.513571e-26 |
|
* |
|
| NM.2 |
28 |
5 |
4.868087 |
-24.667766 |
101.335532 |
1.200112e+01 |
* |
* |
|
| BF.31 |
90 |
4 |
4.838919 |
-64.932750 |
181.865499 |
3.911600e-17 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
243.378221 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
17 |
214.047209 |
204.047209 |
-122.094419 |
8.260885e-18 |
|
* |
|
| XEC.33 |
169 |
17 |
212.307018 |
202.307018 |
-118.614035 |
1.449954e-18 |
|
* |
|
| XEC.31 |
66 |
17 |
208.782562 |
198.782562 |
-111.565125 |
4.291781e-20 |
|
* |
|
| XEC.28 |
39 |
17 |
208.499160 |
191.524620 |
-97.049239 |
3.017586e-23 |
|
* |
|
| XEC.8 |
592 |
14 |
200.890310 |
198.745143 |
-111.490286 |
4.123498e-20 |
|
|
|
| XEC.2.2 |
273 |
16 |
200.522431 |
200.522431 |
-115.044861 |
2.432980e-19 |
|
* |
|
| XEC.18 |
165 |
17 |
200.196005 |
190.196005 |
-94.392009 |
7.980829e-24 |
|
* |
|
| XEC.2.1 |
265 |
17 |
198.341674 |
188.341674 |
-90.683347 |
1.248624e-24 |
|
* |
|
| XEC.17 |
13 |
17 |
197.601456 |
187.601456 |
-89.202911 |
5.957359e-25 |
|
* |
|
|
Target sequence
, 44_C|T, 180_C|T, 241_C|T, 670_T|G, 897_C|A, 1729_G|T, 2060_G|A, 2374_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4067_G|A, 4184_G|A, 4321_C|T, 4890_C|T, 6183_A|G, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11681_C|T, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13452_C|T,
13458_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 16474_A|G, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19779_A|G, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25493_C|T, 25584_C|T, 25983_A|G, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27370_C|T, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): Denmark/DCGC-692246/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.3.1.1 + XEC.2 | BC BR: 16-17 | BC BR coord: 6660 - 6661 |
| Direction L1: << | Initial region span: 1-16,17-145 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.41e-03 | |
| Rec. model vs L1: 5.14e-63 | Rec. model vs L2: 2.55e-24 | |
| Flags: Model_1BP_Best | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
16 |
20.410738 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.35.1 |
28 |
13 |
17.890032 |
1.499823 |
39.000354 |
6.130436e-09 |
|
|
|
| XEC.23 |
142 |
13 |
17.704623 |
-3.773639 |
49.547277 |
3.137530e-11 |
|
|
|
| XEC.4.7 |
13 |
13 |
17.629701 |
-7.748836 |
57.497673 |
5.892063e-13 |
|
|
|
| XEC.17 |
13 |
13 |
16.675670 |
0.285461 |
41.429078 |
1.818962e-09 |
|
|
|
| XEC.15 |
127 |
13 |
16.658880 |
12.792759 |
16.414482 |
4.930007e-04 |
* |
|
|
| XEC.4 |
192 |
13 |
16.214163 |
-0.176046 |
42.352092 |
1.148281e-09 |
|
|
|
| XEC.38 |
34 |
13 |
16.166447 |
-0.223762 |
42.447523 |
1.092278e-09 |
|
|
|
| XEC.5 |
126 |
13 |
16.154980 |
-0.235229 |
42.470458 |
1.081410e-09 |
|
|
|
| XEC.29 |
135 |
13 |
16.145763 |
-14.241346 |
70.482691 |
8.947387e-16 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
240.728994 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
17 |
235.479842 |
235.479842 |
-194.959684 |
5.247518e-03 |
* |
* |
|
| XEC.9 |
305 |
1 |
234.887699 |
222.983003 |
-169.966006 |
1.965370e-08 |
|
|
|
| XEC.8 |
592 |
17 |
233.875257 |
233.875257 |
-191.750513 |
1.054172e-03 |
* |
* |
|
| XEC.24 |
11 |
17 |
233.201528 |
233.201528 |
-190.403057 |
5.367383e-04 |
* |
* |
|
| KP.3.3 |
1715 |
1 |
232.968479 |
227.277504 |
-178.555008 |
1.441250e-06 |
|
|
|
| XEC.19 |
59 |
17 |
230.227296 |
230.227296 |
-184.454592 |
2.739911e-05 |
* |
* |
|
| XEC.29 |
135 |
17 |
230.104987 |
230.104987 |
-184.209974 |
2.430083e-05 |
* |
* |
|
| XEC.32 |
42 |
17 |
226.488887 |
226.488887 |
-176.977773 |
6.541037e-07 |
|
* |
|
| XEC.4 |
192 |
17 |
225.813698 |
225.813698 |
-175.627397 |
3.330411e-07 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2139_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5619_T|C, 6183_A|G, 6651_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15239_A|G, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18166_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21575_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28090_G|A, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28744_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): Japan/BRL25-0126/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.3.1.1 + XEC.2 | BC BR: 16-17 | BC BR coord: 6725 - 6726 |
| Direction L1: << | Initial region span: 1-16,17-145 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.25e-04 | |
| Rec. model vs L1: 3.40e-59 | Rec. model vs L2: 1.51e-36 | |
| Flags: Model_1BP_Best | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
16 |
13.453707 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.12 |
39 |
4 |
11.473441 |
-33.806928 |
103.613855 |
2.987052e-21 |
|
|
|
| KP.2.3 |
4440 |
15 |
10.689706 |
9.973545 |
16.052910 |
3.080741e-02 |
* |
* |
|
| XEC.25 |
13 |
4 |
10.111699 |
-9.527962 |
55.055924 |
1.041697e-10 |
|
|
|
| JN.1.68 |
34 |
4 |
8.021822 |
-27.964864 |
91.929728 |
1.026887e-18 |
|
|
|
| KR.1.1 |
33 |
4 |
8.019008 |
-35.151576 |
106.303153 |
7.782457e-22 |
|
|
|
| MM.1 |
35 |
4 |
7.993700 |
-27.961349 |
91.922699 |
1.032034e-18 |
|
|
|
| JN.1.21 |
60 |
4 |
7.466884 |
-28.459178 |
92.918356 |
6.259603e-19 |
|
|
|
| KP.2.3.12 |
62 |
4 |
7.450901 |
-28.491421 |
92.982842 |
6.074604e-19 |
|
|
|
| JN.1.7.5 |
427 |
4 |
7.071349 |
-28.873509 |
93.747017 |
4.133468e-19 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
258.708890 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
17 |
234.560626 |
234.560626 |
-191.121253 |
3.249288e-11 |
|
* |
|
| XEC.2.1 |
265 |
32 |
233.050773 |
226.790232 |
-175.580464 |
1.371893e-14 |
|
|
|
| XEC.25 |
13 |
32 |
231.353103 |
228.256642 |
-178.513284 |
5.936925e-14 |
|
|
|
| XEC.36 |
30 |
17 |
229.431970 |
229.431970 |
-180.863940 |
1.922461e-13 |
|
* |
|
| XEC.30 |
135 |
12 |
228.578389 |
215.759121 |
-153.518241 |
2.223576e-19 |
|
|
|
| XEC.2.2.1 |
46 |
32 |
227.987263 |
223.737566 |
-169.475131 |
6.497136e-16 |
|
|
|
| XEC.18 |
165 |
17 |
227.715961 |
227.715961 |
-177.431922 |
3.459733e-14 |
|
* |
|
| XEC.8 |
592 |
12 |
225.968956 |
215.984782 |
-153.969565 |
2.784635e-19 |
|
|
|
| XEC.39 |
155 |
17 |
225.561198 |
225.561198 |
-173.122397 |
4.009940e-15 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1102_C|T, 1267_C|T, 2060_G|A, 2790_C|T, 2937_C|T, 3037_C|T, 3431_G|T, 3466_T|C, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6720_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10576_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12488_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16650_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22003_A|T, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25916_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): Japan/BRL25-0174/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.15 + XEL.3 | BC BR: 142-143 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-142,143-145 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.28e-09 | Rec. model vs L2: 8.18e-101 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.15 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.15 |
127 |
142 |
243.035646 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
145 |
239.305318 |
234.515502 |
-163.031005 |
1.994394e-04 |
* |
|
|
| XEC.6 |
45 |
142 |
236.972112 |
236.972112 |
-167.944224 |
2.322758e-03 |
* |
* |
|
| XEC.4 |
192 |
142 |
236.239126 |
236.239126 |
-166.478253 |
1.119358e-03 |
* |
* |
|
| XEC.14 |
193 |
142 |
234.315089 |
234.315089 |
-162.630177 |
1.632872e-04 |
* |
* |
|
| XEC.39 |
155 |
142 |
234.015280 |
234.015280 |
-162.030560 |
1.209661e-04 |
* |
* |
|
| XEC.8 |
592 |
142 |
232.155677 |
232.155677 |
-158.311355 |
1.883112e-05 |
* |
* |
|
| XEC.2 |
921 |
145 |
231.328886 |
228.827610 |
-151.655220 |
6.774026e-07 |
|
|
|
| XEC.36 |
30 |
142 |
227.262810 |
227.262810 |
-148.525620 |
1.416368e-07 |
|
* |
|
| XEC.38 |
34 |
142 |
226.820595 |
226.820595 |
-147.641190 |
9.076428e-08 |
|
* |
|
| |||||
XEL.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEL.3 |
10 |
143 |
8.355316 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEL.4 |
10 |
143 |
8.355316 |
8.355316 |
-10.710631 |
1.000000 |
* |
* |
|
| XEL.5 |
19 |
143 |
8.301248 |
8.301248 |
-10.602497 |
0.946485 |
* |
* |
|
| LL.1 |
45 |
143 |
8.212215 |
8.212215 |
-10.424429 |
0.865022 |
* |
* |
|
| BA.3 |
31 |
143 |
8.082593 |
8.082593 |
-10.165185 |
0.763379 |
* |
* |
|
| JN.1.4.2 |
736 |
143 |
8.047264 |
8.047264 |
-10.094527 |
0.733447 |
* |
* |
|
| BA.3.1 |
40 |
143 |
7.924533 |
7.924533 |
-9.849065 |
0.650509 |
* |
* |
|
| XBB.1.5.54 |
21 |
143 |
7.795700 |
7.795700 |
-9.591400 |
0.571209 |
* |
* |
|
| FL.14 |
29 |
143 |
7.660979 |
7.660979 |
-9.321957 |
0.499074 |
* |
* |
|
| BE.5 |
231 |
143 |
7.550774 |
7.550774 |
-9.101548 |
0.447088 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3430_A|G, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11956_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16332_C|T,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18804_C|T, 18894_C|T, 18962_C|A, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26176_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28009_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29311_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): OZ247414
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.36 + XEC.14 | BC BR: 5-6 | BC BR coord: 1472 - 1473 |
| Direction L1: << | Initial region span: 1-5,6-143 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.02e-01 | |
| Rec. model vs L1: 2.37e-15 | Rec. model vs L2: 1.55e-17 | |
| Flags: Model_1BP_Best | | |
XEC.36 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.36 |
30 |
5 |
12.056909 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.4.2.4 |
22 |
5 |
10.642513 |
10.642513 |
-11.285026 |
0.244143 |
* |
* |
|
| KP.4 |
35 |
5 |
9.713902 |
9.713902 |
-9.427804 |
0.096328 |
* |
* |
|
| XEC.31 |
66 |
5 |
8.884757 |
8.884757 |
-7.769514 |
0.042004 |
* |
* |
|
| LF.1.1.1 |
109 |
5 |
8.657713 |
8.657713 |
-7.315425 |
0.033541 |
* |
* |
|
| KP.3.2.1 |
70 |
5 |
8.495540 |
8.495540 |
-6.991080 |
0.028439 |
* |
* |
|
| LB.1.8 |
114 |
5 |
8.399290 |
8.399290 |
-6.798581 |
0.025861 |
* |
* |
|
| KW.1.1 |
127 |
5 |
8.282270 |
8.282270 |
-6.564540 |
0.022937 |
* |
* |
|
| JN.1.53 |
62 |
5 |
8.043243 |
8.043243 |
-6.086486 |
0.018133 |
* |
* |
|
| MC.10 |
221 |
5 |
7.961161 |
7.961161 |
-5.922322 |
0.016656 |
* |
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
6 |
246.955256 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.25 |
13 |
6 |
246.630563 |
246.630563 |
-187.261126 |
7.225274e-01 |
* |
* |
|
| XEC.33 |
169 |
6 |
238.915123 |
238.915123 |
-171.830246 |
3.223090e-04 |
* |
* |
|
| XEC.36 |
30 |
1 |
238.541006 |
226.484097 |
-146.968194 |
1.288226e-09 |
|
|
|
| XEC.18 |
165 |
6 |
238.396306 |
238.396306 |
-170.792612 |
1.916193e-04 |
* |
* |
|
| XEC.39 |
155 |
6 |
236.968445 |
236.968445 |
-167.936890 |
4.608606e-05 |
* |
* |
|
| KP.3.3 |
1715 |
1 |
236.200410 |
231.098196 |
-156.196392 |
1.300951e-07 |
|
|
|
| XEC.15 |
127 |
6 |
236.172759 |
236.172759 |
-166.345517 |
2.081160e-05 |
* |
* |
|
| XEC.29 |
135 |
6 |
234.936926 |
234.936926 |
-163.873852 |
6.022549e-06 |
|
* |
|
| XEC.5 |
126 |
6 |
233.940272 |
233.940272 |
-161.880545 |
2.226677e-06 |
|
* |
|
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1471_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14119_C|T, 14408_C|T, 15267_A|G, 15668_A|C, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22002_A|T, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26151_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27792_27793, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ247419
| Target: 5350 samples | Number of changes: 147 | |
| BC: XFB.3 + XEC.18 | BC BR: 6-7 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-6,10-147 | Gap history (edge excluded): 6-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.01e-208 | Rec. model vs L2: 8.23e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XFB.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFB.3 |
56 |
6 |
13.391693 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.28.1 |
10 |
6 |
13.318834 |
13.318834 |
-14.637668 |
0.932394 |
* |
* |
|
| PG.3 |
31 |
6 |
13.219092 |
13.219092 |
-14.438183 |
0.843665 |
* |
* |
|
| KS.1.1 |
52 |
6 |
12.128262 |
12.128262 |
-12.256524 |
0.283654 |
* |
* |
|
| BA.2.86 |
38 |
6 |
11.790418 |
11.790418 |
-11.580836 |
0.201897 |
* |
* |
|
| MU.1 |
173 |
6 |
11.716817 |
11.716817 |
-11.433633 |
0.187308 |
* |
* |
|
| KP.3.1.10 |
51 |
6 |
11.585726 |
11.585726 |
-11.171452 |
0.164474 |
* |
* |
|
| XFG.1 |
14 |
6 |
11.498487 |
11.498487 |
-10.996974 |
0.151072 |
* |
* |
|
| ML.2 |
67 |
6 |
11.494581 |
11.494581 |
-10.989162 |
0.150318 |
* |
* |
|
| KP.2.14 |
169 |
6 |
11.461630 |
11.461630 |
-10.923260 |
0.145148 |
* |
* |
|
| |||||
XEC.18 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
10 |
240.561198 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
9 |
236.972216 |
216.972216 |
-125.944432 |
5.170273e-05 |
* |
* |
|
| XEC.4 |
192 |
8 |
235.278602 |
225.278602 |
-142.557204 |
2.101361e-01 |
* |
|
|
| KP.3.3 |
1715 |
10 |
229.721022 |
211.450626 |
-114.901253 |
2.071133e-07 |
|
* |
|
| XEC.14 |
193 |
10 |
229.647497 |
215.933898 |
-123.867796 |
1.836617e-05 |
* |
* |
|
| XEC.5 |
126 |
10 |
228.135490 |
214.421891 |
-120.843782 |
4.037035e-06 |
|
* |
|
| XEC.32 |
42 |
10 |
228.130308 |
214.416709 |
-120.833417 |
4.016900e-06 |
|
* |
|
| XEC.25 |
13 |
10 |
227.591618 |
213.878019 |
-119.756038 |
2.352575e-06 |
|
* |
|
| XEC.40 |
52 |
10 |
226.203093 |
204.852785 |
-101.705569 |
2.831626e-10 |
|
* |
|
| XEC.9 |
305 |
18 |
226.158126 |
210.388808 |
-112.777615 |
7.175560e-08 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 222_C|T, 241_C|T, 670_T|G, 897_C|A, 1959_C|T, 2060_G|A, 2445_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6027_C|T, 6183_A|G, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10171_A|G, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18761_T|C, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20670_G|A, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21635_21643, 21711_C|T, 21738_T|C, 21765_21770, 21938_G|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T,
25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ247681
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.8 + LF.4 | BC BR: 143-144 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-143,144-146 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.20e-09 | Rec. model vs L2: 2.73e-106 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
143 |
238.622056 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
143 |
231.685222 |
231.685222 |
-149.370444 |
9.731231e-04 |
* |
* |
|
| XEC.18 |
165 |
143 |
230.691897 |
230.691897 |
-147.383793 |
3.597864e-04 |
* |
* |
|
| XEC.2 |
921 |
143 |
227.962222 |
227.962222 |
-141.924445 |
2.346501e-05 |
* |
* |
|
| XEC.5 |
126 |
143 |
223.670048 |
223.670048 |
-133.340096 |
3.215863e-07 |
|
* |
|
| XEC.6 |
45 |
143 |
223.380486 |
223.380486 |
-132.760973 |
2.406313e-07 |
|
* |
|
| XEC.14 |
193 |
143 |
221.996638 |
221.996638 |
-129.993277 |
6.023574e-08 |
|
* |
|
| KP.3.3 |
1715 |
143 |
219.297734 |
219.297734 |
-124.595468 |
4.068465e-09 |
|
* |
|
| XEC.32 |
42 |
143 |
217.295479 |
217.295479 |
-120.590957 |
5.478607e-10 |
|
* |
|
| XEC.33 |
169 |
143 |
217.160740 |
217.160740 |
-120.321479 |
4.786746e-10 |
|
* |
|
| |||||
LF.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.4 |
38 |
144 |
9.420716 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.4.1 |
50 |
144 |
9.412908 |
9.412908 |
-12.825815 |
0.995012 |
* |
* |
|
| LF.9 |
48 |
144 |
7.500702 |
7.500702 |
-9.001404 |
0.146607 |
* |
* |
|
| CH.1.1.7 |
39 |
144 |
7.117473 |
7.117473 |
-8.234946 |
0.099759 |
* |
* |
|
| PF.1 |
19 |
144 |
6.476277 |
6.476277 |
-6.952554 |
0.052602 |
* |
* |
|
| MC.1.3 |
51 |
144 |
5.439773 |
5.439773 |
-4.879546 |
0.018686 |
* |
* |
|
| BA.5.2.37 |
108 |
144 |
4.587857 |
4.587857 |
-3.175715 |
0.007987 |
* |
* |
|
| XBB.1.5.4 |
683 |
144 |
4.155477 |
4.155477 |
-2.310954 |
0.005169 |
* |
* |
|
| LB.1.2 |
199 |
144 |
3.950768 |
3.950768 |
-1.901537 |
0.004211 |
* |
* |
|
| XBB.1.5.17 |
1117 |
144 |
3.439656 |
3.439656 |
-0.879311 |
0.002529 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3179_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5884_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15240_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 17676_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19018_C|T, 19716_C|T, 19806_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24821_G|T, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25186_G|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29427_G|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ247716
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.30 + XEC.2 | BC BR: 17-18 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-15,21-147 | Gap history (edge excluded): 15-21 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 8.48e-01 | |
| Rec. model vs L1: 3.41e-20 | Rec. model vs L2: 2.42e-19 | |
| Flags: Model_1BP_Best | | |
XEC.30 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.30 |
135 |
15 |
21.876803 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
19 |
21.168534 |
15.731465 |
10.537071 |
1.284025e+00 |
* |
|
|
| XEC.35.1 |
28 |
13 |
17.890032 |
5.102766 |
31.794468 |
3.120288e-05 |
* |
|
|
| XEC.23 |
142 |
13 |
17.704623 |
-0.170696 |
42.341391 |
1.596950e-07 |
|
|
|
| XEC.4.7 |
13 |
13 |
17.629701 |
-4.145893 |
50.291787 |
2.998961e-09 |
|
|
|
| XEC.17 |
13 |
13 |
16.675670 |
3.888404 |
34.223192 |
9.258208e-06 |
|
|
|
| XEC.15 |
127 |
13 |
16.658880 |
3.863709 |
34.272583 |
9.029622e-06 |
|
|
|
| XEC.4 |
192 |
13 |
16.214163 |
3.426897 |
35.146206 |
5.815406e-06 |
|
|
|
| XEC.38 |
34 |
13 |
16.166447 |
3.379182 |
35.241637 |
5.559513e-06 |
|
|
|
| XEC.5 |
126 |
13 |
16.154980 |
3.367714 |
35.264572 |
5.504195e-06 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
21 |
246.901961 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.30 |
135 |
7 |
235.757938 |
218.709128 |
-165.418257 |
5.465393e-11 |
|
|
|
| XEC.29 |
135 |
21 |
230.812321 |
226.249974 |
-180.499947 |
1.028494e-07 |
|
* |
|
| XEK.5 |
28 |
21 |
230.675425 |
219.714658 |
-167.429317 |
1.493095e-10 |
|
* |
|
| XEC.8 |
592 |
21 |
221.359337 |
216.796990 |
-161.593980 |
8.052810e-12 |
|
* |
|
| KP.3.3 |
1715 |
7 |
220.898240 |
204.478298 |
-136.956595 |
3.610862e-17 |
|
|
|
| XEC.40 |
52 |
21 |
220.694371 |
216.112605 |
-160.225211 |
4.079690e-12 |
|
* |
|
| XEC.9 |
305 |
21 |
219.695064 |
215.132717 |
-158.265434 |
1.531153e-12 |
|
* |
|
| XEC.14 |
193 |
21 |
219.054517 |
214.492169 |
-156.984339 |
8.033387e-13 |
|
* |
|
| XEC.19 |
59 |
21 |
218.239112 |
213.676764 |
-155.353529 |
3.555893e-13 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1919_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5784_C|T, 6183_A|G, 6238_T|C, 7842_A|G, 8293_C|T, 8393_G|A,
8482_T|C, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12514_G|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24910_T|C, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27005_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28113_A|G, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29614_C|T, 29734_29759
Case 72 (XEC): OZ247800
| Target: 5350 samples | Number of changes: 143 | |
| BC: KP.2.3.10 + XEC.14 | BC BR: 6-7 | BC BR coord: 1701 - 1702 |
| Direction L1: << | Initial region span: 1-6,7-143 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.23e-01 | |
| Rec. model vs L1: 5.66e-148 | Rec. model vs L2: 2.58e-17 | |
| Flags: Model_1BP_Best | | |
KP.2.3.10 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.10 |
10 |
6 |
17.073087 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.2.8 |
26 |
6 |
14.349653 |
14.349653 |
-16.699307 |
6.554620e-02 |
* |
* |
|
| KP.3.1.9 |
26 |
6 |
13.002580 |
13.002580 |
-14.005159 |
1.707739e-02 |
* |
* |
|
| JN.1.18 |
431 |
6 |
11.935967 |
11.935967 |
-11.871935 |
5.857690e-03 |
* |
* |
|
| LF.7.9.3 |
20 |
5 |
11.825673 |
1.825673 |
8.348653 |
2.382370e-07 |
|
* |
|
| XFB.3 |
56 |
5 |
11.670112 |
1.670112 |
8.659776 |
2.040298e-07 |
|
* |
|
| XEL.5 |
19 |
5 |
11.593891 |
1.593891 |
8.812218 |
1.892873e-07 |
|
* |
|
| JN.1.7.2 |
180 |
6 |
11.330096 |
11.330096 |
-10.660192 |
3.198735e-03 |
* |
* |
|
| LC.1 |
10 |
5 |
11.297148 |
1.297148 |
9.405704 |
1.402275e-07 |
|
* |
|
| XEC.35.1 |
28 |
5 |
11.252812 |
1.252812 |
9.494375 |
1.347291e-07 |
|
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
7 |
223.925313 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.38 |
34 |
7 |
220.257510 |
220.257510 |
-144.515020 |
2.560417e-02 |
* |
* |
|
| XEC.4 |
192 |
7 |
219.806277 |
219.806277 |
-143.612555 |
1.624451e-02 |
* |
* |
|
| XEC.9 |
305 |
7 |
218.566509 |
218.566509 |
-141.133019 |
4.700906e-03 |
* |
* |
|
| XEC.6 |
45 |
7 |
216.614248 |
216.614248 |
-137.228496 |
6.688171e-04 |
* |
* |
|
| XEC.8 |
592 |
7 |
216.184348 |
216.184348 |
-136.368696 |
4.350716e-04 |
* |
* |
|
| XEC.30 |
135 |
7 |
215.540663 |
215.540663 |
-135.081326 |
2.282658e-04 |
* |
* |
|
| MC.24.1 |
25 |
7 |
214.884070 |
214.884070 |
-133.768140 |
1.185708e-04 |
* |
* |
|
| XEC.18 |
165 |
7 |
214.665222 |
214.665222 |
-133.330443 |
9.515533e-05 |
* |
* |
|
| XEC.2 |
921 |
13 |
214.265019 |
199.631724 |
-103.263449 |
2.810707e-11 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1686_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11461_C|T, 11727_G|A, 12394_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16200_T|C,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21859_C|A, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25538_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27047_G|A, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ249457
| Target: 5350 samples | Number of changes: 136 | |
| BC: XEC.32 + XEC.2 | BC BR: 14-15 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-14,18-136 | Gap history (edge excluded): 14-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.60e-33 | Rec. model vs L2: 3.03e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
14 |
23.490995 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8.1 |
12 |
13 |
19.955191 |
18.143349 |
-0.286697 |
4.771951e-03 |
* |
* |
|
| KP.3.1.1 |
12013 |
16 |
19.079354 |
16.491100 |
3.017799 |
9.118820e-04 |
* |
|
|
| JN.1 |
17255 |
17 |
15.450465 |
11.922416 |
12.155168 |
9.445237e-06 |
|
|
|
| XEC.25 |
13 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.18.3 |
13 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.16 |
23 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.4.3 |
10 |
12 |
15.079158 |
-7.384864 |
50.769728 |
3.900838e-14 |
|
|
|
| XEC.17 |
13 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.24 |
11 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
18 |
183.586092 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
3 |
171.436813 |
161.767818 |
-43.535636 |
1.557521e-07 |
|
|
|
| XEC.8 |
592 |
3 |
165.653783 |
147.099895 |
-14.199791 |
6.627259e-14 |
|
|
|
| XEC.18 |
165 |
23 |
160.038268 |
138.708116 |
2.583767 |
1.505231e-17 |
|
|
|
| XEC.19 |
59 |
23 |
158.923365 |
137.593213 |
4.813573 |
4.935883e-18 |
|
|
|
| XEC.14 |
193 |
23 |
156.439818 |
135.109667 |
9.780667 |
4.112852e-19 |
|
|
|
| XEC.2.2.1 |
46 |
21 |
153.193672 |
133.112240 |
13.775519 |
5.566140e-20 |
|
|
|
| XEC.36 |
30 |
23 |
152.571772 |
131.241621 |
17.516757 |
8.578739e-21 |
|
|
|
| XEC.11 |
16 |
23 |
152.566485 |
131.236333 |
17.527333 |
8.535953e-21 |
|
|
|
| XEC.2.2 |
273 |
21 |
151.947393 |
131.918804 |
16.162392 |
1.693338e-20 |
|
|
|
|
Target sequence
, 241_C|T, 295_G|A, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7081_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8299_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 9733_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18499_T|C, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20404_C|T, 21711_C|T, 21738_T|C, 21812_C|A, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C,
22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C,
22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24130_C|T, 24378_C|T, 24424_A|T, 24469_T|A,
24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26319_A|G, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29253_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): OZ249462
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.8 + LF.4 | BC BR: 143-144 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-143,144-146 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.17e-09 | Rec. model vs L2: 9.13e-107 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
143 |
237.747480 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
143 |
234.203584 |
234.203584 |
-156.407168 |
2.901333e-02 |
* |
* |
|
| XEC.9 |
305 |
143 |
231.050766 |
231.050766 |
-150.101532 |
1.237082e-03 |
* |
* |
|
| XEC.2 |
921 |
143 |
227.803631 |
227.803631 |
-143.607263 |
4.820730e-05 |
* |
* |
|
| XEC.11 |
16 |
143 |
225.053248 |
225.053248 |
-138.106496 |
3.081790e-06 |
|
* |
|
| XEC.19 |
59 |
143 |
223.566694 |
223.566694 |
-135.133389 |
6.945512e-07 |
|
* |
|
| XEC.6 |
45 |
143 |
223.091103 |
223.091103 |
-134.182207 |
4.319310e-07 |
|
* |
|
| XEC.5 |
126 |
143 |
222.580647 |
222.580647 |
-133.161293 |
2.593727e-07 |
|
* |
|
| XEC.32 |
42 |
143 |
222.487319 |
222.487319 |
-132.974638 |
2.358665e-07 |
|
* |
|
| XEC.14 |
193 |
143 |
221.640518 |
221.640518 |
-131.281037 |
1.013182e-07 |
|
* |
|
| |||||
LF.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.4 |
38 |
144 |
9.420716 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.4.1 |
50 |
144 |
9.412908 |
9.412908 |
-12.825815 |
0.995012 |
* |
* |
|
| LF.9 |
48 |
144 |
7.500702 |
7.500702 |
-9.001404 |
0.146607 |
* |
* |
|
| CH.1.1.7 |
39 |
144 |
7.117473 |
7.117473 |
-8.234946 |
0.099759 |
* |
* |
|
| PF.1 |
19 |
144 |
6.476277 |
6.476277 |
-6.952554 |
0.052602 |
* |
* |
|
| MC.1.3 |
51 |
144 |
5.439773 |
5.439773 |
-4.879546 |
0.018686 |
* |
* |
|
| BA.5.2.37 |
108 |
144 |
4.587857 |
4.587857 |
-3.175715 |
0.007987 |
* |
* |
|
| XBB.1.5.4 |
683 |
144 |
4.155477 |
4.155477 |
-2.310954 |
0.005169 |
* |
* |
|
| LB.1.2 |
199 |
144 |
3.950768 |
3.950768 |
-1.901537 |
0.004211 |
* |
* |
|
| XBB.1.5.17 |
1117 |
144 |
3.439656 |
3.439656 |
-0.879311 |
0.002529 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3179_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5884_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15240_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 17676_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19018_C|T, 19716_C|T, 19806_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24821_G|T, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25186_G|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29427_G|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ249475
| Target: 5350 samples | Number of changes: 144 | |
| BC: XEC.4.3 + XEC.2 | BC BR: 11-12 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-8,12-144 | Gap history (edge excluded): 8-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.61e-06 | |
| Rec. model vs L1: 2.67e-45 | Rec. model vs L2: 1.07e-17 | |
| Flags: Model_1BP_Best | | |
XEC.4.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.3 |
10 |
8 |
19.322509 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.25 |
13 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.32 |
42 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.8.1 |
12 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.18.3 |
13 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.4.1.4 |
23 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.16 |
23 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.17 |
13 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.24 |
11 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.22 |
23 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
12 |
265.769700 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
12 |
240.387585 |
240.387585 |
-194.775169 |
9.497429e-12 |
|
* |
|
| XEC.8 |
592 |
1 |
240.308765 |
228.961356 |
-171.922711 |
1.031858e-16 |
|
|
|
| XEC.33 |
169 |
1 |
236.834593 |
225.437197 |
-164.874394 |
3.039010e-18 |
|
|
|
| KP.3.3 |
1715 |
1 |
236.282739 |
229.445069 |
-172.890138 |
1.675919e-16 |
|
|
|
| XEC.14 |
193 |
3 |
236.121775 |
225.780481 |
-165.560963 |
4.291051e-18 |
|
|
|
| XEC.9 |
305 |
1 |
230.573627 |
219.187445 |
-152.374889 |
5.866669e-21 |
|
|
|
| XEC.31 |
66 |
1 |
225.493343 |
221.992796 |
-157.985593 |
9.744489e-20 |
|
|
|
| XEC.2.1 |
265 |
13 |
224.451157 |
214.451157 |
-142.902314 |
5.152372e-23 |
|
* |
|
| XEC.15 |
127 |
1 |
222.740260 |
211.368779 |
-136.737558 |
2.367992e-24 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3914_G|A, 4184_G|A, 4321_C|T, 5178_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11866_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 17795_C|T,
18084_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20405_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29020_A|G, 29353_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): OZ249692
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.8 + LF.4 | BC BR: 142-143 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-142,143-145 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.17e-09 | Rec. model vs L2: 4.09e-106 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
142 |
241.280891 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
142 |
234.806936 |
234.806936 |
-159.613871 |
1.541499e-03 |
* |
* |
|
| XEC.18 |
165 |
142 |
233.998499 |
233.998499 |
-157.996998 |
6.891856e-04 |
* |
* |
|
| XEC.2 |
921 |
142 |
231.443793 |
231.443793 |
-152.887587 |
5.354436e-05 |
* |
* |
|
| XEC.6 |
45 |
142 |
226.502137 |
226.502137 |
-143.004274 |
3.811778e-07 |
|
* |
|
| XEC.5 |
126 |
142 |
226.202825 |
226.202825 |
-142.405649 |
2.837989e-07 |
|
* |
|
| XEC.14 |
193 |
142 |
225.194061 |
225.194061 |
-140.388122 |
1.033649e-07 |
|
* |
|
| XEC.32 |
42 |
142 |
222.757859 |
222.757859 |
-135.515719 |
9.054536e-09 |
|
* |
|
| KP.3.3 |
1715 |
142 |
221.914177 |
221.914177 |
-133.828354 |
3.889443e-09 |
|
* |
|
| XEC.33 |
169 |
142 |
220.912909 |
220.912909 |
-131.825818 |
1.430846e-09 |
|
* |
|
| |||||
LF.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.4 |
38 |
143 |
9.420716 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.4.1 |
50 |
143 |
9.412908 |
9.412908 |
-12.825815 |
0.995012 |
* |
* |
|
| LF.9 |
48 |
143 |
7.500702 |
7.500702 |
-9.001404 |
0.146607 |
* |
* |
|
| CH.1.1.7 |
39 |
143 |
7.117473 |
7.117473 |
-8.234946 |
0.099759 |
* |
* |
|
| PF.1 |
19 |
143 |
6.476277 |
6.476277 |
-6.952554 |
0.052602 |
* |
* |
|
| MC.1.3 |
51 |
143 |
5.439773 |
5.439773 |
-4.879546 |
0.018686 |
* |
* |
|
| BA.5.2.37 |
108 |
143 |
4.587857 |
4.587857 |
-3.175715 |
0.007987 |
* |
* |
|
| XBB.1.5.4 |
683 |
143 |
4.155477 |
4.155477 |
-2.310954 |
0.005169 |
* |
* |
|
| LB.1.2 |
199 |
143 |
3.950768 |
3.950768 |
-1.901537 |
0.004211 |
* |
* |
|
| XBB.1.5.17 |
1117 |
143 |
3.439656 |
3.439656 |
-0.879311 |
0.002529 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3179_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5884_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15240_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 17676_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19018_C|T, 19716_C|T, 19806_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24821_G|T, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25186_G|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29427_G|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ249699
| Target: 5350 samples | Number of changes: 135 | |
| BC: XEC.32 + XEC.2 | BC BR: 14-15 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-14,18-135 | Gap history (edge excluded): 14-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.56e-33 | Rec. model vs L2: 3.03e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
14 |
23.490995 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8.1 |
12 |
13 |
19.955191 |
18.143349 |
-0.286697 |
4.771951e-03 |
* |
* |
|
| KP.3.1.1 |
12013 |
16 |
19.079354 |
16.491100 |
3.017799 |
9.118820e-04 |
* |
|
|
| JN.1 |
17255 |
17 |
15.450465 |
11.922416 |
12.155168 |
9.445237e-06 |
|
|
|
| XEC.25 |
13 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.18.3 |
13 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.16 |
23 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.4.3 |
10 |
12 |
15.079158 |
-7.384864 |
50.769728 |
3.900838e-14 |
|
|
|
| XEC.17 |
13 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| XEC.24 |
11 |
12 |
15.079158 |
8.682101 |
18.635797 |
3.699123e-07 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
18 |
180.051805 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
3 |
167.916458 |
158.247464 |
-36.494927 |
1.573175e-07 |
|
|
|
| XEC.8 |
592 |
3 |
162.113193 |
143.559305 |
-7.118611 |
6.594205e-14 |
|
|
|
| XEC.18 |
165 |
23 |
156.527608 |
135.197456 |
9.605087 |
1.535639e-17 |
|
|
|
| XEC.19 |
59 |
23 |
155.376006 |
134.045855 |
11.908289 |
4.862398e-18 |
|
|
|
| XEC.14 |
193 |
23 |
152.913293 |
131.583142 |
16.833716 |
4.154187e-19 |
|
|
|
| XEC.2.2.1 |
46 |
21 |
149.690271 |
129.608840 |
20.782320 |
5.764405e-20 |
|
|
|
| XEC.36 |
30 |
23 |
149.162400 |
127.832249 |
24.335502 |
9.720985e-21 |
|
|
|
| XEC.11 |
16 |
23 |
149.019126 |
127.688975 |
24.622050 |
8.451018e-21 |
|
|
|
| XEC.2.2 |
273 |
21 |
148.407374 |
128.378785 |
23.242430 |
1.684893e-20 |
|
|
|
|
Target sequence
, 241_C|T, 295_G|A, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7081_C|T, 7842_A|G, 7869_C|T, 8293_C|T, 8299_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 9733_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18499_T|C, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20404_C|T, 21711_C|T, 21738_T|C, 21812_C|A, 21941_G|T, 21987_G|A, 22032_T|C, 22033_C|A,
22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T,
22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24130_C|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T,
24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26319_A|G, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29253_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): OZ249708
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.8 + LF.4 | BC BR: 143-144 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-143,144-146 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.17e-09 | Rec. model vs L2: 9.89e-107 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
143 |
237.685831 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
143 |
234.195624 |
234.195624 |
-156.391248 |
3.050087e-02 |
* |
* |
|
| XEC.9 |
305 |
143 |
231.170660 |
231.170660 |
-150.341319 |
1.481056e-03 |
* |
* |
|
| XEC.2 |
921 |
143 |
227.791937 |
227.791937 |
-143.583873 |
5.042618e-05 |
* |
* |
|
| XEC.11 |
16 |
143 |
225.357131 |
225.357131 |
-138.714262 |
4.417220e-06 |
|
* |
|
| XEC.19 |
59 |
143 |
223.550187 |
223.550187 |
-135.100374 |
7.265199e-07 |
|
* |
|
| XEC.6 |
45 |
143 |
223.208806 |
223.208806 |
-134.417611 |
5.171153e-07 |
|
* |
|
| XEC.5 |
126 |
143 |
222.598328 |
222.598328 |
-133.196656 |
2.809750e-07 |
|
* |
|
| XEC.32 |
42 |
143 |
222.505001 |
222.505001 |
-133.010001 |
2.555111e-07 |
|
* |
|
| XEC.14 |
193 |
143 |
221.669661 |
221.669661 |
-131.339323 |
1.108597e-07 |
|
* |
|
| |||||
LF.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.4 |
38 |
144 |
9.420716 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.4.1 |
50 |
144 |
9.412908 |
9.412908 |
-12.825815 |
0.995012 |
* |
* |
|
| LF.9 |
48 |
144 |
7.500702 |
7.500702 |
-9.001404 |
0.146607 |
* |
* |
|
| CH.1.1.7 |
39 |
144 |
7.117473 |
7.117473 |
-8.234946 |
0.099759 |
* |
* |
|
| PF.1 |
19 |
144 |
6.476277 |
6.476277 |
-6.952554 |
0.052602 |
* |
* |
|
| MC.1.3 |
51 |
144 |
5.439773 |
5.439773 |
-4.879546 |
0.018686 |
* |
* |
|
| BA.5.2.37 |
108 |
144 |
4.587857 |
4.587857 |
-3.175715 |
0.007987 |
* |
* |
|
| XBB.1.5.4 |
683 |
144 |
4.155477 |
4.155477 |
-2.310954 |
0.005169 |
* |
* |
|
| LB.1.2 |
199 |
144 |
3.950768 |
3.950768 |
-1.901537 |
0.004211 |
* |
* |
|
| XBB.1.5.17 |
1117 |
144 |
3.439656 |
3.439656 |
-0.879311 |
0.002529 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3179_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5884_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15240_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 17676_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19018_C|T, 19716_C|T, 19806_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24821_G|T, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25186_G|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29427_G|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ249750
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.8 + LF.4 | BC BR: 144-145 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-144,145-147 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.20e-09 | Rec. model vs L2: 3.56e-106 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
144 |
245.806625 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
144 |
238.969082 |
238.969082 |
-163.938164 |
1.075467e-03 |
* |
* |
|
| XEC.18 |
165 |
144 |
238.014630 |
238.014630 |
-162.029260 |
4.138529e-04 |
* |
* |
|
| XEC.2 |
921 |
144 |
235.155612 |
235.155612 |
-156.311225 |
2.370084e-05 |
* |
* |
|
| XEC.5 |
126 |
144 |
230.952438 |
230.952438 |
-147.904877 |
3.536352e-07 |
|
* |
|
| XEC.6 |
45 |
144 |
230.642080 |
230.642080 |
-147.284159 |
2.593727e-07 |
|
* |
|
| XEC.14 |
193 |
144 |
229.248604 |
229.248604 |
-144.497208 |
6.460332e-08 |
|
* |
|
| KP.3.3 |
1715 |
144 |
226.545771 |
226.545771 |
-139.091542 |
4.320045e-09 |
|
* |
|
| XEC.32 |
42 |
144 |
224.743253 |
224.743253 |
-135.486505 |
7.140986e-10 |
|
* |
|
| XEC.33 |
169 |
144 |
224.356609 |
224.356609 |
-134.713217 |
4.834854e-10 |
|
* |
|
| |||||
LF.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.4 |
38 |
145 |
9.420716 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.4.1 |
50 |
145 |
9.412908 |
9.412908 |
-12.825815 |
0.995012 |
* |
* |
|
| LF.9 |
48 |
145 |
7.500702 |
7.500702 |
-9.001404 |
0.146607 |
* |
* |
|
| CH.1.1.7 |
39 |
145 |
7.117473 |
7.117473 |
-8.234946 |
0.099759 |
* |
* |
|
| PF.1 |
19 |
145 |
6.476277 |
6.476277 |
-6.952554 |
0.052602 |
* |
* |
|
| MC.1.3 |
51 |
145 |
5.439773 |
5.439773 |
-4.879546 |
0.018686 |
* |
* |
|
| BA.5.2.37 |
108 |
145 |
4.587857 |
4.587857 |
-3.175715 |
0.007987 |
* |
* |
|
| XBB.1.5.4 |
683 |
145 |
4.155477 |
4.155477 |
-2.310954 |
0.005169 |
* |
* |
|
| LB.1.2 |
199 |
145 |
3.950768 |
3.950768 |
-1.901537 |
0.004211 |
* |
* |
|
| XBB.1.5.17 |
1117 |
145 |
3.439656 |
3.439656 |
-0.879311 |
0.002529 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3179_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5884_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15240_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 17676_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19018_C|T, 19716_C|T, 19806_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24821_G|T, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25186_G|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29427_G|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ252346
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.3.3 + XEC.30 | BC BR: 8-9 | BC BR coord: 2060 - 2061 |
| Direction L1: << | Initial region span: 1-8,10-145 | Gap history (edge excluded): 8-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.50e-01 | |
| Rec. model vs L1: 4.35e-23 | Rec. model vs L2: 1.08e-10 | |
| Flags: Model_1BP_Best | | |
KP.3.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
8 |
13.882190 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.17 |
13 |
8 |
9.973636 |
9.973636 |
4.052727 |
2.014095e-02 |
* |
* |
|
| JN.1 |
17255 |
7 |
8.909044 |
-1.090956 |
26.181912 |
3.152184e-07 |
|
* |
|
| KP.3.1.1 |
12013 |
7 |
8.902425 |
5.795081 |
12.409837 |
3.081265e-04 |
* |
* |
|
| XEC.29 |
135 |
8 |
7.818912 |
7.818912 |
8.362177 |
2.334401e-03 |
* |
* |
|
| LF.7.9.3 |
20 |
3 |
7.111420 |
-18.174327 |
60.348653 |
1.198644e-14 |
|
|
|
| XFB.3 |
56 |
3 |
6.955858 |
-18.329888 |
60.659776 |
1.026537e-14 |
|
|
|
| NY.12.1 |
17 |
3 |
6.912387 |
-36.265998 |
96.531996 |
1.668412e-22 |
|
|
|
| XEL.5 |
19 |
3 |
6.879637 |
-29.632125 |
83.264250 |
1.270127e-19 |
|
|
|
| MC.13.2.4 |
37 |
3 |
6.742160 |
-26.379166 |
76.758332 |
3.275700e-18 |
|
|
|
| |||||
XEC.30 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.30 |
135 |
10 |
251.173011 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
10 |
244.536353 |
234.536353 |
-173.072705 |
1.307027e-03 |
* |
* |
|
| XEC.2 |
921 |
17 |
244.451479 |
227.052361 |
-158.104723 |
7.338215e-07 |
|
|
|
| XEC.9 |
305 |
18 |
241.134674 |
229.078955 |
-162.157909 |
5.587380e-06 |
|
|
|
| XEC.40 |
52 |
10 |
240.941351 |
223.304642 |
-150.609284 |
1.734433e-08 |
|
* |
|
| XEC.18 |
165 |
10 |
239.301526 |
229.301526 |
-162.603052 |
6.962305e-06 |
|
* |
|
| XEC.6 |
45 |
10 |
238.641398 |
228.641398 |
-161.282797 |
3.598476e-06 |
|
* |
|
| XEC.39 |
155 |
10 |
238.510654 |
228.510654 |
-161.021308 |
3.159806e-06 |
|
* |
|
| XEC.17 |
13 |
5 |
238.147982 |
223.385214 |
-150.770428 |
1.878889e-08 |
|
|
|
| XEC.31 |
66 |
28 |
237.758381 |
217.468768 |
-138.937537 |
5.070483e-11 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 505_T|C, 670_T|G, 897_C|A, 934_C|T, 2060_G|A, 2504_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6023_T|C, 6183_A|G, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 9995_T|G, 10029_C|T, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
14123_G|A, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27198_A|G, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ252347
| Target: 5350 samples | Number of changes: 144 | |
| BC: KP.3.3 + XEC.2 | BC BR: 16-17 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-16,18-144 | Gap history (edge excluded): 16-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.36e-05 | |
| Rec. model vs L1: 1.51e-17 | Rec. model vs L2: 5.74e-22 | |
| Flags: Model_1BP_Best | | |
KP.3.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
16 |
12.726113 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.2 |
28 |
4 |
10.921530 |
-14.010545 |
62.021089 |
2.449836e-12 |
|
|
|
| JN.1.11 |
43 |
4 |
10.145369 |
-14.868558 |
63.737115 |
1.036678e-12 |
|
|
|
| KP.2.3 |
4440 |
7 |
10.132628 |
9.468492 |
15.063016 |
3.858082e-02 |
* |
|
|
| LF.7.1 |
165 |
4 |
9.226868 |
-15.643625 |
65.287249 |
4.776014e-13 |
|
|
|
| JN.1.4.5 |
1757 |
6 |
8.072072 |
-4.415975 |
42.831951 |
3.599089e-08 |
|
|
|
| JN.1 |
17255 |
7 |
7.743457 |
5.044672 |
23.910656 |
4.619749e-04 |
* |
|
|
| LF.7.9.3 |
20 |
3 |
7.111420 |
-27.933323 |
89.866646 |
2.195768e-18 |
|
|
|
| MC.24 |
831 |
4 |
7.069973 |
2.141111 |
29.717778 |
2.529257e-05 |
* |
|
|
| XFB.3 |
56 |
3 |
6.955858 |
-27.939849 |
89.879698 |
2.184816e-18 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
18 |
243.046368 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
18 |
232.046389 |
222.046389 |
-158.092777 |
1.670170e-05 |
* |
* |
|
| XEC.29 |
135 |
19 |
225.501038 |
205.113930 |
-124.227859 |
7.415751e-13 |
|
* |
|
| KP.3.3 |
1715 |
6 |
225.237159 |
208.483904 |
-130.967809 |
2.156391e-11 |
|
|
|
| XEC.9 |
305 |
19 |
221.541225 |
209.068200 |
-132.136401 |
3.870703e-11 |
|
* |
|
| XEC.13 |
30 |
18 |
218.276296 |
208.276296 |
-130.552592 |
1.747937e-11 |
|
* |
|
| XEC.2.2.1 |
46 |
18 |
217.929696 |
207.929696 |
-129.859392 |
1.237924e-11 |
|
* |
|
| XEC.39 |
155 |
6 |
216.164865 |
203.719601 |
-121.439202 |
1.837868e-13 |
|
|
|
| XEC.8 |
592 |
18 |
215.072311 |
205.072311 |
-124.144621 |
7.089439e-13 |
|
* |
|
| XEC.14 |
193 |
7 |
214.703812 |
203.549114 |
-121.098227 |
1.550545e-13 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 547_C|T, 616_T|C, 670_T|G, 897_C|A, 936_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3602_C|T, 4184_G|A, 4321_C|T, 5192_C|A, 6183_A|G, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18131_C|T, 18163_A|G, 18488_T|C, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20451_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25162_C|T, 25207_C|T, 25521_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ252376
| Target: 5350 samples | Number of changes: 142 | |
| BC: XFG.3 + XEC.17 | BC BR: 8-9 | BC BR coord: 899 - 900 |
| Direction L1: << | Initial region span: 1-8,9-142 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.15e-03 | |
| Rec. model vs L1: 2.89e-244 | Rec. model vs L2: 4.34e-11 | |
| Flags: Model_1BP_Best | | |
XFG.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFG.3 |
480 |
8 |
14.594840 |
NaN |
NaN |
NaN |
* |
* |
* |
| KS.1.1.2 |
252 |
7 |
10.984879 |
0.984879 |
14.030243 |
1.228152e-06 |
|
* |
|
| BA.2.86.1 |
1343 |
8 |
10.710812 |
10.710812 |
-5.421625 |
2.054783e-02 |
* |
* |
|
| MC.35 |
258 |
7 |
10.586893 |
0.586893 |
14.826214 |
8.232549e-07 |
|
* |
|
| KP.3.1.4 |
511 |
7 |
10.375968 |
0.375968 |
15.248065 |
6.673174e-07 |
|
* |
|
| MC.16 |
917 |
7 |
8.838234 |
-1.161766 |
18.323532 |
1.437773e-07 |
|
* |
|
| XEC.17 |
13 |
4 |
8.775898 |
-6.509849 |
29.019697 |
6.826765e-10 |
|
|
|
| KP.3.1.1 |
12013 |
8 |
8.745007 |
8.745007 |
-1.490014 |
2.879899e-03 |
* |
* |
|
| JN.1.64.1 |
14 |
4 |
8.594396 |
-6.999652 |
29.999304 |
4.182256e-10 |
|
|
|
| KP.2.2 |
1334 |
7 |
8.324334 |
-1.675666 |
19.351332 |
8.590704e-08 |
|
* |
|
| |||||
XEC.17 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.17 |
13 |
9 |
236.871490 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
9 |
224.706822 |
224.706822 |
-155.413644 |
5.209639e-06 |
|
* |
|
| XEC.38 |
34 |
9 |
221.024500 |
221.024500 |
-148.048999 |
1.314026e-07 |
|
* |
|
| XEC.4 |
192 |
9 |
220.545730 |
220.545730 |
-147.091460 |
8.130974e-08 |
|
* |
|
| XEC.9 |
305 |
9 |
219.306120 |
219.306120 |
-144.612240 |
2.352976e-08 |
|
* |
|
| XEC.6 |
45 |
9 |
217.413891 |
217.413891 |
-140.827781 |
3.554683e-09 |
|
* |
|
| XEC.8 |
592 |
9 |
217.052861 |
217.052861 |
-140.105722 |
2.480018e-09 |
|
* |
|
| XEC.30 |
135 |
9 |
216.454556 |
216.454556 |
-138.909111 |
1.361063e-09 |
|
* |
|
| MC.24.1 |
25 |
9 |
215.662274 |
215.662274 |
-137.324548 |
6.146304e-10 |
|
* |
|
| XEC.18 |
165 |
9 |
215.374343 |
215.374343 |
-136.748686 |
4.622108e-10 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 583_C|T, 635_C|T, 670_T|G, 897_C|A, 898_T|C, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 8664_C|T, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17097_T|C,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21764_21769, 21770_G|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27580_27616, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ252580
| Target: 5350 samples | Number of changes: 136 | |
| BC: XEC.4 + XEC.2 | BC BR: 13-14 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-11,16-136 | Gap history (edge excluded): 11-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.72e-35 | Rec. model vs L2: 2.21e-24 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
11 |
19.610508 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
11 |
19.042211 |
12.639075 |
16.721849 |
5.627049e-01 |
* |
* |
|
| XEC.8 |
592 |
11 |
17.718321 |
11.319573 |
19.360853 |
1.503183e-01 |
* |
* |
|
| KP.3.3 |
1715 |
11 |
12.126020 |
1.352704 |
39.294593 |
7.067526e-06 |
|
* |
|
| XEC.18.2 |
10 |
11 |
11.417667 |
5.020611 |
31.958779 |
2.760303e-04 |
* |
* |
|
| XEC.1 |
99 |
11 |
9.617396 |
3.220339 |
35.559322 |
4.562750e-05 |
* |
* |
|
| KP.3.1 |
1957 |
11 |
8.991071 |
-1.791261 |
45.582522 |
3.043766e-07 |
|
* |
|
| PY.4 |
10 |
4 |
8.702742 |
-21.103047 |
84.206093 |
1.244553e-15 |
|
|
|
| KP.2.14.1 |
13 |
4 |
8.545738 |
-20.598457 |
83.196914 |
2.062206e-15 |
|
|
|
| JN.1 |
17255 |
15 |
8.256835 |
4.333642 |
33.332716 |
1.391442e-04 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
200.197467 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
1 |
183.352989 |
172.033415 |
-66.066831 |
3.690828e-10 |
|
|
|
| XEC.19 |
59 |
16 |
183.286016 |
176.841610 |
-75.683220 |
4.507221e-08 |
|
* |
|
| KP.3.3 |
1715 |
16 |
180.051973 |
173.607567 |
-69.215134 |
1.782944e-09 |
|
* |
|
| XEC.30 |
135 |
3 |
177.558874 |
166.187766 |
-54.375532 |
1.068249e-12 |
|
|
|
| XEC.39 |
155 |
3 |
172.777755 |
161.416302 |
-44.832604 |
9.013977e-15 |
|
|
|
| XEC.9 |
305 |
16 |
170.975963 |
164.531558 |
-51.063115 |
2.031158e-13 |
|
* |
|
| XEC.14 |
193 |
4 |
170.973367 |
160.710989 |
-43.421978 |
4.453883e-15 |
|
|
|
| XEC.2.2.1 |
46 |
19 |
167.697041 |
157.615610 |
-37.231220 |
2.016496e-16 |
|
|
|
| XEC.18 |
165 |
1 |
166.650980 |
154.011905 |
-30.023810 |
5.482338e-18 |
|
|
|
|
Target sequence
, 241_C|T, 635_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6183_A|G, 6406_C|T, 7842_A|G, 8293_C|T, 8299_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14790_C|T, 15126_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20404_C|T, 21641_G|T, 21711_C|T, 21738_T|C, 21765_21770, 21812_C|A, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C,
22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C,
22813_G|T, 22879_C|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C,
23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28254, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ253886
| Target: 5350 samples | Number of changes: 148 | |
| BC: XEC.11 + XEC.2 | BC BR: 16-17 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-12,19-148 | Gap history (edge excluded): 12-19 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.55e-06 | |
| Rec. model vs L1: 3.03e-27 | Rec. model vs L2: 8.21e-27 | |
| Flags: Model_1BP_Best | | |
XEC.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.11 |
16 |
12 |
29.383520 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.11.1 |
166 |
12 |
29.170127 |
15.722473 |
6.555054 |
8.108602e-05 |
* |
* |
|
| KP.3.3 |
1715 |
16 |
18.687254 |
18.687254 |
0.625492 |
1.572639e-03 |
* |
|
|
| XEC.11.1.1 |
12 |
12 |
18.317398 |
4.875786 |
28.248427 |
1.581329e-09 |
|
* |
|
| XEC.35.1 |
28 |
12 |
17.918241 |
13.674890 |
10.650221 |
1.049092e-05 |
* |
* |
|
| XEC.14 |
193 |
12 |
16.252217 |
12.008866 |
13.982268 |
1.984785e-06 |
|
* |
|
| XEC.13 |
30 |
17 |
16.162531 |
10.955762 |
16.088475 |
6.910871e-07 |
|
|
|
| XEC.24.1 |
18 |
12 |
15.861852 |
11.561343 |
14.877315 |
1.265555e-06 |
|
* |
|
| XEC.23 |
142 |
12 |
15.686687 |
6.355283 |
25.289433 |
6.946694e-09 |
|
* |
|
| XEC.38 |
34 |
12 |
15.577978 |
11.334627 |
15.330746 |
1.010566e-06 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
19 |
218.384527 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.33 |
169 |
52 |
208.145394 |
188.073475 |
-88.146951 |
4.586401e-07 |
|
|
|
| KP.3.3 |
1715 |
19 |
206.180018 |
181.803758 |
-75.607517 |
8.678519e-10 |
|
* |
|
| XEC.13 |
30 |
7 |
205.105637 |
191.151845 |
-94.303690 |
9.929504e-06 |
|
|
|
| XEK.5 |
28 |
19 |
204.299162 |
179.912351 |
-71.824702 |
1.304541e-10 |
|
* |
|
| XEC.2.2 |
273 |
19 |
200.563447 |
180.563447 |
-73.126894 |
2.511427e-10 |
|
* |
|
| XEC.8 |
592 |
19 |
200.384129 |
185.805217 |
-83.610434 |
4.738311e-08 |
|
* |
|
| XEC.39 |
155 |
19 |
198.117564 |
178.117564 |
-68.235128 |
2.178063e-11 |
|
* |
|
| XEC.9 |
305 |
19 |
197.347986 |
171.265171 |
-54.530342 |
2.296052e-14 |
|
* |
|
| XEC.29 |
135 |
19 |
197.226078 |
168.663000 |
-49.326000 |
1.705360e-15 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 515_520, 670_T|G, 829_C|T, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4181_G|T, 4184_G|A, 4321_C|T, 6183_A|G, 6250_C|T, 6402_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14184_C|T,
14408_C|T, 15714_C|T, 15756_T|A, 16338_C|T, 17410_C|T, 17856_A|G, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19028_A|G, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTNT, 21618_C|T,
21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27579_27581, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29272_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): OZ253899
| Target: 5350 samples | Number of changes: 144 | |
| BC: XEC.6 + XEC.2 | BC BR: 13-14 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-13,17-144 | Gap history (edge excluded): 13-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.80e-33 | Rec. model vs L2: 7.20e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.6 |
45 |
13 |
26.742494 |
NaN |
NaN |
NaN |
* |
* |
* |
| PG.3 |
31 |
13 |
26.401080 |
26.401080 |
-26.802160 |
0.711770 |
* |
* |
|
| XEC.28 |
39 |
13 |
24.665462 |
24.665462 |
-23.330925 |
0.125556 |
* |
* |
|
| XEC.4 |
192 |
15 |
23.051273 |
16.214163 |
-6.428326 |
0.000027 |
* |
|
|
| XEC.5 |
126 |
15 |
22.432474 |
16.154980 |
-6.309960 |
0.000025 |
* |
|
|
| MC.24 |
831 |
15 |
22.393442 |
18.004705 |
-10.009410 |
0.000161 |
* |
|
|
| KP.3.1 |
1957 |
15 |
21.637916 |
18.510306 |
-11.020613 |
0.000267 |
* |
|
|
| XEC.25 |
13 |
15 |
20.947831 |
13.497616 |
-0.995232 |
0.000002 |
|
|
|
| XEC.32 |
42 |
15 |
19.732255 |
13.454761 |
-0.909521 |
0.000002 |
|
|
|
| KP.3.1.1 |
12013 |
15 |
19.340654 |
16.323422 |
-6.646844 |
0.000030 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
266.291455 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
4 |
243.753457 |
226.915786 |
-167.831572 |
1.213825e-15 |
|
|
|
| XEC.9 |
305 |
17 |
234.878537 |
212.405513 |
-138.811025 |
6.060983e-22 |
|
* |
|
| XEC.2.2 |
273 |
24 |
233.676393 |
211.916366 |
-137.832731 |
3.713118e-22 |
|
|
|
| XEC.18 |
165 |
4 |
231.254683 |
209.821902 |
-133.643803 |
4.569744e-23 |
|
|
|
| XEC.39 |
155 |
4 |
229.918031 |
208.500871 |
-131.001741 |
1.220740e-23 |
|
|
|
| XEC.38 |
34 |
4 |
229.839194 |
208.460304 |
-130.920608 |
1.172874e-23 |
|
|
|
| XEC.6 |
45 |
1 |
228.039001 |
201.296507 |
-116.593014 |
9.068415e-27 |
|
|
|
| XEC.4 |
192 |
4 |
227.712175 |
206.301116 |
-126.602231 |
1.352618e-24 |
|
|
|
| XEC.14 |
193 |
6 |
227.533320 |
207.192026 |
-128.384052 |
3.293801e-24 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 222_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6027_C|T, 6183_A|G, 6476_G|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 9679_C|T, 10029_C|T, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16323_C|T, 16362_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28651_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ253914
| Target: 5350 samples | Number of changes: 142 | |
| BC: XEC.6 + XEC.2 | BC BR: 12-13 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-10,16-142 | Gap history (edge excluded): 10-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.13e-33 | Rec. model vs L2: 6.85e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.6 |
45 |
10 |
21.025611 |
NaN |
NaN |
NaN |
* |
* |
* |
| PG.3 |
31 |
10 |
20.727304 |
19.281664 |
-12.563327 |
0.759572 |
* |
* |
|
| XEC.28 |
39 |
10 |
18.857113 |
17.342480 |
-8.684961 |
0.109154 |
* |
* |
|
| XEC.4 |
192 |
14 |
15.813411 |
8.976300 |
8.047400 |
0.000025 |
* |
|
|
| MC.24 |
831 |
14 |
15.151503 |
10.762766 |
4.474469 |
0.000152 |
* |
|
|
| XEC.5 |
126 |
14 |
15.141493 |
8.863999 |
8.272003 |
0.000023 |
* |
|
|
| KP.3.1 |
1957 |
14 |
14.414457 |
11.286848 |
3.426305 |
0.000256 |
* |
|
|
| XEC.25 |
13 |
14 |
13.624849 |
6.174634 |
13.650732 |
0.000002 |
|
|
|
| XFB.3 |
56 |
6 |
13.391693 |
6.606966 |
12.786068 |
0.000002 |
|
|
|
| KP.2.28.1 |
10 |
6 |
13.318834 |
6.459999 |
13.080002 |
0.000002 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
262.717046 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
22 |
233.526708 |
204.605241 |
-121.210482 |
3.244211e-22 |
|
|
|
| XEC.9 |
305 |
22 |
232.585592 |
205.179474 |
-122.358947 |
5.765386e-22 |
|
|
|
| KP.3.3 |
1715 |
4 |
229.224421 |
219.650556 |
-151.301113 |
1.109352e-15 |
|
|
|
| XEC.15 |
127 |
25 |
225.043735 |
188.942343 |
-89.884685 |
5.103710e-29 |
|
|
|
| XEC.18 |
165 |
22 |
224.090972 |
202.773748 |
-117.547495 |
5.204154e-23 |
|
|
|
| XEC.39 |
155 |
22 |
222.729770 |
201.393521 |
-114.787043 |
1.309254e-23 |
|
|
|
| XEC.14 |
193 |
22 |
221.334989 |
200.011685 |
-112.023371 |
3.277373e-24 |
|
|
|
| XEC.38 |
34 |
16 |
221.162256 |
201.169104 |
-114.338208 |
1.045460e-23 |
|
* |
|
| XEC.2.1 |
265 |
25 |
220.942991 |
181.215578 |
-74.431156 |
2.254037e-32 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 222_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6027_C|T, 6183_A|G, 6476_G|T, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 9679_C|T, 10029_C|T, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16323_C|T, 16362_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28651_C|T, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ253899
| Target: 5350 samples | Number of changes: 144 | |
| BC: XEC.6 + XEC.2 | BC BR: 13-14 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-13,17-144 | Gap history (edge excluded): 13-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.80e-33 | Rec. model vs L2: 7.20e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.6 |
45 |
13 |
26.742494 |
NaN |
NaN |
NaN |
* |
* |
* |
| PG.3 |
31 |
13 |
26.401080 |
26.401080 |
-26.802160 |
0.711770 |
* |
* |
|
| XEC.28 |
39 |
13 |
24.665462 |
24.665462 |
-23.330925 |
0.125556 |
* |
* |
|
| XEC.4 |
192 |
15 |
23.051273 |
16.214163 |
-6.428326 |
0.000027 |
* |
|
|
| XEC.5 |
126 |
15 |
22.432474 |
16.154980 |
-6.309960 |
0.000025 |
* |
|
|
| MC.24 |
831 |
15 |
22.393442 |
18.004705 |
-10.009410 |
0.000161 |
* |
|
|
| KP.3.1 |
1957 |
15 |
21.637916 |
18.510306 |
-11.020613 |
0.000267 |
* |
|
|
| XEC.25 |
13 |
15 |
20.947831 |
13.497616 |
-0.995232 |
0.000002 |
|
|
|
| XEC.32 |
42 |
15 |
19.732255 |
13.454761 |
-0.909521 |
0.000002 |
|
|
|
| KP.3.1.1 |
12013 |
15 |
19.340654 |
16.323422 |
-6.646844 |
0.000030 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
266.291455 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
4 |
243.753457 |
226.915786 |
-167.831572 |
1.213825e-15 |
|
|
|
| XEC.9 |
305 |
17 |
234.878537 |
212.405513 |
-138.811025 |
6.060983e-22 |
|
* |
|
| XEC.2.2 |
273 |
24 |
233.676393 |
211.916366 |
-137.832731 |
3.713118e-22 |
|
|
|
| XEC.18 |
165 |
4 |
231.254683 |
209.821902 |
-133.643803 |
4.569744e-23 |
|
|
|
| XEC.39 |
155 |
4 |
229.918031 |
208.500871 |
-131.001741 |
1.220740e-23 |
|
|
|
| XEC.38 |
34 |
4 |
229.839194 |
208.460304 |
-130.920608 |
1.172874e-23 |
|
|
|
| XEC.6 |
45 |
1 |
228.039001 |
201.296507 |
-116.593014 |
9.068415e-27 |
|
|
|
| XEC.4 |
192 |
4 |
227.712175 |
206.301116 |
-126.602231 |
1.352618e-24 |
|
|
|
| XEC.14 |
193 |
6 |
227.533320 |
207.192026 |
-128.384052 |
3.293801e-24 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 222_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6027_C|T, 6183_A|G, 6476_G|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 9679_C|T, 10029_C|T, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16323_C|T, 16362_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28651_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ253930
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.6 + XEC.2 | BC BR: 12-13 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-10,16-143 | Gap history (edge excluded): 10-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.29e-33 | Rec. model vs L2: 6.85e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.6 |
45 |
10 |
21.025611 |
NaN |
NaN |
NaN |
* |
* |
* |
| PG.3 |
31 |
10 |
20.727304 |
19.281664 |
-12.563327 |
0.759572 |
* |
* |
|
| XEC.28 |
39 |
10 |
18.857113 |
17.342480 |
-8.684961 |
0.109154 |
* |
* |
|
| XEC.4 |
192 |
14 |
15.813411 |
8.976300 |
8.047400 |
0.000025 |
* |
|
|
| MC.24 |
831 |
14 |
15.151503 |
10.762766 |
4.474469 |
0.000152 |
* |
|
|
| XEC.5 |
126 |
14 |
15.141493 |
8.863999 |
8.272003 |
0.000023 |
* |
|
|
| KP.3.1 |
1957 |
14 |
14.414457 |
11.286848 |
3.426305 |
0.000256 |
* |
|
|
| XEC.25 |
13 |
14 |
13.624849 |
6.174634 |
13.650732 |
0.000002 |
|
|
|
| XFB.3 |
56 |
6 |
13.391693 |
6.606966 |
12.786068 |
0.000002 |
|
|
|
| KP.2.28.1 |
10 |
6 |
13.318834 |
6.459999 |
13.080002 |
0.000002 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
269.894683 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
22 |
240.701886 |
211.780418 |
-135.560837 |
3.244211e-22 |
|
|
|
| XEC.9 |
305 |
22 |
239.769711 |
212.363593 |
-136.727186 |
5.823329e-22 |
|
|
|
| KP.3.3 |
1715 |
4 |
236.412347 |
226.838482 |
-165.676965 |
1.126118e-15 |
|
|
|
| XEC.15 |
127 |
25 |
232.241012 |
196.139620 |
-104.279240 |
5.232911e-29 |
|
|
|
| XEC.18 |
165 |
22 |
231.276091 |
209.958867 |
-131.917733 |
5.256457e-23 |
|
|
|
| XEC.39 |
155 |
22 |
229.914102 |
208.577853 |
-129.155707 |
1.322412e-23 |
|
|
|
| XEC.14 |
193 |
22 |
228.532266 |
207.208963 |
-126.417925 |
3.360340e-24 |
|
|
|
| XEC.38 |
34 |
16 |
228.359533 |
208.366381 |
-128.732762 |
1.066580e-23 |
|
* |
|
| XEC.2.1 |
265 |
25 |
228.117497 |
188.390085 |
-88.780169 |
2.254037e-32 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 222_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6027_C|T, 6183_A|G, 6476_G|T, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 9679_C|T, 10029_C|T, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16323_C|T, 16362_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28651_C|T,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ255358
| Target: 5350 samples | Number of changes: 135 | |
| BC: XEC.29 + KP.3.1.1 | BC BR: 46-47 | BC BR coord: 20059 - 20060 |
| Direction L1: << | Initial region span: 1-10,50-135 | Gap history (edge excluded): 10-50 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.36e-06 | |
| Rec. model vs L1: 5.27e-03 | Rec. model vs L2: 1.14e-53 | |
| Flags: Model_1BP_Best | | |
XEC.29 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.29 |
135 |
10 |
25.810025 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
36 |
25.121783 |
14.172950 |
79.654101 |
4.242574e-02 |
* |
|
|
| LB.1.3 |
778 |
36 |
21.308170 |
-13.504411 |
135.008821 |
4.039784e-14 |
|
|
|
| JN.1.13.1 |
751 |
36 |
19.360688 |
-9.658035 |
127.316070 |
1.888950e-12 |
|
|
|
| LB.1 |
1128 |
36 |
18.607672 |
-1.801574 |
111.603149 |
4.895252e-09 |
|
|
|
| XEC.17 |
13 |
46 |
16.950408 |
16.950408 |
74.099183 |
6.804506e-01 |
* |
|
|
| KP.3.3 |
1715 |
36 |
16.606773 |
7.137632 |
93.724735 |
3.735664e-05 |
* |
|
|
| XEC.38 |
34 |
46 |
16.591667 |
16.591667 |
74.816666 |
4.747343e-01 |
* |
|
|
| KP.3.1 |
1957 |
34 |
16.565975 |
-6.886910 |
121.773821 |
3.029616e-11 |
|
|
|
| XEC.5 |
126 |
46 |
16.560985 |
16.560985 |
74.878031 |
4.607038e-01 |
* |
|
|
| |||||
KP.3.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
50 |
143.178104 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.17 |
13 |
50 |
134.965102 |
95.979602 |
18.040797 |
1.609109e-08 |
|
* |
|
| MR.2 |
14 |
50 |
134.332198 |
96.615330 |
16.769339 |
3.036425e-08 |
|
* |
|
| XEC.15 |
127 |
50 |
131.381088 |
89.512564 |
30.974873 |
2.505369e-11 |
|
* |
|
| XEC.2 |
921 |
40 |
131.309845 |
110.462585 |
-10.925169 |
3.142976e-02 |
* |
|
|
| XEK.1.2 |
33 |
50 |
131.302972 |
94.874388 |
20.251223 |
5.329545e-09 |
|
* |
|
| XEC.2.2 |
273 |
50 |
131.181543 |
97.722242 |
14.555517 |
9.167648e-08 |
|
* |
|
| XEC.9 |
305 |
50 |
131.139648 |
97.469838 |
15.060324 |
7.139771e-08 |
|
* |
|
| XEK.5 |
28 |
50 |
131.079532 |
97.365644 |
15.268712 |
6.428111e-08 |
|
* |
|
| XEC.25 |
13 |
50 |
131.070597 |
93.759877 |
22.480245 |
1.747639e-09 |
|
* |
|
|
Target sequence
, 37_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3682_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7360_G|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10396_G|T, 10447_G|A, 10449_C|A, 11042_G|T, 11727_G|A, 12667_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16257_T|C, 17410_C|T, 18116_A|G, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20400_A|G, 21738_T|C, 21752_T|A, 21941_G|T, 21987_G|A, 22032_T|C, 22033_C|A,
22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T,
22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24460_T|C, 24469_T|A, 24872_G|T,
24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 26966_T|C, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28913_G|A, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ256652
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.6 + XEC.2 | BC BR: 13-14 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-13,17-145 | Gap history (edge excluded): 13-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.44e-33 | Rec. model vs L2: 7.20e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.6 |
45 |
13 |
26.742494 |
NaN |
NaN |
NaN |
* |
* |
* |
| PG.3 |
31 |
13 |
26.401080 |
26.401080 |
-26.802160 |
0.711770 |
* |
* |
|
| XEC.28 |
39 |
13 |
24.665462 |
24.665462 |
-23.330925 |
0.125556 |
* |
* |
|
| XEC.4 |
192 |
15 |
23.051273 |
16.214163 |
-6.428326 |
0.000027 |
* |
|
|
| XEC.5 |
126 |
15 |
22.432474 |
16.154980 |
-6.309960 |
0.000025 |
* |
|
|
| MC.24 |
831 |
15 |
22.393442 |
18.004705 |
-10.009410 |
0.000161 |
* |
|
|
| KP.3.1 |
1957 |
15 |
21.637916 |
18.510306 |
-11.020613 |
0.000267 |
* |
|
|
| XEC.25 |
13 |
15 |
20.947831 |
13.497616 |
-0.995232 |
0.000002 |
|
|
|
| XEC.32 |
42 |
15 |
19.732255 |
13.454761 |
-0.909521 |
0.000002 |
|
|
|
| KP.3.1.1 |
12013 |
15 |
19.340654 |
16.323422 |
-6.646844 |
0.000030 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
273.484845 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
4 |
251.001493 |
234.163823 |
-182.327646 |
1.282455e-15 |
|
|
|
| XEC.9 |
305 |
17 |
242.162397 |
219.689373 |
-153.378745 |
6.631772e-22 |
|
* |
|
| XEC.2.2 |
273 |
24 |
240.646500 |
218.886472 |
-151.772944 |
2.964985e-22 |
|
|
|
| XEC.18 |
165 |
4 |
238.577416 |
217.144635 |
-148.289270 |
5.204154e-23 |
|
|
|
| XEC.39 |
155 |
4 |
237.246168 |
215.829008 |
-145.658015 |
1.397182e-23 |
|
|
|
| XEC.38 |
34 |
4 |
237.102221 |
215.723331 |
-145.446663 |
1.257917e-23 |
|
|
|
| XEC.6 |
45 |
1 |
235.300594 |
208.558100 |
-131.116200 |
9.725949e-27 |
|
|
|
| XEC.4 |
192 |
4 |
234.974530 |
213.563471 |
-141.126942 |
1.450694e-24 |
|
|
|
| XEC.14 |
193 |
6 |
234.785285 |
214.443992 |
-142.887983 |
3.497478e-24 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 222_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6027_C|T, 6183_A|G, 6476_G|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 9679_C|T, 10029_C|T, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16323_C|T, 16362_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28651_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ259254
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.6 + XEC.2 | BC BR: 12-13 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-10,16-145 | Gap history (edge excluded): 10-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.85e-33 | Rec. model vs L2: 6.85e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.6 |
45 |
10 |
21.025611 |
NaN |
NaN |
NaN |
* |
* |
* |
| PG.3 |
31 |
10 |
20.727304 |
19.281664 |
-12.563327 |
0.759572 |
* |
* |
|
| XEC.28 |
39 |
10 |
18.857113 |
17.342480 |
-8.684961 |
0.109154 |
* |
* |
|
| XEC.4 |
192 |
14 |
15.813411 |
8.976300 |
8.047400 |
0.000025 |
* |
|
|
| MC.24 |
831 |
14 |
15.151503 |
10.762766 |
4.474469 |
0.000152 |
* |
|
|
| XEC.5 |
126 |
14 |
15.141493 |
8.863999 |
8.272003 |
0.000023 |
* |
|
|
| KP.3.1 |
1957 |
14 |
14.414457 |
11.286848 |
3.426305 |
0.000256 |
* |
|
|
| XEC.25 |
13 |
14 |
13.624849 |
6.174634 |
13.650732 |
0.000002 |
|
|
|
| XFB.3 |
56 |
6 |
13.391693 |
6.606966 |
12.786068 |
0.000002 |
|
|
|
| KP.2.28.1 |
10 |
6 |
13.318834 |
6.459999 |
13.080002 |
0.000002 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
280.689930 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
4 |
250.866270 |
241.292405 |
-192.584810 |
1.183855e-15 |
|
|
|
| XEC.9 |
305 |
16 |
249.326363 |
226.853339 |
-163.706678 |
6.371737e-22 |
|
* |
|
| XEC.2.2 |
273 |
23 |
247.671992 |
225.911965 |
-161.823929 |
2.476564e-22 |
|
|
|
| XEC.18 |
165 |
16 |
240.865537 |
224.475328 |
-158.950656 |
5.897079e-23 |
|
* |
|
| XEC.39 |
155 |
16 |
239.508558 |
223.111877 |
-156.223753 |
1.506000e-23 |
|
* |
|
| XEC.38 |
34 |
16 |
239.225503 |
222.835294 |
-155.670589 |
1.143916e-23 |
|
* |
|
| XEC.15 |
127 |
26 |
239.170347 |
210.259030 |
-130.518061 |
3.954949e-29 |
|
|
|
| XEC.14 |
193 |
16 |
238.057023 |
221.666814 |
-153.333628 |
3.550336e-24 |
|
* |
|
| XEC.29 |
135 |
26 |
235.472903 |
198.653095 |
-107.306190 |
3.607060e-34 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 222_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6027_C|T, 6183_A|G, 6476_G|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 9679_C|T, 10029_C|T, 10198_C|T, 10369_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16323_C|T, 16362_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28651_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): OZ260197
| Target: 5350 samples | Number of changes: 140 | |
| BC: XEC.39 + XEK.5 | BC BR: 48-49 | BC BR coord: 21642 - 21643 |
| Direction L1: << | Initial region span: 1-45,49-140 | Gap history (edge excluded): 45-49 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.39e-16 | Rec. model vs L2: 5.16e-60 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.39 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.39 |
155 |
45 |
38.388351 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
35 |
35.082955 |
8.702492 |
96.595016 |
2.368471e+03 |
* |
|
|
| LB.1.3 |
778 |
35 |
30.639802 |
-46.981661 |
207.963323 |
1.559378e-21 |
|
|
|
| JN.1.13.1 |
751 |
35 |
30.478946 |
-27.966205 |
169.932410 |
2.825276e-13 |
|
|
|
| LB.1 |
1128 |
35 |
27.504427 |
-24.832603 |
163.665205 |
6.462532e-12 |
|
|
|
| KP.3.3 |
1715 |
35 |
26.542676 |
-9.338321 |
132.676642 |
3.465738e-05 |
* |
|
|
| XEC.16 |
23 |
45 |
26.473286 |
-22.433528 |
158.867056 |
7.123762e-11 |
|
* |
|
| XEC.17 |
13 |
45 |
26.473286 |
-22.573290 |
159.146580 |
6.193102e-11 |
|
* |
|
| XEC.24 |
11 |
45 |
26.473286 |
-22.573290 |
159.146580 |
6.193102e-11 |
|
* |
|
| XEC.32 |
42 |
45 |
26.449188 |
-9.721779 |
133.443557 |
2.370084e-05 |
* |
* |
|
| |||||
XEK.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.5 |
28 |
49 |
167.609174 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
15 |
165.473003 |
153.682053 |
-113.364106 |
8.918214e-07 |
|
|
|
| KP.3.3 |
1715 |
48 |
162.348195 |
159.657421 |
-125.314843 |
3.509033e-04 |
* |
* |
|
| XEC.36 |
30 |
49 |
159.756236 |
159.756236 |
-125.512473 |
3.878081e-04 |
* |
* |
|
| XEK.2 |
67 |
49 |
159.320949 |
159.320949 |
-124.641899 |
2.510145e-04 |
* |
* |
|
| KP.3.1.1 |
12013 |
49 |
158.943749 |
154.275478 |
-114.550956 |
1.616900e-06 |
|
* |
|
| XEC.19 |
59 |
48 |
157.436406 |
153.609593 |
-113.219187 |
8.315287e-07 |
|
* |
|
| XEC.15 |
127 |
48 |
157.035680 |
153.975517 |
-113.951035 |
1.197829e-06 |
|
* |
|
| XEC.2.2 |
273 |
48 |
156.139292 |
153.844414 |
-113.688828 |
1.051808e-06 |
|
* |
|
| XEC.31 |
66 |
48 |
155.698571 |
153.775635 |
-113.551270 |
9.806992e-07 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1929_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3682_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7360_G|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10396_G|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16257_T|C,
17410_C|T, 18116_A|G, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20151_T|C, 20400_A|G, 21641_G|T, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22264_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
26966_T|C, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28913_G|A, 28958_C|A,
29510_A|C, 29734_29759
Case 72 (XEC): USA/2607442/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: BA.5.11 + XEC.18 | BC BR: 5-6 | BC BR coord: 686 - 687 |
| Direction L1: << | Initial region span: 1-4,9-143 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 5.03e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BA.5.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BA.5.11 |
989 |
4 |
8.106025 |
NaN |
NaN |
NaN |
* |
* |
* |
| HN.8 |
13 |
4 |
6.801549 |
-3.198451 |
18.396902 |
0.000013 |
* |
* |
|
| DE.1 |
90 |
5 |
6.620049 |
6.620049 |
-1.240099 |
0.247833 |
* |
* |
|
| BG.5 |
669 |
4 |
6.256906 |
5.277064 |
1.445873 |
0.064570 |
* |
* |
|
| BA.4.6 |
19369 |
5 |
5.986448 |
5.986448 |
0.027103 |
0.131336 |
* |
* |
|
| CM.2 |
356 |
4 |
5.668259 |
5.655743 |
0.688515 |
0.094420 |
* |
* |
|
| BQ.1.12 |
2465 |
4 |
5.363047 |
4.647657 |
2.704685 |
0.034562 |
* |
* |
|
| BA.5 |
6418 |
5 |
4.399094 |
4.399094 |
3.201813 |
0.026917 |
* |
* |
|
| BA.5.2.2 |
625 |
4 |
4.194037 |
3.464549 |
5.070903 |
0.010567 |
* |
* |
|
| BA.2.72 |
344 |
4 |
4.129940 |
2.205802 |
7.588396 |
0.002997 |
* |
* |
|
| |||||
XEC.18 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
9 |
262.874907 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
13 |
260.502314 |
241.476221 |
-168.952441 |
6.604527e-03 |
* |
|
|
| XEC.19 |
59 |
19 |
260.246855 |
237.394599 |
-160.789198 |
1.116658e-04 |
* |
|
|
| KP.3.3 |
1715 |
13 |
259.567101 |
246.364005 |
-178.728010 |
8.780954e-01 |
* |
|
|
| XEC.2 |
921 |
19 |
258.077153 |
227.506625 |
-141.013250 |
5.659105e-09 |
|
|
|
| XEC.33 |
169 |
13 |
250.232992 |
231.197954 |
-148.395908 |
2.277539e-07 |
|
|
|
| XEC.2.2.1 |
46 |
19 |
249.832308 |
201.401210 |
-88.802420 |
2.603097e-20 |
|
|
|
| XEK.1.2 |
33 |
19 |
249.196523 |
179.530173 |
-45.060346 |
8.269324e-30 |
|
|
|
| XEC.2.1 |
265 |
19 |
248.840825 |
208.650527 |
-103.301054 |
3.665433e-17 |
|
|
|
| XEC.29 |
135 |
19 |
247.254376 |
217.222809 |
-120.445619 |
1.941782e-13 |
|
|
|
|
Target sequence
, 241_C|T, 388_G|A, 509_523, 670_T|G, 686_694, 884_C|T, 897_C|A, 1780_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3213_A|G, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6198_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23285_G|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27476_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/AL-CDC-LC1136375/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: ML.2 + XEC.8 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,17-147 | Gap history (edge excluded): 4-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.94e-89 | Rec. model vs L2: 1.36e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
ML.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| ML.2 |
67 |
4 |
10.429993 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.5 |
126 |
7 |
7.088026 |
-5.313181 |
18.626363 |
1.452223e-07 |
|
|
|
| KP.1.1.3 |
979 |
4 |
6.752912 |
6.752912 |
-5.505824 |
2.534941e-02 |
* |
* |
|
| LB.1 |
1128 |
4 |
6.623602 |
6.623602 |
-5.247205 |
2.225920e-02 |
* |
* |
|
| KP.2.3 |
4440 |
4 |
5.262138 |
5.262138 |
-2.524276 |
5.684569e-03 |
* |
* |
|
| BQ.1.1.13 |
384 |
3 |
5.209197 |
-4.790803 |
17.581606 |
2.454924e-07 |
|
* |
|
| BN.1 |
1200 |
3 |
4.758002 |
-5.241998 |
18.483997 |
1.565328e-07 |
|
* |
|
| BA.5.2.25 |
225 |
3 |
4.643280 |
-5.356720 |
18.713440 |
1.395281e-07 |
|
* |
|
| BA.2.6 |
424 |
3 |
4.011740 |
-5.988260 |
19.976520 |
7.394088e-08 |
|
* |
|
| JN.1 |
17255 |
4 |
3.898572 |
3.898572 |
0.202856 |
1.459006e-03 |
* |
* |
|
| |||||
XEC.8 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
17 |
239.838590 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
17 |
235.955115 |
192.152673 |
-72.305346 |
6.983891e-13 |
|
* |
|
| XEC.31 |
66 |
17 |
233.874147 |
206.296200 |
-100.592401 |
9.660985e-07 |
|
* |
|
| XEC.13 |
30 |
9 |
230.779072 |
218.142681 |
-124.285362 |
1.353353e-01 |
* |
|
|
| XEC.4 |
192 |
17 |
226.152775 |
206.470555 |
-100.941109 |
1.150861e-06 |
|
* |
|
| XEC.9 |
305 |
17 |
225.877310 |
200.107992 |
-88.215984 |
1.990261e-09 |
|
* |
|
| XEC.5 |
126 |
3 |
225.426010 |
220.743758 |
-129.487515 |
1.822119e+00 |
* |
|
|
| KP.3.3 |
1715 |
17 |
224.619573 |
196.008512 |
-80.017024 |
3.298395e-11 |
|
* |
|
| XEC.16 |
23 |
17 |
222.913957 |
203.274296 |
-94.548592 |
4.714679e-08 |
|
* |
|
| XEC.15 |
127 |
32 |
218.705506 |
196.333501 |
-80.667001 |
4.565080e-11 |
|
|
|
|
Target sequence
, 241_C|T, 548_A|G, 670_T|G, 897_C|A, 1221_C|T, 2060_G|A, 2790_C|T, 2883_G|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5184_C|A, 6183_A|G, 6504_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11647_T|C, 11727_G|A, 12119_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18490_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21595_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21759_A|G, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25584_C|T, 25947_G|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/AZ-CDC-LC1136724/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.2.1 + JN.1.4 + XEC.2.1 | BC BR: 10-11, 29-30 | BC BR coord: 4330 - 4331, 11726 - 11727 |
| Direction L1: << | Initial region span: 1-10,14-29,30-146 | Gap history (edge excluded): 10-30 -> 10-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.79e-01 | |
| Rec. model vs L1: 1.51e-27 | Rec. model vs L2: 1.02e-67 | |
| Flags: Model_2BP_Best | | |
XEC.2.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2.1 |
265 |
10 |
5.110242 |
None |
None |
None |
* |
* |
* |
| |||||
JN.1.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.4 |
8971 |
14 |
21.326646 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
16 |
18.403504 |
0.446263 |
45.107473 |
1.122064e-02 |
* |
|
|
| JN.1 |
17255 |
16 |
17.393277 |
12.515814 |
20.968372 |
1.958629e+03 |
* |
|
|
| NL.19 |
18 |
16 |
13.363880 |
-9.423386 |
64.846772 |
5.801379e-07 |
|
|
|
| JN.1.59 |
77 |
16 |
11.203885 |
-11.583381 |
69.166762 |
6.690447e-08 |
|
|
|
| JN.1.16.1 |
466 |
16 |
10.959804 |
-11.833912 |
69.667823 |
5.210526e-08 |
|
|
|
| NW.1 |
111 |
16 |
10.806076 |
-14.194619 |
74.389238 |
4.919790e-09 |
|
|
|
| MC.42 |
84 |
16 |
10.676479 |
-16.497598 |
78.995197 |
4.907923e-10 |
|
|
|
| BA.5.2.58 |
299 |
28 |
8.808574 |
-81.665569 |
209.331138 |
2.455262e-38 |
|
|
|
| MC.19 |
221 |
16 |
8.767825 |
-18.406252 |
82.812504 |
7.304101e-11 |
|
|
|
| |||||
XEC.2.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2.1 |
265 |
30 |
239.456143 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.21 |
38 |
30 |
234.529655 |
255.972354 |
-251.944707 |
8.976945e+04 |
* |
* |
|
| XEC.29 |
135 |
30 |
228.715062 |
250.162069 |
-240.324138 |
2.690777e+02 |
* |
* |
|
| XEC.13 |
30 |
30 |
225.221545 |
246.657011 |
-233.314021 |
8.084915e+00 |
* |
* |
|
| XEC.39 |
155 |
1 |
220.009808 |
233.192331 |
-206.384661 |
1.147890e-05 |
* |
|
|
| XEC.31 |
66 |
30 |
218.854723 |
240.278288 |
-220.556576 |
1.377362e-02 |
* |
* |
|
| XEK.1 |
88 |
30 |
218.726667 |
223.898205 |
-187.796410 |
1.059997e-09 |
|
* |
|
| XEC.25 |
13 |
30 |
218.450885 |
239.920252 |
-219.840505 |
9.609530e-03 |
* |
* |
|
| XEK.5 |
28 |
30 |
218.334071 |
223.442929 |
-186.885858 |
6.725128e-10 |
|
* |
|
| XEC.33 |
169 |
30 |
218.310880 |
239.708276 |
-219.416552 |
7.789333e-03 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5833_C|T, 6183_A|G, 7216_T|C, 7842_A|G, 8248_T|A, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10738_T|C, 11042_G|T, 11083_G|T, 11288_11296, 11479_C|T, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18123_T|C, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26497_T|G, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28697_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-CDC-2-8448546/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: KP.3.3 + MC.33.1 + KP.3.3 | BC BR: 5-6, 9-10 | BC BR coord: 2792 - 2793, 3566 - 3567 |
| Direction L1: << | Initial region span: 1-5,6-9,13-144 | Gap history (edge excluded): 5-13 -> 9-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.31e-01 | |
| Rec. model vs L1: 2.31e-07 | Rec. model vs L2: 1.23e-156 | |
| Flags: Model_2BP_Best | | |
KP.3.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
5 |
7.484405 |
None |
None |
None |
* |
* |
* |
| |||||
MC.33.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.33.1 |
85 |
9 |
12.609551 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3.4 |
70 |
9 |
12.110560 |
12.110560 |
-16.221119 |
6.065307e-01 |
* |
* |
|
| KP.1.1 |
593 |
10 |
11.022576 |
9.944861 |
-11.889723 |
6.959935e-02 |
* |
* |
|
| XFG.3 |
480 |
9 |
10.103287 |
10.103287 |
-12.206575 |
8.167560e-02 |
* |
* |
|
| KP.3.1 |
1957 |
9 |
9.826179 |
9.826179 |
-11.652359 |
6.172909e-02 |
* |
* |
|
| JN.1.4 |
8971 |
9 |
7.237165 |
7.237165 |
-6.474330 |
4.630919e-03 |
* |
* |
|
| B.1.177.19 |
495 |
7 |
6.529220 |
-13.470780 |
34.941560 |
4.716284e-12 |
|
|
|
| BF.14 |
1581 |
7 |
5.445294 |
-14.554706 |
37.109413 |
1.593641e-12 |
|
|
|
| BA.2.9.7 |
243 |
7 |
4.728411 |
-15.271589 |
38.543179 |
7.795964e-13 |
|
|
|
| BA.2.10.1 |
1369 |
7 |
4.540081 |
-15.459919 |
38.919837 |
6.446944e-13 |
|
|
|
| |||||
KP.3.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
13 |
252.932900 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
17 |
247.716863 |
211.551605 |
-119.103211 |
1.145706e-12 |
|
|
|
| XEC.9 |
305 |
17 |
246.285430 |
218.002066 |
-132.004131 |
7.248909e-10 |
|
|
|
| XEC.39 |
155 |
17 |
240.996777 |
218.809964 |
-133.619929 |
1.629488e-09 |
|
|
|
| XEC.33 |
169 |
17 |
240.624092 |
229.368474 |
-154.736948 |
6.283489e-05 |
* |
|
|
| XEC.2 |
921 |
15 |
239.898054 |
210.334928 |
-116.669856 |
3.399425e-13 |
|
|
|
| XEC.31 |
66 |
17 |
236.188008 |
206.073532 |
-108.147065 |
4.800770e-15 |
|
|
|
| XEC.28 |
39 |
17 |
235.722025 |
218.895366 |
-133.790733 |
1.774051e-09 |
|
|
|
| XEC.19 |
59 |
17 |
235.468024 |
206.467151 |
-108.934303 |
7.090646e-15 |
|
|
|
| XEC.14 |
193 |
17 |
235.329662 |
213.142601 |
-122.285203 |
5.646417e-12 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3013_G|A, 3037_C|T, 3431_G|T, 3565_T|C, 3737_C|T, 3809_C|A, 4084_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 6659_A|G, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14655_T|C, 15156_T|C,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22343_G|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23929_C|T, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): USA/CA-CDPH-500146638/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.38 + XEC.2 | BC BR: 11-12 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-8,12-143 | Gap history (edge excluded): 8-12 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.81e-28 | Rec. model vs L2: 4.46e-19 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.38 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.38 |
34 |
8 |
13.172332 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
8 |
12.757409 |
4.904267 |
14.191466 |
0.660340 |
* |
* |
|
| XEC.5 |
126 |
8 |
11.936888 |
4.067746 |
15.864509 |
0.286505 |
* |
* |
|
| XEC.15 |
127 |
8 |
11.878843 |
4.025701 |
15.948597 |
0.273898 |
* |
* |
|
| XEC.9 |
305 |
8 |
11.022016 |
3.165590 |
17.668819 |
0.115903 |
* |
* |
|
| KP.3.3 |
1715 |
8 |
5.863847 |
-1.991046 |
27.982092 |
0.000669 |
* |
* |
|
| XEC.4.6 |
10 |
8 |
5.589794 |
-2.263348 |
28.526696 |
0.000508 |
* |
* |
|
| KP.3.1.1 |
12013 |
11 |
4.534174 |
4.534174 |
14.931653 |
0.456120 |
* |
|
|
| MC.24 |
831 |
8 |
3.990510 |
-3.865041 |
31.730083 |
0.000103 |
* |
* |
|
| KP.3.1 |
1957 |
8 |
3.885854 |
-3.970870 |
31.941740 |
0.000092 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
12 |
238.277608 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
14 |
235.176910 |
222.703885 |
-155.407771 |
1.721327e-07 |
|
|
|
| XEC.30 |
135 |
4 |
231.287337 |
224.635859 |
-159.271719 |
1.185910e-06 |
|
|
|
| XEC.14 |
193 |
13 |
230.573028 |
220.573028 |
-151.146056 |
2.045579e-08 |
|
* |
|
| XEC.29 |
135 |
14 |
229.463795 |
209.076686 |
-128.153373 |
2.072190e-13 |
|
|
|
| XEC.18 |
165 |
13 |
223.116326 |
213.116326 |
-136.232651 |
1.177550e-11 |
|
* |
|
| XEK.2 |
67 |
14 |
220.045290 |
200.719999 |
-111.439997 |
4.874154e-17 |
|
|
|
| XEC.31 |
66 |
13 |
219.797799 |
209.797799 |
-129.595599 |
4.278516e-13 |
|
* |
|
| XEC.28 |
39 |
13 |
219.331816 |
202.357276 |
-114.714552 |
2.500177e-16 |
|
* |
|
| XEC.19 |
59 |
13 |
219.077815 |
202.290051 |
-114.580102 |
2.342834e-16 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 1191_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4321_C|T, 4890_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
9693_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18012_T|A,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24208_C|A, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25429_G|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28297_T|C, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29530_C|T
Case 72 (XEC): USA/CA-CDPH-500146752/2025
| Target: 5350 samples | Number of changes: 139 | |
| BC: XEC.14 + GW.5.2 + XEC.14 | BC BR: 5-6, 8-9 | BC BR coord: 2792 - 2793, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-5,7-8,9-139 | Gap history (edge excluded): 5-9 -> 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.97e-04 | |
| Rec. model vs L1: 7.27e-09 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEC.14 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
5 |
4.213472 |
None |
None |
None |
* |
* |
* |
| |||||
GW.5.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| GW.5.2 |
13 |
7 |
8.004421 |
NaN |
NaN |
NaN |
* |
* |
* |
| NL.2 |
237 |
7 |
6.876263 |
-3.123737 |
12.247475 |
0.323033 |
* |
* |
|
| NL.19 |
18 |
7 |
6.069561 |
-3.930439 |
13.860878 |
0.144424 |
* |
* |
|
| BF.7.4.2 |
154 |
7 |
5.714739 |
-4.285261 |
14.570521 |
0.101266 |
* |
* |
|
| JN.1.1.2 |
17 |
7 |
5.433572 |
-4.566428 |
15.132856 |
0.076536 |
* |
* |
|
| B.1.293 |
36 |
7 |
5.376414 |
-4.623586 |
15.247173 |
0.072078 |
* |
* |
|
| JN.1.7.3 |
19 |
7 |
5.322346 |
-4.677654 |
15.355307 |
0.068221 |
* |
* |
|
| BN.1.2.6 |
25 |
7 |
5.047910 |
-4.952090 |
15.904181 |
0.052079 |
* |
* |
|
| B.1.439 |
85 |
7 |
4.922746 |
-5.077254 |
16.154507 |
0.045959 |
* |
* |
|
| HZ.3 |
65 |
7 |
4.785545 |
-5.214455 |
16.428909 |
0.039955 |
* |
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
9 |
268.306840 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.17 |
13 |
9 |
267.094491 |
279.176919 |
-266.353838 |
776.657923 |
* |
* |
|
| MC.24.1 |
25 |
9 |
264.690577 |
276.078257 |
-260.156514 |
35.163197 |
* |
* |
|
| XEC.32 |
42 |
9 |
263.851395 |
275.933823 |
-259.867646 |
30.416949 |
* |
* |
|
| XEC.4 |
192 |
9 |
263.429305 |
275.495985 |
-258.991969 |
19.589623 |
* |
* |
|
| XEC.13 |
30 |
9 |
263.168841 |
275.251269 |
-258.502539 |
15.332887 |
* |
* |
|
| XEC.38 |
34 |
9 |
263.150639 |
275.203214 |
-258.406429 |
14.658201 |
* |
* |
|
| XEC.18 |
165 |
9 |
262.930734 |
274.994925 |
-257.989849 |
11.881707 |
* |
* |
|
| XEC.24 |
11 |
9 |
262.864692 |
274.947120 |
-257.894240 |
11.302229 |
* |
* |
|
| XEC.40 |
52 |
9 |
262.844209 |
274.887801 |
-257.775602 |
10.697392 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 2950_T|C, 3037_C|T, 3157_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12937_A|G, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G,
18483_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29510_A|C
Case 72 (XEC): USA/CA-CDPH-500146814/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.8 + ML.1 | BC BR: 138-139 | BC BR coord: 28361 - 28362 |
| Direction L1: >> | Initial region span: 1-138,140-146 | Gap history (edge excluded): 138-140 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.03e-08 | Rec. model vs L2: 8.68e-105 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
138 |
238.071288 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
138 |
229.630397 |
229.630397 |
-159.260795 |
2.160502e-04 |
* |
* |
|
| XEC.2 |
921 |
138 |
207.791442 |
207.791442 |
-115.582884 |
7.072339e-14 |
|
* |
|
| XEC.39 |
155 |
138 |
207.345136 |
207.345136 |
-114.690272 |
4.532127e-14 |
|
* |
|
| KP.3.3 |
1715 |
146 |
206.689729 |
192.967116 |
-85.934231 |
2.577196e-20 |
|
|
|
| XEC.40 |
52 |
138 |
202.553265 |
202.553265 |
-105.106530 |
3.767311e-16 |
|
* |
|
| MC.24.1 |
25 |
138 |
198.183060 |
198.183060 |
-96.366120 |
4.766116e-18 |
|
* |
|
| XEC.5 |
126 |
138 |
195.644128 |
195.644128 |
-91.288256 |
3.758864e-19 |
|
* |
|
| XEC.9 |
305 |
138 |
194.894561 |
194.894561 |
-89.789121 |
1.775562e-19 |
|
* |
|
| XEC.30 |
135 |
138 |
194.239998 |
194.239998 |
-88.479996 |
9.223014e-20 |
|
* |
|
| |||||
ML.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| ML.1 |
13 |
140 |
13.599755 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
139 |
12.580304 |
12.580304 |
-1.160607 |
7.942632e+03 |
* |
* |
|
| KP.3.3.4 |
292 |
140 |
10.380879 |
0.380879 |
23.238242 |
3.995506e-02 |
* |
* |
|
| MC.25 |
26 |
144 |
7.903615 |
-18.702477 |
61.404955 |
2.066489e-10 |
|
|
|
| MC.8.1 |
174 |
140 |
7.444087 |
-8.615746 |
41.231492 |
4.955562e-06 |
|
* |
|
| KP.4.1 |
198 |
140 |
7.294941 |
-2.705059 |
29.410119 |
1.827146e-03 |
* |
* |
|
| LF.7.9.1 |
48 |
144 |
7.068786 |
-11.276717 |
46.553434 |
3.466327e-07 |
|
|
|
| KR.1 |
62 |
144 |
6.968144 |
-18.073991 |
60.147982 |
3.860709e-10 |
|
|
|
| MC.13.2 |
74 |
144 |
6.777607 |
-11.567896 |
47.135792 |
2.580790e-07 |
|
|
|
| MC.21 |
25 |
144 |
6.597363 |
-11.748140 |
47.496280 |
2.155657e-07 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3896_G|A, 4184_G|A, 4321_C|T, 6183_A|G, 6226_T|C, 7842_A|G, 8293_C|T, 8393_G|A, 8869_T|C, 9344_C|T, 9424_A|G,
9534_C|T, 9565_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18105_G|T, 18163_A|G, 18294_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21766_A|T, 21767_21772, 21941_G|T, 21987_G|A, 21992_21994, 22000_C|T, 22009_C|T, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28618_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29171_C|T, 29510_A|C
Case 72 (XEC): USA/CA-CDPH-500146886/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: XEC.8 + LC.1 + XEC.8 | BC BR: 8-9, 11-12 | BC BR coord: 3566 - 3567, 4330 - 4331 |
| Direction L1: << | Initial region span: 1-8,9-11,14-144 | Gap history (edge excluded): 8-14 -> 11-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.41e-01 | |
| Rec. model vs L1: 1.86e-08 | Rec. model vs L2: 7.77e-122 | |
| Flags: Model_2BP_Best | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
8 |
19.202242 |
None |
None |
None |
* |
* |
* |
| |||||
LC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LC.1 |
10 |
11 |
10.630590 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.5.1.36 |
33 |
11 |
9.947494 |
9.947494 |
-11.894987 |
0.504090 |
* |
* |
|
| NY.7 |
36 |
11 |
9.637339 |
9.637339 |
-11.274677 |
0.369723 |
* |
* |
|
| JN.1.1.3 |
30 |
11 |
9.126513 |
9.126513 |
-10.253026 |
0.222017 |
* |
* |
|
| KP.4.1 |
198 |
11 |
8.332992 |
8.332992 |
-8.665985 |
0.100761 |
* |
* |
|
| KL.1 |
39 |
11 |
8.171002 |
8.171002 |
-8.342003 |
0.085435 |
* |
* |
|
| XBB.1.5.25 |
43 |
11 |
7.838524 |
7.838524 |
-7.677047 |
0.061421 |
* |
* |
|
| XBB.2.3.2 |
378 |
10 |
7.121335 |
1.952073 |
4.095854 |
0.000170 |
* |
* |
|
| XBB.1.16.14 |
142 |
11 |
6.878736 |
6.878736 |
-5.757472 |
0.023518 |
* |
* |
|
| BE.1.3 |
218 |
11 |
6.440873 |
6.440873 |
-4.881746 |
0.015146 |
* |
* |
|
| |||||
XEC.8 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
14 |
230.814875 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
14 |
224.156876 |
208.875386 |
-115.750773 |
6.591961e-10 |
|
* |
|
| XEC.2.2 |
273 |
14 |
218.046162 |
193.118221 |
-84.236442 |
9.477747e-17 |
|
* |
|
| KP.3.3 |
1715 |
15 |
211.959277 |
205.883036 |
-109.766072 |
3.314928e-11 |
|
* |
|
| XEC.32 |
42 |
14 |
211.675701 |
210.998210 |
-119.996420 |
5.519382e-09 |
|
* |
|
| XEC.4 |
192 |
14 |
209.961763 |
209.225965 |
-116.451929 |
9.354438e-10 |
|
* |
|
| XEC.31 |
66 |
14 |
202.380560 |
201.657267 |
-101.314535 |
4.824013e-13 |
|
* |
|
| XEC.28 |
39 |
14 |
201.989329 |
194.232704 |
-86.465408 |
2.890303e-16 |
|
* |
|
| XEC.14 |
193 |
14 |
201.687488 |
200.968193 |
-99.936386 |
2.431738e-13 |
|
* |
|
| XEC.19 |
59 |
14 |
201.664230 |
194.146789 |
-86.293579 |
2.641538e-16 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3949_T|C, 4184_G|A, 4321_C|T, 5365_C|T, 5800_G|A, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10460_A|G, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18739_G|A, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22116_A|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23608_G|T, 23854_C|A, 23948_G|T, 24376_T|C, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26822_C|T, 26833_C|T, 26858_C|T, 27134_T|C, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): USA/CA-CDPH-500146959/2025
| Target: 5350 samples | Number of changes: 139 | |
| BC: XEC.4.3 + XEC.28 | BC BR: 12-13 | BC BR coord: 5304 - 5305 |
| Direction L1: << | Initial region span: 1-5,13-139 | Gap history (edge excluded): 5-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.81e-42 | Rec. model vs L2: 3.85e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.4.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.3 |
10 |
5 |
10.690412 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.12 |
71 |
5 |
7.632120 |
-3.009515 |
54.019029 |
4.573003e-02 |
* |
* |
|
| XEC.18 |
165 |
5 |
7.475508 |
-3.155902 |
54.311804 |
3.955750e-02 |
* |
* |
|
| KP.3.1.1 |
12013 |
12 |
5.510809 |
5.510809 |
36.978383 |
2.292928e+02 |
* |
|
|
| GJ.1.1 |
34 |
3 |
4.903037 |
-48.153258 |
144.306517 |
1.132341e-21 |
|
|
|
| BA.2.9.5 |
117 |
3 |
4.738576 |
-52.375476 |
152.750953 |
1.664387e-23 |
|
|
|
| BN.1.2.4 |
31 |
3 |
4.724144 |
-62.625128 |
173.250255 |
5.884858e-28 |
|
|
|
| BA.5.5 |
23560 |
5 |
4.497932 |
-11.484322 |
70.968644 |
9.540163e-06 |
|
* |
|
| XEC.29 |
135 |
9 |
4.381687 |
-3.478890 |
54.957779 |
2.858137e-02 |
* |
|
|
| BQ.1.1.61 |
45 |
3 |
4.328996 |
-49.500977 |
147.001953 |
2.950197e-22 |
|
|
|
| |||||
XEC.28 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.28 |
39 |
13 |
271.616993 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
7 |
271.327088 |
268.742601 |
-271.485203 |
5.669893e-02 |
* |
|
|
| XEC.14 |
193 |
4 |
267.240268 |
258.939453 |
-251.878906 |
3.128365e-06 |
|
|
|
| XEC.39 |
155 |
7 |
264.205192 |
252.702429 |
-239.404858 |
6.099860e-09 |
|
|
|
| XEC.31 |
66 |
11 |
261.944657 |
259.797799 |
-253.595599 |
7.392830e-06 |
|
|
|
| XEC.9 |
305 |
4 |
260.403643 |
253.284773 |
-240.569546 |
1.094919e-08 |
|
|
|
| XEC.17 |
13 |
11 |
259.858296 |
257.711438 |
-249.422875 |
9.143979e-07 |
|
|
|
| XEC.19 |
59 |
13 |
259.077815 |
259.077815 |
-252.155630 |
3.598476e-06 |
|
* |
|
| MC.24.1 |
25 |
11 |
257.454382 |
255.307524 |
-244.615049 |
8.295231e-08 |
|
|
|
| XEC.15 |
127 |
11 |
256.939211 |
254.792353 |
-243.584705 |
4.931685e-08 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 1150_C|T, 2060_G|A, 2790_C|T, 2902_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3768_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10156_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14346_G|A, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29510_A|C
Case 72 (XEC): USA/CA-CDPH-500146960/2025
| Target: 5350 samples | Number of changes: 139 | |
| BC: XEC.4.3 + XEC.14 | BC BR: 4-5 | BC BR coord: 1153 - 1154 |
| Direction L1: << | Initial region span: 1-4,5-139 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.08e-27 | Rec. model vs L2: 3.85e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.4.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.3 |
10 |
4 |
10.581513 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3.10 |
55 |
4 |
9.569912 |
9.569912 |
-11.139824 |
0.364219 |
* |
* |
|
| JN.1.34 |
83 |
4 |
8.927300 |
8.927300 |
-9.854600 |
0.191092 |
* |
* |
|
| KS.2 |
18 |
4 |
8.837955 |
8.837955 |
-9.675911 |
0.175520 |
* |
* |
|
| MC.10 |
221 |
4 |
8.648716 |
8.648716 |
-9.297431 |
0.145148 |
* |
* |
|
| KP.2.3.13 |
25 |
4 |
8.566610 |
8.566610 |
-9.133220 |
0.133320 |
* |
* |
|
| JN.1.40 |
26 |
4 |
8.488168 |
8.488168 |
-8.976337 |
0.123687 |
* |
* |
|
| LZ.1 |
28 |
4 |
8.453281 |
8.453281 |
-8.906562 |
0.119433 |
* |
* |
|
| NY.7 |
36 |
4 |
8.201967 |
8.201967 |
-8.403933 |
0.092551 |
* |
* |
|
| JN.1.48.1 |
53 |
4 |
7.776727 |
7.776727 |
-7.553455 |
0.060507 |
* |
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
5 |
277.240268 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.28 |
39 |
8 |
274.029392 |
271.367026 |
-250.734052 |
2.808794e-03 |
* |
|
|
| XEC.9 |
305 |
5 |
270.403643 |
270.403643 |
-248.807286 |
1.075467e-03 |
* |
* |
|
| XEC.2 |
921 |
8 |
270.267362 |
251.343484 |
-210.686967 |
5.674719e-12 |
|
|
|
| XEC.18 |
165 |
1 |
267.652679 |
260.292150 |
-228.584300 |
4.352197e-08 |
|
|
|
| XEC.17 |
13 |
8 |
267.098377 |
264.461986 |
-236.923971 |
2.816544e-06 |
|
|
|
| MC.24.1 |
25 |
8 |
264.694464 |
261.404146 |
-230.808292 |
1.327232e-07 |
|
|
|
| XEC.29 |
135 |
5 |
264.350938 |
264.350938 |
-236.701875 |
2.523156e-06 |
|
* |
|
| XEC.15 |
127 |
8 |
264.097279 |
261.460888 |
-230.921775 |
1.402275e-07 |
|
|
|
| XEC.32 |
42 |
8 |
263.855281 |
261.218890 |
-230.437780 |
1.103068e-07 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1150_C|T, 2060_G|A, 2790_C|T, 2902_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10156_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14346_G|A, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29510_A|C
Case 72 (XEC): USA/CA-CDPH-500146970/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.4 + MC.11 | BC BR: 140-141 | BC BR coord: 28883 - 28884 |
| Direction L1: >> | Initial region span: 1-135,141-143 | Gap history (edge excluded): 135-141 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.26e-06 | Rec. model vs L2: 8.78e-121 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
135 |
272.368594 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
135 |
245.645723 |
241.867956 |
-183.735912 |
2.549816e-12 |
|
* |
|
| XEC.39 |
155 |
135 |
245.430082 |
241.639328 |
-183.278655 |
2.025914e-12 |
|
* |
|
| XEC.12 |
71 |
135 |
244.154187 |
240.376420 |
-180.752840 |
5.717926e-13 |
|
* |
|
| KP.3.3 |
1715 |
141 |
240.977300 |
237.369000 |
-174.737999 |
2.832589e-14 |
|
|
|
| MC.24.1 |
25 |
135 |
240.527506 |
236.095813 |
-172.191626 |
7.915132e-15 |
|
* |
|
| XEC.32 |
42 |
135 |
236.999882 |
233.222115 |
-166.444230 |
4.465412e-16 |
|
* |
|
| XEC.8 |
592 |
135 |
232.153215 |
228.375448 |
-156.750895 |
3.513215e-18 |
|
* |
|
| XEC.24 |
11 |
135 |
231.567155 |
221.586271 |
-143.172541 |
3.952258e-21 |
|
* |
|
| XEC.18 |
165 |
135 |
231.024563 |
221.565082 |
-143.130165 |
3.873998e-21 |
|
* |
|
| |||||
MC.11 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.11 |
393 |
141 |
6.592898 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1 |
1957 |
137 |
5.468303 |
5.040140 |
-2.080280 |
0.211189 |
* |
|
|
| KP.3.1.1 |
12013 |
141 |
3.166689 |
3.166689 |
1.666621 |
0.032387 |
* |
* |
|
| JN.1 |
17255 |
141 |
2.880376 |
2.880376 |
2.239248 |
0.024355 |
* |
* |
|
| KP.3.3.1 |
211 |
136 |
0.527997 |
-6.481903 |
20.963806 |
0.000002 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2054_G|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6322_T|C, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G,
18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20157_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25039_T|C, 25207_C|T, 25521_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28531_C|T, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29468_G|C, 29510_A|C
Case 72 (XEC): USA/CA-CDPH-500146971/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.32 + XBB.1.5.32 + XEC.32 | BC BR: 3-4, 6-7 | BC BR coord: 896 - 897, 1539 - 1540 |
| Direction L1: << | Initial region span: 1-3,4-6,7-143 | Gap history (edge excluded): 3-7 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.70e-07 | |
| Rec. model vs L1: 1.29e-20 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEC.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
3 |
4.718819 |
None |
None |
None |
* |
* |
* |
| |||||
XBB.1.5.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XBB.1.5.32 |
734 |
6 |
10.203883 |
NaN |
NaN |
NaN |
* |
* |
* |
| GC.2 |
35 |
4 |
7.204670 |
-12.795330 |
31.590660 |
1.026188e-10 |
|
|
|
| BA.2.9.1 |
448 |
4 |
7.204670 |
-12.795330 |
31.590660 |
1.026188e-10 |
|
|
|
| GC.1 |
14 |
4 |
7.204670 |
-12.795330 |
31.590660 |
1.026188e-10 |
|
|
|
| XBB.1.5.21 |
611 |
4 |
7.204670 |
-12.795330 |
31.590660 |
1.026188e-10 |
|
|
|
| XBB.2.3 |
695 |
6 |
5.855443 |
5.855443 |
-5.710885 |
1.290681e-02 |
* |
* |
|
| XBB.1.5.76 |
79 |
5 |
5.807614 |
-4.192386 |
14.384772 |
5.601843e-07 |
|
* |
|
| BQ.1.1.68 |
694 |
6 |
5.572080 |
5.572080 |
-5.144161 |
9.706107e-03 |
* |
* |
|
| LY.1 |
178 |
5 |
5.281555 |
-4.718445 |
15.436890 |
3.297273e-07 |
|
* |
|
| BA.5.2.54 |
62 |
4 |
5.023446 |
-14.976554 |
35.953108 |
1.160019e-11 |
|
|
|
| |||||
XEC.32 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
7 |
256.092276 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.15 |
127 |
7 |
253.778424 |
258.481370 |
-214.962740 |
9.729575e-02 |
* |
* |
|
| XEC.2 |
921 |
8 |
252.085212 |
246.766770 |
-191.533540 |
7.949394e-07 |
|
* |
|
| XEC.28 |
39 |
7 |
251.832118 |
256.472318 |
-210.944637 |
1.303653e-02 |
* |
* |
|
| XEC.9 |
305 |
7 |
251.375146 |
256.057623 |
-210.115245 |
8.651695e-03 |
* |
* |
|
| XEC.8 |
592 |
7 |
249.630700 |
254.280707 |
-206.561414 |
1.459006e-03 |
* |
* |
|
| XEC.14 |
193 |
7 |
245.674335 |
250.367016 |
-198.734033 |
2.909338e-05 |
* |
* |
|
| XEC.17 |
13 |
7 |
244.461986 |
249.180805 |
-196.361610 |
8.895189e-06 |
|
* |
|
| XEC.29 |
135 |
7 |
243.813481 |
248.532300 |
-195.064600 |
4.643696e-06 |
|
* |
|
| MC.24.1 |
25 |
7 |
241.404146 |
246.082143 |
-190.164287 |
4.007212e-07 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1230_A|G, 1302_C|T, 1537_T|C, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14403_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19255_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23464_T|C,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28498_C|T,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29708_C|T
Case 72 (XEC): USA/CA-CDPH-500146973/2025
| Target: 5350 samples | Number of changes: 140 | |
| BC: XBB.2.3.11 + XEC.32 | BC BR: 4-5 | BC BR coord: 1539 - 1540 |
| Direction L1: << | Initial region span: 1-4,5-140 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.40e-14 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XBB.2.3.11 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XBB.2.3.11 |
240 |
4 |
6.996488 |
NaN |
NaN |
NaN |
* |
* |
* |
| DY.1 |
151 |
3 |
6.634900 |
-3.365100 |
16.730200 |
0.000032 |
* |
* |
|
| BQ.1.1.68 |
694 |
4 |
5.994129 |
5.994129 |
-1.988257 |
0.367879 |
* |
* |
|
| BA.2.9.4 |
37 |
3 |
5.920999 |
-4.079001 |
18.158003 |
0.000015 |
* |
* |
|
| BF.7.4.2 |
154 |
3 |
5.181596 |
-4.818404 |
19.636807 |
0.000007 |
|
* |
|
| EY.1 |
81 |
3 |
4.707001 |
-5.292999 |
20.585998 |
0.000005 |
|
* |
|
| BA.5.2.18 |
582 |
3 |
4.359080 |
-5.640920 |
21.281840 |
0.000003 |
|
* |
|
| BA.2.3.13 |
70 |
3 |
4.184809 |
-5.815191 |
21.630382 |
0.000003 |
|
* |
|
| XBB.1.5.32 |
734 |
4 |
4.143742 |
4.143742 |
1.712516 |
0.057844 |
* |
* |
|
| CH.1.1.15 |
87 |
3 |
3.967396 |
-6.032604 |
22.065208 |
0.000002 |
|
* |
|
| |||||
XEC.32 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
5 |
266.092276 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.15 |
127 |
5 |
263.778424 |
263.778424 |
-233.556848 |
9.926125e-02 |
* |
* |
|
| XEC.2 |
921 |
6 |
262.085212 |
252.085212 |
-210.170424 |
8.273815e-07 |
|
* |
|
| XEC.28 |
39 |
5 |
261.832118 |
261.832118 |
-229.664237 |
1.412230e-02 |
* |
* |
|
| XEC.9 |
305 |
5 |
261.375146 |
261.375146 |
-228.750292 |
8.959866e-03 |
* |
* |
|
| XEC.8 |
592 |
5 |
259.630700 |
259.630700 |
-225.261399 |
1.564796e-03 |
* |
* |
|
| XEC.14 |
193 |
5 |
255.674335 |
255.674335 |
-217.348670 |
2.997940e-05 |
* |
* |
|
| XEC.17 |
13 |
5 |
254.461986 |
254.461986 |
-214.923971 |
8.895189e-06 |
|
* |
|
| XEC.29 |
135 |
5 |
253.813481 |
253.813481 |
-213.626962 |
4.666972e-06 |
|
* |
|
| MC.24.1 |
25 |
5 |
251.404146 |
251.404146 |
-208.808292 |
4.191655e-07 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 1302_C|T, 1537_T|C, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T,
18894_C|T, 19255_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23464_T|C, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28498_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29510_A|C, 29708_C|T
Case 72 (XEC): USA/CA-CDPH-500147141/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: BF.7.14.4 + XEC.2 | BC BR: 3-4 | BC BR coord: 1086 - 1087 |
| Direction L1: << | Initial region span: 1-3,15-145 | Gap history (edge excluded): 3-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 1.15e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BF.7.14.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BF.7.14.4 |
36 |
3 |
8.723240 |
NaN |
NaN |
NaN |
* |
* |
* |
| BF.7.14.1 |
39 |
3 |
8.723240 |
8.723240 |
-9.446479 |
1.000000 |
* |
* |
|
| BF.7.14 |
256 |
3 |
8.699648 |
8.699648 |
-9.399296 |
0.975310 |
* |
* |
|
| BF.7.14.5 |
65 |
3 |
8.691987 |
8.691987 |
-9.383974 |
0.965605 |
* |
* |
|
| BF.7.14.6 |
77 |
3 |
7.688789 |
7.688789 |
-7.377579 |
0.355226 |
* |
* |
|
| BQ.1.1.1 |
1179 |
4 |
6.377713 |
4.041056 |
-0.082112 |
0.009233 |
* |
* |
|
| BF.7.26 |
89 |
4 |
6.148014 |
4.223304 |
-0.446607 |
0.011109 |
* |
* |
|
| BA.2.75.1 |
232 |
3 |
5.906902 |
5.906902 |
-3.813803 |
0.059606 |
* |
* |
|
| BA.5.2.49 |
19 |
3 |
5.778801 |
5.778801 |
-3.557601 |
0.052602 |
* |
* |
|
| BQ.1.32 |
36 |
3 |
5.139721 |
5.139721 |
-2.279441 |
0.027737 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
256.201769 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
8 |
240.910533 |
217.190855 |
-112.381709 |
6.175010e-06 |
|
|
|
| XEC.19 |
59 |
29 |
225.880841 |
184.868632 |
-47.737264 |
5.678584e-20 |
|
|
|
| XEK.1.2 |
33 |
29 |
225.131652 |
130.854745 |
60.290511 |
1.976167e-43 |
|
|
|
| XEC.33 |
169 |
29 |
224.551586 |
194.553372 |
-67.106744 |
9.128136e-16 |
|
|
|
| XEC.2.1 |
265 |
29 |
224.339400 |
165.353465 |
-8.706929 |
1.901005e-28 |
|
|
|
| XEC.14 |
193 |
29 |
223.332651 |
189.092540 |
-56.185081 |
3.882703e-18 |
|
|
|
| KP.3.3 |
1715 |
8 |
223.213774 |
214.490035 |
-106.980070 |
4.149947e-07 |
|
|
|
| XEC.2.2.1 |
46 |
29 |
222.329755 |
148.013289 |
25.973423 |
5.601662e-36 |
|
|
|
| XEC.29 |
135 |
26 |
216.040490 |
175.948870 |
-29.897740 |
7.591599e-24 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 1085_G|T, 1387_C|T, 1471_C|T, 2060_G|A, 2395_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4754_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 9693_C|T, 10029_C|T, 10198_C|T, 10199_A|T, 10447_G|A, 10449_C|A, 10702_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25668_A|G, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27476_C|T, 27604_G|A, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29499_A|T, 29510_A|C
Case 72 (XEC): USA/CA-LACPHL-AY11141/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.2 + XEC.4.1 + XEC.2 | BC BR: 4-5, 7-8 | BC BR coord: 941 - 942, 2789 - 2790 |
| Direction L1: << | Initial region span: 1-3,6-7,8-147 | Gap history (edge excluded): 3-8 -> 3-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.23e-07 | |
| Rec. model vs L1: 7.86e-16 | Rec. model vs L2: 6.82e-52 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
3 |
4.681558 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.4.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.1 |
68 |
6 |
11.014494 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.11 |
16 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.25 |
13 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.4.3 |
10 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.4.1.4 |
23 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.4 |
192 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.38 |
34 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.36 |
30 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.35.1 |
28 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| XEC.34 |
22 |
7 |
6.286401 |
-13.713599 |
33.427198 |
4.007212e-07 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
8 |
239.111912 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
7 |
227.764683 |
226.984367 |
-149.968735 |
1.059816e-07 |
|
* |
|
| XEC.39 |
155 |
7 |
224.435789 |
223.894404 |
-143.788808 |
4.822372e-09 |
|
* |
|
| XEC.36 |
30 |
7 |
223.999669 |
212.432088 |
-120.864175 |
5.059114e-14 |
|
* |
|
| XEC.4 |
192 |
7 |
222.819634 |
211.236304 |
-118.472607 |
1.531414e-14 |
|
* |
|
| XEC.33 |
169 |
7 |
221.575180 |
209.983645 |
-115.967290 |
4.387574e-15 |
|
* |
|
| XEC.8 |
592 |
7 |
218.363432 |
206.738933 |
-109.477866 |
1.709774e-16 |
|
* |
|
| XEC.17 |
13 |
7 |
217.101708 |
205.534126 |
-107.068251 |
5.124057e-17 |
|
* |
|
| XEC.32 |
42 |
7 |
213.858612 |
202.291030 |
-100.582060 |
1.996772e-18 |
|
* |
|
| MC.24.1 |
25 |
7 |
213.494994 |
202.540517 |
-101.081034 |
2.563905e-18 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 936_C|T, 1711_T|C, 1714_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11137_T|A, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13665_C|T, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19524_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21411_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24382_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25453_A|C, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28775_C|A, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759, 29785_T|C
Case 72 (XEC): USA/CA-LACPHL-AY11147/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.33 + XEC.2 | BC BR: 14-15 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-14,16-145 | Gap history (edge excluded): 14-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.90e-01 | |
| Rec. model vs L1: 5.46e-32 | Rec. model vs L2: 3.98e-24 | |
| Flags: Model_1BP_Best | | |
XEC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.33 |
169 |
14 |
17.783166 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
14 |
17.681102 |
17.681102 |
-3.362204 |
9.003245e-01 |
* |
* |
|
| XEC.16 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.4.3 |
10 |
12 |
15.079158 |
-7.384864 |
46.769728 |
1.171677e-11 |
|
|
|
| XEC.32 |
42 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.17 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.22 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.18.3 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.24 |
11 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.25 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
271.351893 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
28 |
245.024085 |
230.424664 |
-184.849328 |
3.710592e-14 |
|
|
|
| XEC.29 |
135 |
16 |
242.299684 |
232.299684 |
-188.599368 |
2.419610e-13 |
|
* |
|
| XEC.25 |
13 |
28 |
237.617708 |
216.556357 |
-157.112714 |
3.513813e-20 |
|
|
|
| XEC.30 |
135 |
28 |
234.867262 |
220.260406 |
-164.520813 |
1.428367e-18 |
|
|
|
| XEC.2.1 |
265 |
28 |
229.985151 |
205.687253 |
-135.374506 |
6.683403e-25 |
|
|
|
| XEC.5 |
126 |
28 |
227.124600 |
212.525180 |
-149.050360 |
6.245568e-22 |
|
|
|
| XEC.18 |
165 |
28 |
226.505286 |
211.905866 |
-147.811731 |
3.359768e-22 |
|
|
|
| XEC.9 |
305 |
24 |
225.734380 |
215.706172 |
-155.412344 |
1.501856e-20 |
|
|
|
| XEC.39 |
155 |
5 |
223.777073 |
209.859526 |
-143.719052 |
4.346875e-23 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 915_A|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6638_C|T, 7842_A|G, 7852_T|C, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11200_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16308_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22594_C|T, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25613_C|T, 26060_C|T,
26093_A|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY11224/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.22 + KP.3.3 | BC BR: 14-15 | BC BR coord: 7118 - 7119 |
| Direction L1: << | Initial region span: 1-12,15-147 | Gap history (edge excluded): 12-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.20e-03 | |
| Rec. model vs L1: 6.95e-48 | Rec. model vs L2: 2.62e-18 | |
| Flags: Model_1BP_Best | | |
XEC.22 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.22 |
23 |
12 |
17.007649 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.24 |
11 |
11 |
11.469367 |
-4.920842 |
41.841683 |
1.791576e-07 |
|
* |
|
| XEC.8.1 |
12 |
11 |
11.469367 |
-5.007853 |
42.015706 |
1.637377e-07 |
|
* |
|
| XEC.32 |
42 |
11 |
11.469367 |
-4.920842 |
41.841683 |
1.791576e-07 |
|
* |
|
| XEC.16 |
23 |
11 |
11.469367 |
-4.920842 |
41.841683 |
1.791576e-07 |
|
* |
|
| XEC.17 |
13 |
11 |
11.469367 |
-4.920842 |
41.841683 |
1.791576e-07 |
|
* |
|
| XEC.25 |
13 |
11 |
11.469367 |
-4.920842 |
41.841683 |
1.791576e-07 |
|
* |
|
| XEC.4.3 |
10 |
11 |
11.469367 |
-11.575692 |
55.151383 |
2.306776e-10 |
|
* |
|
| XEC.18.3 |
13 |
11 |
11.469367 |
-4.920842 |
41.841683 |
1.791576e-07 |
|
* |
|
| XEC.4.1.4 |
23 |
11 |
11.469367 |
-16.646216 |
65.292432 |
1.449214e-12 |
|
* |
|
| |||||
KP.3.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
15 |
228.780238 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
14 |
224.859125 |
221.262449 |
-166.524898 |
5.421326e-04 |
* |
* |
|
| XEC.18 |
165 |
14 |
218.824983 |
215.215192 |
-154.430383 |
1.284681e-06 |
|
* |
|
| XEC.8 |
592 |
14 |
204.873712 |
201.263921 |
-126.527842 |
1.123020e-12 |
|
* |
|
| XEK.1 |
88 |
15 |
203.910097 |
203.910097 |
-131.820193 |
1.581598e-11 |
|
* |
|
| XEC.2.2 |
273 |
14 |
203.658322 |
200.048531 |
-124.097062 |
3.332112e-13 |
|
* |
|
| XEC.31 |
66 |
14 |
202.279959 |
198.670168 |
-121.340337 |
8.382878e-14 |
|
* |
|
| XEC.28 |
39 |
14 |
201.637429 |
198.027638 |
-120.055277 |
4.420228e-14 |
|
* |
|
| XEC.19 |
59 |
14 |
201.386508 |
197.776717 |
-119.553434 |
3.425308e-14 |
|
* |
|
| XEC.14 |
193 |
14 |
201.348784 |
197.738993 |
-119.477985 |
3.307496e-14 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1715_A|G, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4810_C|T, 5012_G|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11398_T|C, 11727_G|A, 12781_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22498_C|T, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24912_C|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25542_T|C, 25584_C|T, 25606_G|A,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27532_C|T, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29422_G|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY11296/2025
| Target: 5350 samples | Number of changes: 140 | |
| BC: XEC.4 + BF.5.2 | BC BR: 137-138 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-137,138-140 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.25e-09 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
137 |
288.911961 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
137 |
284.454555 |
284.454555 |
-276.909110 |
1.162032e-02 |
* |
* |
|
| XEC.8 |
592 |
140 |
277.301170 |
272.920885 |
-253.841771 |
1.136662e-07 |
|
|
|
| MC.24.1 |
25 |
137 |
276.706342 |
276.706342 |
-261.412684 |
5.005366e-06 |
|
* |
|
| XEC.9 |
305 |
137 |
273.619054 |
273.619054 |
-255.238108 |
2.288956e-07 |
|
* |
|
| XEC.19 |
59 |
137 |
273.331153 |
273.331153 |
-254.662307 |
1.712742e-07 |
|
* |
|
| XEC.30 |
135 |
137 |
271.256368 |
271.256368 |
-250.512736 |
2.150458e-08 |
|
* |
|
| XEC.32 |
42 |
137 |
271.190311 |
271.190311 |
-250.380622 |
2.015124e-08 |
|
* |
|
| XEC.2 |
921 |
140 |
270.164997 |
265.683259 |
-239.366518 |
8.194277e-11 |
|
|
|
| XEC.36 |
30 |
137 |
267.200870 |
267.200870 |
-242.401739 |
3.727922e-10 |
|
* |
|
| |||||
BF.5.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BF.5.2 |
12 |
138 |
8.862472 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.5.12 |
97 |
138 |
8.485647 |
8.485647 |
-10.971293 |
0.687289 |
* |
* |
|
| ER.1.1 |
61 |
138 |
6.859675 |
6.859675 |
-7.719350 |
0.135335 |
* |
* |
|
| XEK.1 |
88 |
138 |
6.359561 |
6.359561 |
-6.719122 |
0.082085 |
* |
* |
|
| BF.11.1 |
311 |
138 |
6.260167 |
6.260167 |
-6.520334 |
0.074274 |
* |
* |
|
| MC.10.2.1 |
11 |
138 |
6.233135 |
6.233135 |
-6.466269 |
0.072440 |
* |
* |
|
| CJ.1.2 |
100 |
138 |
6.226827 |
6.226827 |
-6.453655 |
0.071719 |
* |
* |
|
| ML.1 |
13 |
138 |
6.217480 |
6.217480 |
-6.434961 |
0.071005 |
* |
* |
|
| XDY.6 |
11 |
138 |
6.099603 |
6.099603 |
-6.199207 |
0.063292 |
* |
* |
|
| XBB.1.5.106 |
16 |
138 |
5.969256 |
5.969256 |
-5.938511 |
0.055576 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 2939_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5704_G|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G,
18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21575_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A,
29077_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY11453/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.4 + XEC.2 | BC BR: 12-13 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-12,26-146 | Gap history (edge excluded): 12-26 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.33e-01 | |
| Rec. model vs L1: 4.25e-26 | Rec. model vs L2: 9.34e-25 | |
| Flags: Model_1BP_Best | | |
XEC.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
12 |
24.875579 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.25 |
13 |
6 |
17.475308 |
16.862247 |
-7.724494 |
3.304682e-04 |
* |
|
|
| KP.3.1.1 |
12013 |
24 |
16.601492 |
10.301168 |
5.397665 |
4.679053e-07 |
|
|
|
| XEC.18 |
165 |
12 |
15.393039 |
15.393039 |
-4.786078 |
7.636394e-05 |
* |
* |
|
| MC.24.1 |
25 |
12 |
15.369184 |
15.369184 |
-4.738367 |
7.447850e-05 |
* |
* |
|
| XEC.19 |
59 |
12 |
14.459938 |
14.459938 |
-2.919875 |
2.997940e-05 |
* |
* |
|
| XEC.9 |
305 |
6 |
13.184990 |
12.525087 |
0.949825 |
4.329753e-06 |
|
|
|
| XEC.8 |
592 |
6 |
13.170579 |
12.516266 |
0.967467 |
4.286672e-06 |
|
|
|
| KP.3.1.12 |
39 |
4 |
11.473441 |
-7.416719 |
40.833437 |
9.476134e-15 |
|
|
|
| JN.1 |
17255 |
16 |
10.826448 |
4.879750 |
16.240501 |
2.071485e-09 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
26 |
256.615521 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
26 |
248.908513 |
201.011461 |
-112.022921 |
9.291656e-19 |
|
* |
|
| XEC.31 |
66 |
26 |
245.197181 |
211.304463 |
-132.608926 |
2.748874e-14 |
|
* |
|
| XEC.33 |
169 |
29 |
239.796743 |
201.045862 |
-112.091724 |
9.622622e-19 |
|
|
|
| XEC.8 |
592 |
26 |
239.523761 |
215.185122 |
-140.370245 |
1.331121e-12 |
|
* |
|
| KP.3.3 |
1715 |
8 |
236.865542 |
227.512277 |
-165.024554 |
2.998450e-07 |
|
|
|
| XEC.2.2 |
273 |
26 |
236.634910 |
195.099581 |
-100.199163 |
2.520071e-21 |
|
* |
|
| XEC.9 |
305 |
26 |
236.238169 |
196.262636 |
-102.525271 |
8.079152e-21 |
|
* |
|
| XEC.14 |
193 |
26 |
235.597621 |
201.704903 |
-113.409807 |
1.861777e-18 |
|
* |
|
| XEK.5 |
28 |
26 |
235.525893 |
182.299674 |
-74.599348 |
6.957342e-27 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1102_C|T, 2060_G|A, 2790_C|T, 2939_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5784_C|T, 6183_A|G, 6361_C|T, 7842_A|G, 7865_G|T, 8293_C|T, 8393_G|A,
8950_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10093_T|A, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20483_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29272_C|T, 29510_A|C, 29670_C|T, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY11538/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.2 + XEC.9 + XEC.2 | BC BR: 4-5, 14-15 | BC BR coord: 896 - 897, 6026 - 6027 |
| Direction L1: << | Initial region span: 1-4,6-14,15-145 | Gap history (edge excluded): 4-15 -> 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 2.71e-05 | |
| Rec. model vs L1: 1.20e-23 | Rec. model vs L2: 2.75e-33 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
4 |
3.75823 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.9 |
305 |
6 |
18.888817 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.10 |
51 |
8 |
16.450958 |
-18.842803 |
59.685607 |
9.012443e-13 |
|
|
|
| JN.1.7.1 |
120 |
8 |
15.377918 |
-14.622082 |
51.244164 |
6.162213e-11 |
|
|
|
| KP.3.3 |
1715 |
8 |
14.119585 |
-4.150811 |
30.301622 |
2.171701e-06 |
|
|
|
| JN.1.10 |
28 |
8 |
13.952536 |
-16.047464 |
54.094928 |
1.482064e-11 |
|
|
|
| MC.10.1 |
650 |
7 |
13.877320 |
-6.122680 |
34.245360 |
3.013480e-07 |
|
* |
|
| MC.1 |
932 |
7 |
13.850540 |
-6.149460 |
34.298920 |
2.939077e-07 |
|
* |
|
| MU.2.1 |
37 |
8 |
13.759752 |
-16.240248 |
54.480495 |
1.219494e-11 |
|
|
|
| KP.1.1 |
593 |
7 |
13.364870 |
-6.635130 |
35.270261 |
1.809582e-07 |
|
* |
|
| JN.1.32.1 |
55 |
8 |
13.335346 |
-16.664654 |
55.329309 |
7.972683e-12 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
287.015305 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
8 |
274.513147 |
264.627067 |
-241.254135 |
4.397434e-12 |
|
|
|
| XEC.4 |
192 |
6 |
259.202657 |
245.070275 |
-202.140550 |
1.414395e-20 |
|
|
|
| XEC.39 |
155 |
16 |
257.129964 |
241.835838 |
-195.671675 |
5.567088e-22 |
|
* |
|
| XEC.32 |
42 |
8 |
256.167762 |
250.422434 |
-212.844868 |
2.978833e-18 |
|
|
|
| XEC.9 |
305 |
6 |
255.461779 |
231.255438 |
-174.510876 |
1.415117e-26 |
|
|
|
| XEC.29 |
135 |
17 |
252.990085 |
232.755617 |
-177.511235 |
6.342116e-26 |
|
|
|
| XEK.1 |
88 |
17 |
243.910097 |
227.840467 |
-167.680934 |
4.652397e-28 |
|
|
|
| XEC.2.2 |
273 |
16 |
243.658322 |
228.340171 |
-168.680343 |
7.670506e-28 |
|
* |
|
| XEC.31 |
66 |
16 |
242.279959 |
226.968244 |
-165.936488 |
1.949129e-28 |
|
* |
|
|
Target sequence
, 241_C|T, 337_C|T, 670_T|G, 897_C|A, 1738_G|T, 2060_G|A, 2113_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5221_C|T, 6027_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12781_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23593_G|C, 23599_T|G, 23601_C|A, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25521_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY12004/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: KP.2.5 + XEC.14 | BC BR: 3-4 | BC BR coord: 678 - 679 |
| Direction L1: << | Initial region span: 1-3,5-141 | Gap history (edge excluded): 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.13e-145 | Rec. model vs L2: 1.66e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.5 |
66 |
3 |
9.391444 |
NaN |
NaN |
NaN |
* |
* |
* |
| CM.3 |
22 |
3 |
6.639909 |
6.639909 |
-7.279818 |
0.063928 |
* |
* |
|
| BQ.1.1.7 |
1146 |
4 |
6.349948 |
2.677297 |
0.645407 |
0.001213 |
* |
* |
|
| KP.5 |
77 |
3 |
6.000082 |
6.000082 |
-6.000164 |
0.033709 |
* |
* |
|
| BN.1.2.3 |
117 |
3 |
5.653341 |
5.653341 |
-5.306682 |
0.023873 |
* |
* |
|
| BQ.1.26 |
121 |
3 |
5.611641 |
5.611641 |
-5.223282 |
0.022823 |
* |
* |
|
| BA.5.2.48 |
267 |
3 |
5.234796 |
5.234796 |
-4.469593 |
0.015686 |
* |
* |
|
| BF.7.24 |
444 |
3 |
4.319240 |
4.319240 |
-2.638479 |
0.006282 |
* |
* |
|
| BQ.1.11 |
1938 |
3 |
3.937737 |
3.937737 |
-1.875474 |
0.004296 |
* |
* |
|
| BF.3 |
355 |
3 |
3.844681 |
3.844681 |
-1.689363 |
0.003907 |
* |
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
5 |
276.499648 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
5 |
271.990858 |
261.990858 |
-225.981716 |
1.099846e-02 |
* |
* |
|
| XEC.9 |
305 |
5 |
269.837039 |
259.837039 |
-221.674078 |
1.274757e-03 |
* |
* |
|
| XEC.3 |
29 |
8 |
264.226759 |
254.140514 |
-210.281029 |
4.286672e-06 |
|
|
|
| XEC.13 |
30 |
8 |
262.691703 |
252.605458 |
-207.210917 |
9.235878e-07 |
|
|
|
| XEC.29 |
135 |
16 |
261.793841 |
241.762275 |
-185.524550 |
1.801169e-11 |
|
|
|
| XEC.2 |
921 |
16 |
261.562400 |
231.368682 |
-164.737365 |
5.536494e-16 |
|
|
|
| XEC.18 |
165 |
8 |
259.889050 |
249.790648 |
-201.581295 |
5.532727e-08 |
|
|
|
| XEC.33 |
169 |
8 |
257.721668 |
247.605535 |
-197.211071 |
6.223085e-09 |
|
|
|
| XEC.30 |
135 |
8 |
256.872574 |
246.748818 |
-195.497635 |
2.646574e-09 |
|
|
|
|
Target sequence
, 241_C|T, 592_T|C, 670_T|G, 875_C|A, 897_C|A, 2060_G|A, 2644_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6912_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11020_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY12040/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.4 + XEC.2 | BC BR: 12-13 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-12,26-145 | Gap history (edge excluded): 12-26 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.33e-01 | |
| Rec. model vs L1: 4.25e-26 | Rec. model vs L2: 9.34e-25 | |
| Flags: Model_1BP_Best | | |
XEC.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
12 |
24.875579 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.25 |
13 |
6 |
17.475308 |
16.862247 |
-7.724494 |
3.304682e-04 |
* |
|
|
| KP.3.1.1 |
12013 |
24 |
16.601492 |
10.301168 |
5.397665 |
4.679053e-07 |
|
|
|
| XEC.18 |
165 |
12 |
15.393039 |
15.393039 |
-4.786078 |
7.636394e-05 |
* |
* |
|
| MC.24.1 |
25 |
12 |
15.369184 |
15.369184 |
-4.738367 |
7.447850e-05 |
* |
* |
|
| XEC.19 |
59 |
12 |
14.459938 |
14.459938 |
-2.919875 |
2.997940e-05 |
* |
* |
|
| XEC.9 |
305 |
6 |
13.184990 |
12.525087 |
0.949825 |
4.329753e-06 |
|
|
|
| XEC.8 |
592 |
6 |
13.170579 |
12.516266 |
0.967467 |
4.286672e-06 |
|
|
|
| KP.3.1.12 |
39 |
4 |
11.473441 |
-7.416719 |
40.833437 |
9.476134e-15 |
|
|
|
| JN.1 |
17255 |
16 |
10.826448 |
4.879750 |
16.240501 |
2.071485e-09 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
26 |
266.615521 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
26 |
258.908513 |
211.011461 |
-134.022921 |
9.291656e-19 |
|
* |
|
| XEC.31 |
66 |
26 |
255.197181 |
221.304463 |
-154.608926 |
2.748874e-14 |
|
* |
|
| XEC.33 |
169 |
29 |
249.796743 |
211.045862 |
-134.091724 |
9.622622e-19 |
|
|
|
| XEC.8 |
592 |
26 |
249.523761 |
225.185122 |
-162.370245 |
1.331121e-12 |
|
* |
|
| KP.3.3 |
1715 |
8 |
246.865542 |
237.512277 |
-187.024554 |
2.998450e-07 |
|
|
|
| XEC.2.2 |
273 |
26 |
246.634910 |
205.099581 |
-122.199163 |
2.520071e-21 |
|
* |
|
| XEC.9 |
305 |
26 |
246.238169 |
206.262636 |
-124.525271 |
8.079152e-21 |
|
* |
|
| XEC.14 |
193 |
26 |
245.597621 |
211.704903 |
-135.409807 |
1.861777e-18 |
|
* |
|
| XEK.5 |
28 |
26 |
245.525893 |
192.299674 |
-96.599348 |
6.957342e-27 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1102_C|T, 2060_G|A, 2790_C|T, 2939_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5784_C|T, 6183_A|G, 6361_C|T, 7842_A|G, 7865_G|T, 8293_C|T, 8393_G|A,
8950_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10093_T|A, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20483_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29272_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY12077/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.5 + XEC.2 | BC BR: 13-14 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-10,15-147 | Gap history (edge excluded): 10-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.35e-01 | |
| Rec. model vs L1: 1.29e-28 | Rec. model vs L2: 4.90e-25 | |
| Flags: Model_1BP_Best | | |
XEC.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.5 |
126 |
10 |
14.842864 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.33 |
169 |
10 |
13.426664 |
5.573522 |
20.852955 |
2.465970e-01 |
* |
* |
|
| XEC.15 |
127 |
10 |
12.993314 |
5.140172 |
21.719657 |
1.596135e-01 |
* |
* |
|
| MC.1.2 |
49 |
4 |
11.386334 |
-8.149519 |
48.299037 |
2.699579e-07 |
|
|
|
| MA.1.2 |
96 |
4 |
9.978552 |
-9.557301 |
51.114601 |
6.623876e-08 |
|
|
|
| KP.1.1.1 |
578 |
4 |
8.185275 |
-11.396450 |
54.792900 |
1.051987e-08 |
|
|
|
| LP.8.1.1 |
2345 |
4 |
6.779659 |
-19.354581 |
70.709161 |
3.673045e-12 |
|
|
|
| JN.1 |
17255 |
4 |
4.792390 |
-4.820399 |
41.640799 |
7.542175e-06 |
|
|
|
| MR.1 |
17 |
3 |
4.718819 |
-42.403648 |
116.807295 |
3.585407e-22 |
|
|
|
| MC.17.1 |
10 |
3 |
4.718819 |
-24.922394 |
81.844788 |
1.406622e-14 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
235.334694 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
16 |
235.222128 |
222.749103 |
-155.498207 |
7.539608e-02 |
* |
* |
|
| XEC.33 |
169 |
5 |
230.952196 |
220.067605 |
-150.135210 |
5.169393e-03 |
* |
|
|
| XEC.8 |
592 |
26 |
218.593270 |
205.772722 |
-121.545444 |
3.200368e-09 |
|
|
|
| XEC.2.2 |
273 |
26 |
215.557666 |
195.099581 |
-100.199163 |
7.397864e-14 |
|
|
|
| XEC.29 |
135 |
26 |
215.472903 |
188.653095 |
-87.306190 |
1.175110e-16 |
|
|
|
| XEC.2.1 |
265 |
26 |
215.367090 |
192.845563 |
-95.691126 |
7.758402e-15 |
|
|
|
| XEC.14 |
193 |
26 |
214.520377 |
201.704903 |
-113.409807 |
5.465393e-11 |
|
|
|
| XEK.5 |
28 |
26 |
214.448649 |
182.299674 |
-74.599348 |
2.042382e-19 |
|
|
|
| XEC.31 |
66 |
26 |
211.045951 |
198.230477 |
-106.460955 |
1.692186e-12 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 919_A|G, 2060_G|A, 2790_C|T, 3037_C|T, 3061_A|G, 3431_G|T, 3565_T|C, 3879_A|G, 4184_G|A, 4321_C|T, 5193_T|A, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 9711_C|T, 10029_C|T, 10198_C|T, 10432_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15614_A|G,
15714_C|T, 15746_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24038_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25521_C|G,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28723_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/DC-CDC-2-8448731/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.33 + XEC.2 | BC BR: 15-16 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-12,18-146 | Gap history (edge excluded): 12-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.76e-06 | |
| Rec. model vs L1: 5.15e-09 | Rec. model vs L2: 5.20e-19 | |
| Flags: Model_1BP_Best | | |
XEC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.33 |
169 |
12 |
13.225069 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.17 |
13 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| XEC.25 |
13 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| XEC.24 |
11 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| XEC.8.1 |
12 |
11 |
11.469367 |
-15.007853 |
60.015706 |
0.000007 |
|
* |
|
| XEC.22 |
23 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| XEC.4.3 |
10 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| XEC.18.3 |
13 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| XEC.16 |
23 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| XEC.32 |
42 |
11 |
11.469367 |
-14.920842 |
59.841683 |
0.000008 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
18 |
245.978085 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
16 |
242.468094 |
238.091834 |
-190.183667 |
2.253727e-01 |
* |
|
|
| XEC.9 |
305 |
18 |
235.063472 |
222.583600 |
-159.167199 |
4.160689e-08 |
|
* |
|
| XEC.33 |
169 |
29 |
229.910330 |
221.143900 |
-156.287799 |
9.857828e-09 |
|
|
|
| XEK.1.2 |
33 |
20 |
218.719356 |
198.546170 |
-111.092339 |
1.509128e-18 |
|
|
|
| XEC.8 |
592 |
18 |
215.457227 |
209.058479 |
-132.116959 |
5.563299e-14 |
|
* |
|
| XEC.4.6.1 |
13 |
16 |
212.670454 |
206.015604 |
-126.031208 |
2.647925e-15 |
|
|
|
| XEC.31 |
66 |
18 |
212.585065 |
206.188008 |
-126.376017 |
3.154331e-15 |
|
* |
|
| XEC.28 |
39 |
18 |
212.119082 |
205.722025 |
-125.444049 |
1.971464e-15 |
|
* |
|
| XEC.29 |
135 |
18 |
212.078102 |
197.117967 |
-108.235935 |
3.629579e-19 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1879_A|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4543_C|T, 5164_G|T, 6040_C|T, 6183_A|G, 7842_A|G, 7844_C|T, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11173_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16393_C|T, 17410_C|T, 18163_A|G, 18401_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25799_A|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27630_C|T, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29101_A|G, 29510_A|C
Case 72 (XEC): USA/DE-CDC-LC1136200/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.32 + LZ.5 | BC BR: 140-141 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-140,141-143 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.36e-09 | Rec. model vs L2: 1.63e-101 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
140 |
256.256839 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
143 |
248.731067 |
245.653078 |
-191.306156 |
2.491601e-05 |
* |
|
|
| XEC.19 |
59 |
140 |
247.191129 |
247.191129 |
-194.382257 |
1.156433e-04 |
* |
* |
|
| XEC.39 |
155 |
140 |
246.656679 |
246.656679 |
-193.313357 |
6.772874e-05 |
* |
* |
|
| XEC.8 |
592 |
143 |
244.989738 |
241.025281 |
-182.050563 |
2.430497e-07 |
|
|
|
| XEC.9 |
305 |
143 |
240.935604 |
234.766363 |
-169.532725 |
4.645277e-10 |
|
|
|
| XEC.11 |
16 |
140 |
240.829204 |
240.829204 |
-181.658409 |
1.999897e-07 |
|
* |
|
| XEC.36 |
30 |
140 |
240.613602 |
240.613602 |
-181.227203 |
1.613000e-07 |
|
* |
|
| XEC.17 |
13 |
140 |
239.424370 |
239.424370 |
-178.848739 |
4.907088e-08 |
|
* |
|
| XEC.24 |
11 |
127 |
239.053640 |
235.194571 |
-170.389142 |
7.140986e-10 |
|
|
|
| |||||
LZ.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LZ.5 |
14 |
141 |
8.697959 |
NaN |
NaN |
NaN |
* |
* |
* |
| BQ.1.33 |
11 |
141 |
7.293213 |
7.293213 |
-8.586427 |
0.245367 |
* |
* |
|
| XBB.1.4 |
50 |
141 |
7.104036 |
7.104036 |
-8.208073 |
0.202909 |
* |
* |
|
| HN.3 |
27 |
141 |
6.644733 |
6.644733 |
-7.289465 |
0.128093 |
* |
* |
|
| XEC.27 |
25 |
141 |
6.526721 |
6.526721 |
-7.053442 |
0.113608 |
* |
* |
|
| JN.1.7.7 |
13 |
141 |
6.448280 |
6.448280 |
-6.896559 |
0.105399 |
* |
* |
|
| XBB.1.5.89 |
23 |
141 |
6.348644 |
6.348644 |
-6.697287 |
0.095369 |
* |
* |
|
| BF.5.4 |
14 |
141 |
6.213052 |
6.213052 |
-6.426105 |
0.083326 |
* |
* |
|
| XEC.9 |
305 |
141 |
6.169241 |
6.169241 |
-6.338482 |
0.079659 |
* |
* |
|
| HN.7 |
28 |
141 |
6.066449 |
6.066449 |
-6.132898 |
0.071719 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4475_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 10978_A|G, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G,
18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22367_T|C, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25099_T|C, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27549_C|T, 27807_C|T, 27810_T|C, 28093_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29420_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/DE-USAFSAM-S23724/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: XEC.32 + LZ.5 | BC BR: 138-139 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-138,139-141 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 8.32e-09 | Rec. model vs L2: 9.36e-101 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
138 |
258.687290 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
141 |
255.114028 |
252.036038 |
-206.072077 |
1.294022e-03 |
* |
|
|
| XEC.19 |
59 |
138 |
253.833234 |
253.833234 |
-209.666467 |
7.828378e-03 |
* |
* |
|
| XEC.8 |
592 |
141 |
251.478482 |
247.514026 |
-197.028051 |
1.409064e-05 |
* |
|
|
| XEC.39 |
155 |
138 |
249.274098 |
249.274098 |
-200.548196 |
8.190095e-05 |
* |
* |
|
| XEC.9 |
305 |
141 |
247.346353 |
241.177111 |
-184.354223 |
2.486014e-08 |
|
|
|
| XEC.14 |
193 |
141 |
243.834503 |
239.020505 |
-180.041010 |
2.881370e-09 |
|
|
|
| XEC.11 |
16 |
138 |
243.526719 |
243.526719 |
-189.053437 |
2.606728e-07 |
|
* |
|
| XEC.36 |
30 |
138 |
243.100395 |
243.100395 |
-188.200790 |
1.704200e-07 |
|
* |
|
| XEC.4 |
192 |
138 |
242.050643 |
242.050643 |
-186.101287 |
5.963638e-08 |
|
* |
|
| |||||
LZ.5 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LZ.5 |
14 |
139 |
8.697959 |
NaN |
NaN |
NaN |
* |
* |
* |
| BQ.1.33 |
11 |
139 |
7.293213 |
7.293213 |
-8.586427 |
0.245367 |
* |
* |
|
| XBB.1.4 |
50 |
139 |
7.104036 |
7.104036 |
-8.208073 |
0.202909 |
* |
* |
|
| HN.3 |
27 |
139 |
6.644733 |
6.644733 |
-7.289465 |
0.128093 |
* |
* |
|
| XEC.27 |
25 |
139 |
6.526721 |
6.526721 |
-7.053442 |
0.113608 |
* |
* |
|
| JN.1.7.7 |
13 |
139 |
6.448280 |
6.448280 |
-6.896559 |
0.105399 |
* |
* |
|
| XBB.1.5.89 |
23 |
139 |
6.348644 |
6.348644 |
-6.697287 |
0.095369 |
* |
* |
|
| BF.5.4 |
14 |
139 |
6.213052 |
6.213052 |
-6.426105 |
0.083326 |
* |
* |
|
| XEC.9 |
305 |
139 |
6.169241 |
6.169241 |
-6.338482 |
0.079659 |
* |
* |
|
| HN.7 |
28 |
139 |
6.066449 |
6.066449 |
-6.132898 |
0.071719 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4475_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 10978_A|G, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G,
18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994,
22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22367_T|C, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27549_C|T, 27807_C|T, 27810_T|C, 28093_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29420_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/FL-CDC-LC1136791/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: KP.3.1.1 + XEC.25 | BC BR: 29-30 | BC BR coord: 10520 - 10521 |
| Direction L1: << | Initial region span: 1-15,30-146 | Gap history (edge excluded): 15-30 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.96e-74 | Rec. model vs L2: 2.08e-18 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
15 |
13.768491 |
NaN |
NaN |
NaN |
* |
* |
* |
| BF.11 |
2573 |
4 |
8.632640 |
-98.631561 |
281.263121 |
8.444995e-42 |
|
|
|
| XEC.29 |
135 |
9 |
7.073173 |
-30.572888 |
145.145776 |
3.037458e-12 |
|
|
|
| BF.11.2 |
418 |
3 |
6.710957 |
-154.574374 |
393.148748 |
4.265742e-66 |
|
|
|
| BF.11.1 |
311 |
3 |
6.709306 |
-136.718397 |
357.436794 |
2.422828e-58 |
|
|
|
| BF.11.5 |
122 |
3 |
6.707517 |
-164.682541 |
413.365082 |
1.734912e-70 |
|
|
|
| BF.11.4 |
202 |
3 |
6.700834 |
-142.814352 |
369.628704 |
5.461321e-61 |
|
|
|
| NY.16 |
136 |
5 |
6.305066 |
-56.928874 |
197.857749 |
1.088126e-23 |
|
|
|
| KP.3.3.1 |
211 |
5 |
6.159968 |
-25.195072 |
134.390145 |
6.591961e-10 |
|
|
|
| JN.1.9 |
576 |
5 |
5.965395 |
-34.571607 |
153.143213 |
5.591185e-14 |
|
|
|
| |||||
XEC.25 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.25 |
13 |
30 |
258.133541 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
30 |
257.929424 |
257.929424 |
-275.858849 |
8.146473e-01 |
* |
* |
|
| XEC.9 |
305 |
30 |
255.586242 |
255.586242 |
-271.172484 |
7.808167e-02 |
* |
* |
|
| XEC.2 |
921 |
30 |
254.855862 |
254.855862 |
-269.711724 |
3.762826e-02 |
* |
* |
|
| XEC.40 |
52 |
30 |
250.218231 |
250.218231 |
-260.436463 |
3.652239e-04 |
* |
* |
|
| XEC.31 |
66 |
17 |
245.529196 |
243.254953 |
-246.509905 |
3.449039e-07 |
|
|
|
| KP.3.3 |
1715 |
30 |
245.265231 |
245.265231 |
-250.530462 |
2.574127e-06 |
|
* |
|
| XEK.1 |
88 |
30 |
243.126897 |
243.126897 |
-246.253794 |
3.028585e-07 |
|
* |
|
| XEC.2.1 |
265 |
30 |
242.933619 |
242.933619 |
-245.867237 |
2.504516e-07 |
|
* |
|
| XEC.29 |
135 |
30 |
242.822062 |
242.822062 |
-245.644123 |
2.232441e-07 |
|
* |
|
|
Target sequence
, 140_C|T, 241_C|T, 670_T|G, 835_C|T, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3448_C|T, 3565_T|C, 4184_G|A, 4321_C|T, 5826_C|T, 6183_A|G, 6607_T|C, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 9556_T|C, 10029_C|T, 10198_C|T, 10416_C|T, 10447_G|A, 10449_C|A, 10519_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19497_T|C, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 21998_C|T, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/IL-RIPHL_124021_G/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.2.2 + XEC.2 | BC BR: 5-6 | BC BR coord: 1713 - 1714 |
| Direction L1: << | Initial region span: 1-5,7-145 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.09e-87 | Rec. model vs L2: 1.05e-11 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.2 |
1334 |
5 |
9.029481 |
NaN |
NaN |
NaN |
* |
* |
* |
| KW.1.1 |
127 |
4 |
7.613024 |
-2.386976 |
16.773953 |
1.102881e-05 |
* |
* |
|
| MC.43 |
131 |
4 |
7.599120 |
-2.400880 |
16.801761 |
1.086461e-05 |
* |
* |
|
| CL.1 |
688 |
3 |
7.215446 |
-12.784554 |
37.569109 |
3.356339e-10 |
|
|
|
| JN.1.1 |
3081 |
4 |
7.081387 |
-2.918613 |
17.837226 |
6.459233e-06 |
|
* |
|
| KP.3.3 |
1715 |
4 |
6.628465 |
-3.371535 |
18.743070 |
4.118589e-06 |
|
* |
|
| JN.1.19 |
438 |
4 |
6.390614 |
-10.400399 |
32.800797 |
3.644670e-09 |
|
* |
|
| MC.16 |
917 |
4 |
6.354086 |
-3.645914 |
19.291828 |
3.128365e-06 |
|
* |
|
| MC.1 |
932 |
4 |
6.314172 |
-3.685828 |
19.371655 |
3.005700e-06 |
|
* |
|
| KP.2.3 |
4440 |
4 |
6.021946 |
-3.978054 |
19.956108 |
2.237839e-06 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
7 |
249.082219 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.39 |
155 |
6 |
234.435789 |
234.435789 |
-170.871578 |
9.609530e-03 |
* |
* |
|
| XEC.14 |
193 |
6 |
228.083666 |
228.083666 |
-158.167331 |
1.678542e-05 |
* |
* |
|
| XEC.17 |
13 |
6 |
227.101708 |
227.101708 |
-156.203415 |
6.268334e-06 |
|
* |
|
| XEC.15 |
127 |
6 |
224.274571 |
224.274571 |
-150.549141 |
3.717665e-07 |
|
* |
|
| XEC.32 |
42 |
6 |
223.858612 |
223.858612 |
-149.717224 |
2.454924e-07 |
|
* |
|
| MC.24.1 |
25 |
6 |
223.494994 |
223.494994 |
-148.989989 |
1.704200e-07 |
|
* |
|
| XEC.4 |
192 |
6 |
223.133422 |
223.133422 |
-148.266844 |
1.188980e-07 |
|
* |
|
| XEC.38 |
34 |
6 |
223.036607 |
223.036607 |
-148.073214 |
1.075833e-07 |
|
* |
|
| XEC.24 |
11 |
6 |
222.871909 |
222.871909 |
-147.743818 |
9.121924e-08 |
|
* |
|
|
Target sequence
, 241_C|T, 443_G|A, 670_T|G, 897_C|A, 1711_T|C, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4927_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 8412_A|G, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11137_T|A, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13665_C|T, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21411_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25453_A|C, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759, 29785_T|C
Case 72 (XEC): USA/IL-RIPHL_124096_G/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: KP.2.3.7 + XEC.14 | BC BR: 6-7 | BC BR coord: 1651 - 1652 |
| Direction L1: << | Initial region span: 1-6,11-147 | Gap history (edge excluded): 6-11 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.03e-01 | |
| Rec. model vs L1: 1.73e-154 | Rec. model vs L2: 5.05e-17 | |
| Flags: Model_1BP_Best | | |
KP.2.3.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.7 |
54 |
6 |
16.853608 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.11.1 |
166 |
9 |
14.746054 |
7.378559 |
-0.757117 |
7.674671e-05 |
* |
|
|
| JN.1.53 |
62 |
6 |
14.228038 |
14.228038 |
-14.456075 |
7.243976e-02 |
* |
* |
|
| KP.5 |
77 |
6 |
13.906467 |
13.906467 |
-13.812933 |
5.233971e-02 |
* |
* |
|
| KP.3.3.3 |
288 |
6 |
12.833681 |
12.833681 |
-11.667362 |
1.795296e-02 |
* |
* |
|
| LA.1 |
149 |
6 |
12.440820 |
12.440820 |
-10.881641 |
1.209455e-02 |
* |
* |
|
| LF.7.9.3 |
20 |
5 |
11.825673 |
1.825673 |
10.348653 |
2.968615e-07 |
|
* |
|
| XFB.3 |
56 |
5 |
11.670112 |
1.670112 |
10.659776 |
2.542367e-07 |
|
* |
|
| XEL.5 |
19 |
5 |
11.593891 |
1.593891 |
10.812218 |
2.358665e-07 |
|
* |
|
| LC.1 |
10 |
5 |
11.297148 |
1.297148 |
11.405704 |
1.747342e-07 |
|
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
11 |
234.385154 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
11 |
229.858678 |
222.667042 |
-127.334083 |
1.127881e-04 |
* |
* |
|
| XEC.17 |
13 |
11 |
219.734212 |
217.101708 |
-116.203415 |
4.319310e-07 |
|
* |
|
| XEC.21 |
38 |
11 |
219.337069 |
208.969159 |
-99.938317 |
1.272331e-10 |
|
* |
|
| XEC.31 |
66 |
41 |
219.196756 |
211.092222 |
-104.184444 |
1.059997e-09 |
|
|
|
| XEC.40 |
52 |
41 |
219.182933 |
205.054631 |
-92.109262 |
2.537099e-12 |
|
|
|
| XEK.1 |
88 |
41 |
219.068700 |
167.385281 |
-16.770562 |
1.107807e-28 |
|
|
|
| XEC.2.1 |
265 |
41 |
218.882998 |
184.871171 |
-51.742343 |
4.346135e-21 |
|
|
|
| XEC.25 |
13 |
41 |
218.792918 |
212.084697 |
-106.169394 |
2.866999e-09 |
|
|
|
| XEC.29 |
135 |
41 |
218.771300 |
204.570922 |
-91.141843 |
1.562084e-12 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1651_T|C, 2060_G|A, 2790_C|T, 3037_C|T, 3379_A|G, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9220_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12669_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12965_T|C, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17172_C|A, 17343_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
25603_C|A, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29109_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/IL-RIPHL_124110_G/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.2.3.7 + XEC.14 | BC BR: 4-5 | BC BR coord: 1651 - 1652 |
| Direction L1: << | Initial region span: 1-4,9-145 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.73e-154 | Rec. model vs L2: 3.47e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.3.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.7 |
54 |
4 |
13.173619 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.11.1 |
166 |
7 |
11.010599 |
3.643104 |
2.713793 |
0.000073 |
* |
|
|
| JN.1.53 |
62 |
4 |
10.131202 |
10.131202 |
-10.262404 |
0.047596 |
* |
* |
|
| KP.5 |
77 |
4 |
9.783441 |
9.783441 |
-9.566882 |
0.033709 |
* |
* |
|
| LA.1 |
149 |
4 |
9.250311 |
9.250311 |
-8.500622 |
0.019742 |
* |
* |
|
| KP.3.3.3 |
288 |
4 |
8.580112 |
8.580112 |
-7.160223 |
0.010102 |
* |
* |
|
| JN.1.9 |
576 |
4 |
7.897534 |
7.897534 |
-5.795069 |
0.005118 |
* |
* |
|
| KP.2.3 |
4440 |
4 |
7.454984 |
7.454984 |
-4.909967 |
0.003280 |
* |
* |
|
| LP.8.1.1 |
2345 |
4 |
6.469249 |
6.469249 |
-2.938498 |
0.001225 |
* |
* |
|
| JN.1.1 |
3081 |
4 |
6.211840 |
6.211840 |
-2.423679 |
0.000944 |
* |
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
9 |
234.385154 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
9 |
229.858678 |
222.667042 |
-127.334083 |
1.127881e-04 |
* |
* |
|
| XEC.17 |
13 |
9 |
219.734212 |
217.101708 |
-116.203415 |
4.319310e-07 |
|
* |
|
| XEC.21 |
38 |
9 |
219.337069 |
208.969159 |
-99.938317 |
1.272331e-10 |
|
* |
|
| XEC.31 |
66 |
39 |
219.196756 |
211.092222 |
-104.184444 |
1.059997e-09 |
|
|
|
| XEC.40 |
52 |
39 |
219.182933 |
205.054631 |
-92.109262 |
2.537099e-12 |
|
|
|
| XEK.1 |
88 |
39 |
219.068700 |
167.385281 |
-16.770562 |
1.107807e-28 |
|
|
|
| XEC.2.1 |
265 |
39 |
218.882998 |
184.871171 |
-51.742343 |
4.346135e-21 |
|
|
|
| XEC.25 |
13 |
39 |
218.792918 |
212.084697 |
-106.169394 |
2.866999e-09 |
|
|
|
| XEC.29 |
135 |
39 |
218.771300 |
204.570922 |
-91.141843 |
1.562084e-12 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1651_T|C, 2060_G|A, 2790_C|T, 3037_C|T, 3379_A|G, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9220_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12669_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12965_T|C, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17172_C|A, 17343_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25603_C|A, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29109_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/IL-RIPHL_124115_G/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: JN.1.61 + XEC.2 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,7-144 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.80e-100 | Rec. model vs L2: 7.00e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.61 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.61 |
13 |
4 |
12.830988 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.31 |
204 |
4 |
11.399343 |
11.399343 |
-12.798685 |
2.393089e-01 |
* |
* |
|
| MC.3 |
68 |
4 |
11.146800 |
11.146800 |
-12.293599 |
1.854444e-01 |
* |
* |
|
| BF.10.1 |
37 |
3 |
8.157665 |
-1.842335 |
13.684670 |
4.255004e-07 |
|
* |
|
| BA.5 |
6418 |
3 |
5.390395 |
-4.609605 |
19.219209 |
2.666271e-08 |
|
* |
|
| BA.4.6 |
19369 |
3 |
3.683843 |
-10.215003 |
30.430006 |
9.810331e-11 |
|
* |
|
| BA.5.1.22 |
4997 |
3 |
3.240544 |
-6.759456 |
23.518912 |
3.105783e-09 |
|
* |
|
| XEC.25 |
13 |
5 |
1.005220 |
-5.281181 |
20.562362 |
1.364354e-08 |
|
* |
|
| XEC.24 |
11 |
5 |
1.005220 |
-5.281181 |
20.562362 |
1.364354e-08 |
|
* |
|
| XEC.29 |
135 |
5 |
1.005220 |
-5.281181 |
20.562362 |
1.364354e-08 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
7 |
254.773388 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.39 |
155 |
3 |
240.652038 |
235.950730 |
-171.901459 |
3.238143 |
* |
|
|
| XEC.25 |
13 |
3 |
240.255109 |
235.540855 |
-171.081710 |
2.148994 |
* |
|
|
| XEC.18 |
165 |
3 |
239.990716 |
235.288621 |
-170.577242 |
1.673639 |
* |
|
|
| XEC.33 |
169 |
3 |
237.817906 |
233.133541 |
-166.267082 |
0.193980 |
* |
|
|
| XEC.8 |
592 |
3 |
236.165715 |
231.520273 |
-163.040547 |
0.038581 |
* |
|
|
| XEC.17 |
13 |
3 |
231.815961 |
227.101708 |
-154.203415 |
0.000464 |
* |
|
|
| XEC.14 |
193 |
7 |
231.797265 |
228.083666 |
-156.167331 |
0.001243 |
* |
* |
|
| XEC.15 |
127 |
3 |
230.743005 |
226.044625 |
-152.089250 |
0.000162 |
* |
|
|
| XEC.31 |
66 |
15 |
228.670168 |
221.092222 |
-142.184444 |
0.000001 |
|
|
|
|
Target sequence
, 241_C|T, 347_G|T, 670_T|G, 897_C|A, 2060_G|A, 2069_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6543_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18075_T|C,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25669_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27795_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28352_A|G, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29358_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/IL-USAFSAM-S23723/2025
| Target: 5350 samples | Number of changes: 142 | |
| BC: XEC.4 + JN.1.39 + XEC.4 | BC BR: 11-12, 16-17 | BC BR coord: 4330 - 4331, 8292 - 8293 |
| Direction L1: << | Initial region span: 1-11,13-16,17-142 | Gap history (edge excluded): 11-17 -> 11-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 9.45e-06 | |
| Rec. model vs L1: 1.98e-12 | Rec. model vs L2: 2.29e-86 | |
| Flags: Model_2BP_Best | | |
XEC.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
11 |
11.411059 |
None |
None |
None |
* |
* |
* |
| |||||
JN.1.39 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.39 |
1007 |
13 |
9.471030 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
13 |
8.094207 |
-1.905793 |
21.811586 |
2.528396e-01 |
* |
* |
|
| KS.1.1.2 |
252 |
15 |
8.088122 |
-14.898127 |
47.796254 |
5.743654e-07 |
|
|
|
| MC.1 |
932 |
14 |
7.121538 |
-3.654406 |
25.308813 |
4.393693e-02 |
* |
* |
|
| MC.1.3 |
51 |
15 |
7.120776 |
-13.656244 |
45.312488 |
1.994734e-06 |
|
|
|
| NL.12 |
51 |
15 |
7.120776 |
-9.269433 |
36.538866 |
1.600539e-04 |
* |
|
|
| JN.1.7.4 |
101 |
15 |
7.120678 |
-9.269531 |
36.539062 |
1.600539e-04 |
* |
|
|
| JN.1.38.1 |
107 |
15 |
7.072920 |
-9.326679 |
36.653357 |
1.514886e-04 |
* |
|
|
| LP.8.1.5 |
168 |
15 |
7.027250 |
-25.461006 |
68.922012 |
1.489493e-11 |
|
|
|
| JN.1 |
17255 |
13 |
6.967998 |
6.095705 |
5.808589 |
7.537042e+02 |
* |
* |
|
| |||||
XEC.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
17 |
261.385774 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.6 |
45 |
2 |
259.683711 |
259.423336 |
-226.846671 |
1.561287e-06 |
|
|
|
| XEC.31 |
66 |
17 |
249.414537 |
260.838102 |
-229.676204 |
6.427017e-06 |
|
* |
|
| XEC.15 |
127 |
2 |
247.771080 |
248.556135 |
-205.112270 |
2.969626e-11 |
|
|
|
| XEC.24 |
11 |
17 |
247.354286 |
258.823653 |
-225.647306 |
8.568525e-07 |
|
* |
|
| XEC.29 |
135 |
15 |
247.155609 |
252.455289 |
-212.910577 |
1.467068e-09 |
|
|
|
| XEC.2.2 |
273 |
21 |
245.924553 |
240.926408 |
-189.852816 |
1.442231e-14 |
|
|
|
| XEC.2 |
921 |
6 |
243.179137 |
235.579887 |
-179.159775 |
6.882257e-17 |
|
|
|
| XEC.8 |
592 |
17 |
242.121633 |
253.469042 |
-214.938084 |
4.048174e-09 |
|
* |
|
| XEC.2.1 |
265 |
17 |
241.983075 |
237.093317 |
-182.186633 |
3.131028e-16 |
|
* |
|
|
Target sequence
, 54_T|A, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4930_T|C, 6183_A|G, 7165_C|T, 7842_A|G, 8247_C|T, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21578_G|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21844_C|T,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25452_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C,
28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/IVY-G25Y94R9/2025
| Target: 5350 samples | Number of changes: 142 | |
| BC: XEC.2 + XEC.18 + XEC.2 | BC BR: 3-4, 15-16 | BC BR coord: 896 - 897, 7841 - 7842 |
| Direction L1: << | Initial region span: 1-3,5-15,16-142 | Gap history (edge excluded): 3-16 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.32e-02 | |
| Rec. model vs L1: 1.29e-30 | Rec. model vs L2: 3.16e-20 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
3 |
4.681558 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.18 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
5 |
14.256531 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9.3 |
20 |
14 |
9.958902 |
-25.945726 |
87.891452 |
7.661374e-14 |
|
|
|
| XEC.24 |
11 |
5 |
8.798033 |
-1.201967 |
38.403935 |
4.274877e-03 |
* |
* |
|
| LF.7.3.5 |
16 |
14 |
7.173478 |
-28.508007 |
93.016013 |
5.893066e-15 |
|
|
|
| LF.7.9 |
20 |
14 |
6.963170 |
-28.823675 |
93.647351 |
4.300694e-15 |
|
|
|
| PC.3.1 |
27 |
14 |
6.663065 |
-37.730533 |
111.461066 |
5.836415e-19 |
|
|
|
| JN.1.41 |
121 |
14 |
6.549406 |
-11.185720 |
58.371441 |
1.970122e-07 |
|
|
|
| XBB.1.5.97 |
39 |
15 |
6.349111 |
-60.422937 |
156.845874 |
8.125178e-29 |
|
|
|
| B.1.474 |
13 |
15 |
6.349111 |
-106.473793 |
248.947586 |
8.139018e-49 |
|
|
|
| GN.1.4 |
13 |
15 |
6.349111 |
-69.934752 |
175.869503 |
6.021329e-33 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
279.381372 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
5 |
266.714506 |
257.164636 |
-248.329272 |
2.077201e-12 |
|
|
|
| XEC.24 |
11 |
5 |
261.309602 |
257.230389 |
-248.460778 |
2.216703e-12 |
|
|
|
| XEC.31 |
66 |
16 |
258.670168 |
263.358453 |
-260.716905 |
1.018434e-09 |
|
* |
|
| XEC.29 |
135 |
16 |
258.229842 |
262.948662 |
-259.897323 |
6.758838e-10 |
|
* |
|
| XEC.9 |
305 |
16 |
258.101204 |
262.783680 |
-259.567361 |
5.730776e-10 |
|
* |
|
| XEC.28 |
39 |
16 |
258.027638 |
262.667838 |
-259.335677 |
5.108220e-10 |
|
* |
|
| XEC.19 |
59 |
16 |
257.776717 |
262.443350 |
-258.886701 |
4.078996e-10 |
|
* |
|
| XEC.14 |
193 |
16 |
257.738993 |
262.431674 |
-258.863348 |
4.018268e-10 |
|
* |
|
| XEC.17 |
13 |
16 |
256.741368 |
261.460188 |
-256.920375 |
1.523257e-10 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1218_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3482_G|A, 3565_T|C, 4184_G|A, 4321_C|T, 5926_T|C, 6183_A|G, 7834_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22927_G|T, 22928_T|C, 22942_T|A,
22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25435_T|C, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/IVY-G25Y98H5/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.15 + XEC.2 | BC BR: 5-6 | BC BR coord: 2060 - 2061 |
| Direction L1: << | Initial region span: 1-5,7-143 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.97e-19 | Rec. model vs L2: 7.14e-16 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.15 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.15 |
127 |
5 |
12.808072 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.30 |
135 |
5 |
12.017272 |
12.017272 |
-12.034545 |
4.515812e-01 |
* |
* |
|
| XEC.39 |
155 |
5 |
11.912143 |
11.912143 |
-11.824285 |
4.065697e-01 |
* |
* |
|
| NM.2 |
28 |
4 |
10.652217 |
0.652217 |
10.695567 |
5.235752e-06 |
|
* |
|
| LP.7 |
57 |
4 |
10.477981 |
0.477981 |
11.044038 |
4.417220e-06 |
|
* |
|
| KP.2.24 |
44 |
4 |
9.583943 |
-0.416057 |
12.832113 |
1.804910e-06 |
|
* |
|
| MC.14 |
35 |
4 |
9.377846 |
-0.622154 |
13.244308 |
1.470365e-06 |
|
* |
|
| KP.2.3.13 |
25 |
4 |
8.568321 |
-1.431679 |
14.863359 |
6.541037e-07 |
|
* |
|
| JN.1.1.6 |
13 |
4 |
8.123635 |
-9.120888 |
30.241775 |
2.991727e-10 |
|
* |
|
| KP.3.4 |
62 |
4 |
7.931484 |
-2.068516 |
16.137033 |
3.449039e-07 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
7 |
268.083499 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
2 |
259.645691 |
248.721177 |
-203.442354 |
8.567067e-05 |
* |
|
|
| XEC.36 |
30 |
2 |
250.053785 |
239.048565 |
-184.097130 |
5.410091e-09 |
|
|
|
| XEC.17 |
13 |
2 |
241.820527 |
230.815307 |
-167.630613 |
1.434794e-12 |
|
|
|
| XEC.14 |
193 |
7 |
241.797265 |
231.797265 |
-169.594529 |
3.822945e-12 |
|
* |
|
| XEC.2.2 |
273 |
15 |
240.070471 |
226.209990 |
-158.419980 |
1.435038e-14 |
|
|
|
| XEC.31 |
66 |
15 |
238.670168 |
224.805821 |
-155.611642 |
3.521110e-15 |
|
|
|
| XEC.32 |
42 |
2 |
238.577431 |
227.572211 |
-161.144422 |
5.591185e-14 |
|
|
|
| XEC.29 |
135 |
15 |
238.229842 |
218.284521 |
-142.569041 |
5.188952e-18 |
|
|
|
| MC.24.1 |
25 |
2 |
238.172992 |
227.862520 |
-161.725039 |
7.509668e-14 |
|
|
|
|
Target sequence
, 106_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2433_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6500_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16443_C|T, 17410_C|T,
18163_A|G, 18492_A|G, 18632_T|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22388_C|T, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22639_C|A, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/IVY-G25Z06J6/2025
| Target: 5350 samples | Number of changes: 151 | |
| BC: XEC.33 + XEC.2 | BC BR: 13-14 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-13,33-151 | Gap history (edge excluded): 13-33 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 6.60e-01 | |
| Rec. model vs L1: 8.07e-34 | Rec. model vs L2: 3.96e-24 | |
| Flags: Model_1BP_Best | | |
XEC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.33 |
169 |
13 |
17.494146 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
13 |
14.119344 |
14.119344 |
3.761311 |
3.421812e-02 |
* |
* |
|
| XEC.4.1.1 |
12 |
4 |
11.005220 |
-3.039664 |
38.079328 |
1.207154e-09 |
|
|
|
| XEC.25 |
13 |
4 |
11.005220 |
5.079158 |
21.841683 |
4.057271e-06 |
|
|
|
| XEC.4.1.4 |
23 |
4 |
11.005220 |
0.008634 |
31.982731 |
2.548948e-08 |
|
|
|
| XEC.36 |
30 |
4 |
11.005220 |
5.045257 |
21.909486 |
3.917723e-06 |
|
|
|
| XEC.32 |
42 |
4 |
11.005220 |
5.079158 |
21.841683 |
4.057271e-06 |
|
|
|
| XEC.3 |
29 |
4 |
11.005220 |
5.044067 |
21.911866 |
3.917723e-06 |
|
|
|
| XEC.29 |
135 |
4 |
11.005220 |
-0.377024 |
32.754048 |
1.734433e-08 |
|
|
|
| XEC.27 |
25 |
4 |
11.005220 |
4.995777 |
22.008446 |
3.726653e-06 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
33 |
231.429180 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.39 |
155 |
46 |
225.103290 |
155.636125 |
-19.272251 |
3.062670e-21 |
|
|
|
| XEC.31 |
66 |
46 |
218.124388 |
148.670168 |
-5.340337 |
2.892272e-24 |
|
|
|
| XEC.40 |
52 |
46 |
218.110565 |
142.331001 |
7.337998 |
5.102841e-27 |
|
|
|
| XEK.1 |
88 |
46 |
217.996332 |
149.523285 |
-7.046571 |
6.800813e-24 |
|
|
|
| XEC.2.1 |
265 |
46 |
217.810630 |
138.650357 |
14.699285 |
1.287088e-28 |
|
|
|
| XEC.25 |
13 |
46 |
217.720550 |
141.724358 |
8.551285 |
2.786531e-27 |
|
|
|
| XEC.29 |
135 |
46 |
217.698932 |
149.602211 |
-7.204421 |
7.330489e-24 |
|
|
|
| XEK.5 |
28 |
46 |
217.603736 |
137.364286 |
17.271427 |
3.560738e-29 |
|
|
|
| XEC.33 |
169 |
46 |
217.580545 |
140.350438 |
11.299124 |
7.045454e-28 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2069_A|G, 2790_C|T, 2847_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7125_C|A, 7842_A|G, 8293_C|T, 8393_G|A, 8991_C|T, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10663_T|C, 11042_G|T, 11139_C|T, 11288_11296, 11727_G|A, 12213_C|T, 12427_T|C, 12781_C|T, 12789_C|T, 12815_C|T, 12880_C|T,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 15763_C|T, 17274_C|T, 17410_C|T, 18060_C|T, 18086_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G,
21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T,
22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T,
24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25669_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27795_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/LA-CDC-2-8448566/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.9 + XEC.2 | BC BR: 12-13 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-9,13-146 | Gap history (edge excluded): 9-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.51e-16 | Rec. model vs L2: 7.29e-24 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.9 |
305 |
9 |
20.521588 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
12 |
17.382156 |
17.382156 |
-10.764313 |
111.608811 |
* |
|
|
| XEC.18 |
165 |
12 |
13.785538 |
13.785538 |
-3.571076 |
3.064854 |
* |
|
|
| XEC.15 |
127 |
12 |
12.887384 |
12.887384 |
-1.774768 |
1.246077 |
* |
|
|
| MC.24 |
831 |
9 |
12.803342 |
4.947791 |
14.104418 |
0.000446 |
* |
* |
|
| KP.3.1 |
1957 |
9 |
11.763566 |
3.906842 |
16.186315 |
0.000157 |
* |
* |
|
| KP.3.1.1 |
12013 |
12 |
11.308495 |
11.308495 |
1.383010 |
0.257947 |
* |
|
|
| LF.7.4 |
15 |
4 |
10.108672 |
0.429719 |
23.140563 |
0.000005 |
|
|
|
| XEC.32 |
42 |
9 |
9.322509 |
1.469367 |
21.061265 |
0.000014 |
* |
* |
|
| XEC.16 |
23 |
9 |
9.322509 |
1.469367 |
21.061265 |
0.000014 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
13 |
221.423823 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.15 |
127 |
3 |
218.746493 |
195.863675 |
-105.727350 |
7.932919e-12 |
|
|
|
| XEC.9 |
305 |
40 |
217.415245 |
194.405749 |
-102.811498 |
1.842312e-12 |
|
|
|
| XEC.33 |
169 |
40 |
217.217325 |
192.518706 |
-99.037413 |
2.797164e-13 |
|
|
|
| XEC.2.1 |
265 |
40 |
217.060504 |
190.430079 |
-94.860158 |
3.459733e-14 |
|
|
|
| XEC.2.2 |
273 |
40 |
215.821498 |
203.772860 |
-121.545721 |
2.161237e-08 |
|
|
|
| XEC.13 |
30 |
40 |
213.552422 |
196.566633 |
-107.133266 |
1.597494e-11 |
|
|
|
| XEC.8 |
592 |
37 |
211.038611 |
199.432561 |
-112.865121 |
2.817503e-10 |
|
|
|
| XEC.18 |
165 |
3 |
207.347002 |
183.566030 |
-81.132060 |
3.610862e-17 |
|
|
|
| XEC.31 |
66 |
40 |
206.714596 |
189.797799 |
-93.595599 |
1.842625e-14 |
|
|
|
|
Target sequence
, 241_C|T, 521_523, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3653_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
9803_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11908_A|G, 12529_A|G, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13426_C|T, 14408_C|T, 15538_G|A,
15714_C|T, 15756_T|A, 16293_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21057_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25267_C|T,
25584_C|T, 25658_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): USA/LA-CDC-LC1137035/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: KP.2.5 + XEC.14 | BC BR: 3-4 | BC BR coord: 678 - 679 |
| Direction L1: << | Initial region span: 1-3,5-141 | Gap history (edge excluded): 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.80e-138 | Rec. model vs L2: 1.66e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.5 |
66 |
3 |
9.391444 |
NaN |
NaN |
NaN |
* |
* |
* |
| CM.3 |
22 |
3 |
6.639909 |
6.639909 |
-7.279818 |
0.063928 |
* |
* |
|
| BQ.1.1.7 |
1146 |
4 |
6.349948 |
2.677297 |
0.645407 |
0.001213 |
* |
* |
|
| KP.5 |
77 |
3 |
6.000082 |
6.000082 |
-6.000164 |
0.033709 |
* |
* |
|
| BN.1.2.3 |
117 |
3 |
5.653341 |
5.653341 |
-5.306682 |
0.023873 |
* |
* |
|
| BQ.1.26 |
121 |
3 |
5.611641 |
5.611641 |
-5.223282 |
0.022823 |
* |
* |
|
| BA.5.2.48 |
267 |
3 |
5.234796 |
5.234796 |
-4.469593 |
0.015686 |
* |
* |
|
| BF.7.24 |
444 |
3 |
4.319240 |
4.319240 |
-2.638479 |
0.006282 |
* |
* |
|
| BQ.1.11 |
1938 |
3 |
3.937737 |
3.937737 |
-1.875474 |
0.004296 |
* |
* |
|
| BF.3 |
355 |
3 |
3.844681 |
3.844681 |
-1.689363 |
0.003907 |
* |
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
5 |
265.924099 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEK.1 |
88 |
17 |
263.493156 |
202.362097 |
-96.724194 |
5.457781e-24 |
|
|
|
| XEC.2.2 |
273 |
17 |
261.614127 |
225.577593 |
-143.155185 |
6.627259e-14 |
|
|
|
| XEC.31 |
66 |
17 |
261.301202 |
237.335343 |
-166.670685 |
8.442393e-09 |
|
|
|
| XEC.29 |
135 |
17 |
260.860876 |
230.829310 |
-153.658620 |
1.262932e-11 |
|
|
|
| XEC.9 |
305 |
17 |
260.732237 |
249.719111 |
-191.438222 |
2.019309e-03 |
* |
|
|
| XEC.28 |
39 |
17 |
260.658672 |
237.593207 |
-167.186414 |
1.094919e-08 |
|
|
|
| XEC.19 |
59 |
17 |
260.407751 |
237.555495 |
-167.110989 |
1.051987e-08 |
|
|
|
| XEC.2 |
921 |
17 |
260.352396 |
220.158678 |
-132.317356 |
2.933985e-16 |
|
|
|
| XEC.8 |
592 |
5 |
259.445082 |
249.445082 |
-190.890165 |
1.533811e-03 |
* |
* |
|
|
Target sequence
, 241_C|T, 592_T|C, 670_T|G, 875_C|A, 897_C|A, 2060_G|A, 2644_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6411_A|G, 6912_A|G, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/MA-MASPHL-13857/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.2 + JN.1.4 | BC BR: 134-135 | BC BR coord: 28271 - 28272 |
| Direction L1: >> | Initial region span: 1-134,135-145 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 6.64e-28 | Rec. model vs L2: 1.23e-40 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
134 |
239.094108 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.24.1 |
25 |
140 |
215.448660 |
208.647334 |
-133.294669 |
5.966684e-14 |
|
|
|
| XEC.25 |
13 |
134 |
213.044929 |
213.044929 |
-142.089858 |
4.859916e-12 |
|
* |
|
| XEC.9 |
305 |
134 |
210.992612 |
210.992612 |
-137.985223 |
6.256408e-13 |
|
* |
|
| KP.3.3 |
1715 |
134 |
209.495652 |
209.495652 |
-134.991304 |
1.395993e-13 |
|
* |
|
| KP.2 |
1589 |
140 |
205.753893 |
199.057093 |
-114.114186 |
4.081774e-18 |
|
|
|
| XEC.18 |
165 |
134 |
205.121870 |
205.121870 |
-126.243739 |
1.757296e-15 |
|
* |
|
| XEC.24 |
11 |
134 |
205.084947 |
205.084947 |
-126.169895 |
1.696855e-15 |
|
* |
|
| XEC.36 |
30 |
134 |
205.002307 |
205.002307 |
-126.004613 |
1.558582e-15 |
|
* |
|
| XEC.17 |
13 |
134 |
204.856962 |
204.856962 |
-125.713924 |
1.348208e-15 |
|
* |
|
| |||||
JN.1.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.4 |
8971 |
135 |
8.824759 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.1.6 |
63 |
143 |
7.701175 |
-19.105800 |
66.211599 |
7.415751e-13 |
|
|
|
| KP.3.1.1 |
12013 |
135 |
7.486499 |
7.486499 |
13.027002 |
2.618457e-01 |
* |
* |
|
| GN.1.2 |
14 |
143 |
6.780777 |
-20.100305 |
68.200610 |
2.741777e-13 |
|
|
|
| FL.21.2 |
11 |
143 |
6.569954 |
-24.200491 |
76.400982 |
4.543858e-15 |
|
|
|
| JN.1.4.5 |
1757 |
142 |
6.358146 |
3.108803 |
21.782394 |
3.296151e-03 |
* |
|
|
| CB.1 |
82 |
143 |
6.308325 |
-20.523342 |
69.046684 |
1.792491e-13 |
|
|
|
| BA.2.47 |
679 |
142 |
6.044353 |
-10.777386 |
49.554773 |
3.074880e-09 |
|
|
|
| LZ.1.1 |
18 |
143 |
6.026834 |
-16.469150 |
60.938301 |
1.034001e-11 |
|
|
|
| BU.2 |
67 |
143 |
6.016630 |
-23.834289 |
75.668578 |
6.545491e-15 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 679_C|T, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5822_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11546_A|G, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14514_T|C, 15651_T|C, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21875_A|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22347_C|T, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29212_G|A, 29479_T|C, 29510_A|C, 29670_C|T, 29734_29759
Case 72 (XEC): USA/MA-MASPHL-13878/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.31 + JN.1.1 + XEC.31 | BC BR: 10-11, 38-39 | BC BR coord: 3566 - 3567, 15590 - 15591 |
| Direction L1: << | Initial region span: 1-10,11-30,39-146 | Gap history (edge excluded): 10-39 -> 30-39 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.36e-18 | |
| Rec. model vs L1: 1.20e-27 | Rec. model vs L2: 1.01e-73 | |
| Flags: Model_2BP_Best | | |
XEC.31 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.31 |
66 |
10 |
23.393083 |
None |
None |
None |
* |
* |
* |
| |||||
JN.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.1 |
3081 |
30 |
28.676856 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.13.1 |
751 |
36 |
20.906996 |
0.906996 |
68.186008 |
7.228963e-07 |
|
|
|
| JN.1.8.1 |
1498 |
30 |
19.265047 |
4.667079 |
60.665842 |
3.104726e-05 |
* |
* |
|
| MC.10.1 |
650 |
30 |
18.299583 |
-16.204617 |
102.409234 |
2.681004e-14 |
|
* |
|
| JN.1 |
17255 |
36 |
17.872708 |
17.404804 |
35.190392 |
1.059095e+01 |
* |
|
|
| JN.1.4 |
8971 |
36 |
17.711033 |
9.920049 |
50.159903 |
5.946217e-03 |
* |
|
|
| KP.3.1.1 |
12013 |
34 |
16.845862 |
9.661502 |
50.676995 |
4.584840e-03 |
* |
|
|
| KP.2.2 |
1334 |
36 |
14.772792 |
-5.227208 |
80.454417 |
1.573442e-09 |
|
|
|
| KP.2.3 |
4440 |
36 |
14.513041 |
4.129563 |
61.740875 |
1.818343e-05 |
* |
|
|
| KV.2 |
236 |
15 |
14.209157 |
-19.308873 |
108.617746 |
1.201747e-15 |
|
|
|
| |||||
XEC.31 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.31 |
66 |
39 |
246.096884 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
39 |
245.650945 |
253.813632 |
-267.627264 |
1.557521e-07 |
|
* |
|
| XEC.9 |
305 |
39 |
244.700294 |
268.105049 |
-296.210099 |
2.503238e-01 |
* |
* |
|
| XEC.18 |
165 |
39 |
238.974479 |
262.276532 |
-284.553065 |
7.354706e-04 |
* |
* |
|
| XEC.33 |
169 |
32 |
238.970357 |
256.022860 |
-272.045719 |
1.419792e-06 |
|
|
|
| XEC.39 |
155 |
39 |
238.163561 |
260.707696 |
-281.415392 |
1.537781e-04 |
* |
* |
|
| XEC.40 |
52 |
43 |
238.110565 |
256.875311 |
-273.750623 |
3.321812e-06 |
|
|
|
| XEK.1 |
88 |
43 |
237.996332 |
239.734737 |
-239.469473 |
1.195550e-13 |
|
|
|
| XEC.2.1 |
265 |
43 |
237.810630 |
240.690964 |
-241.381927 |
3.106840e-13 |
|
|
|
| XEC.25 |
13 |
43 |
237.720550 |
254.819385 |
-269.638770 |
4.255004e-07 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6353_T|C, 7842_A|G, 8290_C|T, 8293_C|T, 8393_G|A, 8860_C|T,
9344_C|T, 9424_A|G, 9534_C|T, 9967_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12757_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15042_T|C, 15588_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 17502_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/MA-MASPHL-13989/2025
| Target: 5350 samples | Number of changes: 149 | |
| BC: XEC.19 + KP.2.3 + XEC.19 | BC BR: 9-10, 15-16 | BC BR coord: 3566 - 3567, 6899 - 6900 |
| Direction L1: << | Initial region span: 1-9,10-15,16-149 | Gap history (edge excluded): 9-16 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.96e-14 | |
| Rec. model vs L1: 3.43e-20 | Rec. model vs L2: 8.02e-82 | |
| Flags: Model_2BP_Best | | |
XEC.19 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.19 |
59 |
9 |
19.453239 |
None |
None |
None |
* |
* |
* |
| |||||
KP.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
15 |
8.729715 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.36 |
49 |
12 |
8.538252 |
-7.851957 |
41.703915 |
6.300826e-08 |
|
|
|
| LU.2.1.1 |
49 |
12 |
8.538252 |
-14.304510 |
54.609019 |
9.908927e-11 |
|
|
|
| XBB.1.5.86 |
101 |
12 |
7.814951 |
-22.185049 |
70.370097 |
3.747884e-14 |
|
|
|
| FL.13 |
151 |
12 |
7.399459 |
-35.879717 |
97.759433 |
4.227885e-20 |
|
|
|
| XBB.2.3 |
695 |
11 |
6.202173 |
-35.285736 |
96.571472 |
7.665286e-20 |
|
|
|
| BA.1.21.1 |
65 |
10 |
6.108827 |
-48.037197 |
122.074395 |
2.224712e-25 |
|
|
|
| KP.3.1.1 |
12013 |
14 |
5.992641 |
5.502703 |
14.994593 |
3.975578e-02 |
* |
* |
|
| BA.5.1.2 |
2225 |
12 |
5.408043 |
-17.996531 |
61.993061 |
2.474457e-12 |
|
|
|
| EG.5.1.4 |
1717 |
12 |
4.978238 |
-29.441046 |
84.882091 |
2.648376e-17 |
|
|
|
| |||||
XEC.19 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.19 |
59 |
16 |
215.078272 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.29 |
135 |
16 |
212.613878 |
233.603918 |
-159.207835 |
3.965314e-01 |
* |
* |
|
| XEC.2 |
921 |
14 |
210.878415 |
212.337568 |
-116.675136 |
2.306776e-10 |
|
|
|
| XEC.14 |
193 |
16 |
208.923291 |
229.599654 |
-151.199308 |
7.226503e-03 |
* |
* |
|
| XEC.8 |
592 |
1 |
205.591952 |
219.268660 |
-130.537320 |
2.358665e-07 |
|
|
|
| XEC.40 |
52 |
16 |
205.362088 |
225.966571 |
-143.933143 |
1.906636e-04 |
* |
* |
|
| XEC.39 |
155 |
16 |
203.865924 |
224.225056 |
-140.450111 |
3.346535e-05 |
* |
* |
|
| KP.3.1.1 |
12013 |
1 |
202.976380 |
197.473676 |
-86.947352 |
8.076403e-17 |
|
|
|
| XEC.9 |
305 |
1 |
200.893179 |
213.908285 |
-119.816570 |
1.108786e-09 |
|
|
|
| KP.3.3 |
1715 |
16 |
199.390583 |
211.340453 |
-114.680905 |
8.486155e-11 |
|
* |
|
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3754_A|G, 4184_G|A, 4321_C|T, 5175_C|T, 6183_A|G, 6896_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10456_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13043_G|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19875_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23262_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25234_G|A, 25429_G|T,
25584_C|T, 25703_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27630_C|A, 27807_C|T,
27810_T|C, 28254, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/MI-MDHHS-SC45757/2025
| Target: 5350 samples | Number of changes: 142 | |
| BC: KP.3.1.1 + XEC.19 | BC BR: 14-15 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-14,16-142 | Gap history (edge excluded): 14-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.57e-01 | |
| Rec. model vs L1: 1.86e-73 | Rec. model vs L2: 2.83e-16 | |
| Flags: Model_1BP_Best | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
14 |
14.895823 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
12 |
13.579186 |
7.188977 |
19.622046 |
4.505687e-04 |
* |
|
|
| JN.1.42.1 |
18 |
4 |
10.232834 |
-14.057470 |
62.114939 |
2.674082e-13 |
|
|
|
| JN.1.61 |
13 |
4 |
9.516802 |
-6.489302 |
46.978605 |
5.159558e-10 |
|
|
|
| BA.2.86.2 |
74 |
4 |
8.876299 |
-34.321045 |
102.642090 |
4.228605e-22 |
|
|
|
| KP.3.1 |
1957 |
14 |
8.727667 |
8.727667 |
16.544667 |
2.101718e-03 |
* |
* |
|
| JN.1.67 |
32 |
4 |
8.616016 |
-7.310046 |
48.620093 |
2.272433e-10 |
|
|
|
| JN.1.18.3 |
97 |
4 |
7.507040 |
-8.527824 |
51.055648 |
6.708907e-11 |
|
|
|
| PP.1 |
127 |
4 |
7.172964 |
-21.065694 |
76.131387 |
2.414184e-16 |
|
|
|
| JN.1.7.5 |
427 |
4 |
7.064239 |
1.991836 |
30.016329 |
2.485591e-06 |
|
|
|
| |||||
XEC.19 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.19 |
59 |
16 |
260.283476 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
6 |
255.079262 |
244.761483 |
-221.522966 |
3.985869e-03 |
* |
|
|
| XEC.14.1 |
14 |
6 |
253.984259 |
243.623920 |
-219.247840 |
1.281146e-03 |
* |
|
|
| XEC.31 |
66 |
16 |
247.089186 |
237.089186 |
-206.178373 |
1.859877e-06 |
|
* |
|
| XEC.29 |
135 |
16 |
246.648860 |
228.085783 |
-188.171565 |
2.283823e-10 |
|
* |
|
| XEC.9 |
305 |
16 |
246.520222 |
230.437406 |
-192.874813 |
2.394719e-09 |
|
* |
|
| XEC.14 |
193 |
6 |
246.502684 |
236.158011 |
-204.316021 |
7.338215e-07 |
|
|
|
| XEC.28 |
39 |
16 |
246.446656 |
236.446656 |
-204.893313 |
9.758080e-07 |
|
* |
|
| XEC.2 |
921 |
16 |
246.133855 |
236.133855 |
-204.267710 |
7.157034e-07 |
|
* |
|
| XEC.17 |
13 |
6 |
245.520726 |
235.160386 |
-202.320773 |
2.699579e-07 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1347_C|T, 1549_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4927_C|T, 6183_A|G, 6912_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19170_C|A, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A,
22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27600_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29046_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/MI-UM-10063263439/2025
| Target: 5350 samples | Number of changes: 151 | |
| BC: XEC.8 + XEC.2 | BC BR: 13-14 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-11,16-151 | Gap history (edge excluded): 11-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 5.83e-03 | |
| Rec. model vs L1: 3.82e-31 | Rec. model vs L2: 1.29e-12 | |
| Flags: Model_1BP_Best | | |
XEC.8 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
11 |
26.139423 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
13 |
20.929997 |
20.929997 |
-15.859993 |
3.254374e+00 |
* |
|
|
| XEC.18 |
165 |
14 |
20.707592 |
17.110728 |
-8.221456 |
7.136127e-02 |
* |
|
|
| XEC.33 |
169 |
14 |
20.642463 |
17.045455 |
-8.090910 |
6.687032e-02 |
* |
|
|
| MC.24 |
831 |
13 |
19.806993 |
19.806993 |
-13.613986 |
1.056541e+00 |
* |
|
|
| KP.3.1.1 |
12013 |
13 |
16.574239 |
16.574239 |
-7.148477 |
4.179410e-02 |
* |
|
|
| XEC.9 |
305 |
13 |
16.449763 |
16.449763 |
-6.899526 |
3.688317e-02 |
* |
|
|
| XEC.16 |
23 |
15 |
13.603314 |
5.079158 |
15.841683 |
4.255004e-07 |
|
|
|
| JN.1.8.1 |
1498 |
14 |
11.990692 |
8.388417 |
9.223166 |
1.165238e-05 |
* |
|
|
| JN.1 |
17255 |
14 |
11.476711 |
7.874986 |
10.250028 |
6.962305e-06 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
246.921343 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
1 |
201.070379 |
181.321165 |
-62.642329 |
1.939078e-26 |
|
|
|
| XEC.2.2 |
273 |
13 |
200.028422 |
196.418630 |
-92.837261 |
7.005544e-20 |
|
|
|
| KP.3.1.1 |
12013 |
1 |
195.448802 |
178.874563 |
-57.749127 |
1.681687e-27 |
|
|
|
| XEC.18 |
165 |
5 |
187.838093 |
165.434026 |
-30.868053 |
2.448090e-33 |
|
|
|
| XEC.40 |
52 |
16 |
184.390794 |
177.993737 |
-55.987475 |
6.975351e-28 |
|
* |
|
| KP.3.3 |
1715 |
1 |
179.631975 |
158.701979 |
-17.403957 |
2.909739e-36 |
|
|
|
| JN.1 |
17255 |
6 |
178.389892 |
164.989949 |
-29.979898 |
1.568795e-33 |
|
|
|
| XEC.29 |
135 |
16 |
178.007347 |
163.047212 |
-26.094425 |
2.243177e-34 |
|
* |
|
| XEC.9 |
305 |
5 |
174.577957 |
152.810670 |
-5.621341 |
8.051180e-39 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1387_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4754_C|T, 6183_A|G, 7842_A|G, 8074_C|T, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10702_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13968_C|T, 14408_C|T, 15540_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19728_T|C, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22224_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|T, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
25668_A|G, 26058_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26832_G|T, 26833_C|T, 26858_C|T, 27084_G|T, 27107_A|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29499_A|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/MN-MDH-46757/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.32 + BR.3 + XEC.32 | BC BR: 5-6, 9-10 | BC BR coord: 2060 - 2061, 3430 - 3431 |
| Direction L1: << | Initial region span: 1-3,6-9,10-147 | Gap history (edge excluded): 3-10 -> 3-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.19e-07 | |
| Rec. model vs L1: 6.38e-15 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEC.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
3 |
4.718819 |
None |
None |
None |
* |
* |
* |
| |||||
BR.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BR.3 |
23 |
6 |
9.952023 |
NaN |
NaN |
NaN |
* |
* |
* |
| B.1.568 |
466 |
7 |
8.694898 |
-1.305102 |
12.610205 |
1.294242e-05 |
* |
* |
|
| GS.1 |
109 |
6 |
8.676527 |
8.676527 |
-7.353054 |
2.794310e-01 |
* |
* |
|
| XBB.1.5.52 |
654 |
6 |
8.080372 |
8.080372 |
-6.160744 |
1.541237e-01 |
* |
* |
|
| GJ.3 |
25 |
8 |
6.941899 |
-1.980893 |
13.961786 |
6.589718e-06 |
|
|
|
| BA.4.1.2 |
19 |
8 |
6.941899 |
-1.980893 |
13.961786 |
6.589718e-06 |
|
|
|
| XBB.1.3 |
10 |
8 |
5.737926 |
-3.184866 |
16.369732 |
1.974886e-06 |
|
|
|
| LP.8.1 |
1124 |
6 |
5.683011 |
5.683011 |
-1.366022 |
1.405187e-02 |
* |
* |
|
| B.1.36.9 |
152 |
8 |
5.009061 |
-22.064144 |
54.128289 |
1.247562e-14 |
|
|
|
| XBB.1.5.59 |
284 |
6 |
4.969515 |
4.969515 |
0.060970 |
6.874063e-03 |
* |
* |
|
| |||||
XEC.32 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
10 |
230.184908 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
8 |
225.447391 |
224.204075 |
-138.408150 |
9.256633e-04 |
* |
|
|
| XEC.9 |
305 |
10 |
224.875219 |
225.844096 |
-141.688192 |
4.771951e-03 |
* |
* |
|
| XEC.2 |
921 |
8 |
222.287797 |
206.852916 |
-103.705832 |
2.700498e-11 |
|
|
|
| XEC.18 |
165 |
10 |
217.703982 |
218.690965 |
-127.381929 |
3.726653e-06 |
|
* |
|
| KP.3.3 |
1715 |
8 |
216.503013 |
220.881331 |
-131.762663 |
3.329844e-05 |
* |
|
|
| XEC.14 |
193 |
10 |
210.716170 |
211.695253 |
-113.390506 |
3.415302e-09 |
|
* |
|
| XEC.29 |
135 |
15 |
210.702025 |
210.680829 |
-111.361658 |
1.237714e-09 |
|
|
|
| XEC.17 |
13 |
10 |
209.734212 |
210.739433 |
-111.478865 |
1.314250e-09 |
|
* |
|
| XEC.15 |
127 |
10 |
207.439707 |
208.429054 |
-106.858108 |
1.304541e-10 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1513_C|T, 2060_G|A, 2790_C|T, 2918_C|T, 3037_C|T, 3176_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12436_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13711_A|G, 14408_C|T, 15714_C|T, 15756_T|A,
16323_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22329_C|T, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22792_C|T, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23896_C|T, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
25766_T|C, 26060_C|T, 26270_C|T, 26510_T|C, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/MT-MTPHL-4166796/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: XEC.4.6 + XEC.2 | BC BR: 3-4 | BC BR coord: 2060 - 2061 |
| Direction L1: << | Initial region span: 1-3,4-141 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.84e-42 | Rec. model vs L2: 3.74e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.4.6 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.6 |
10 |
3 |
7.272505 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4.6.1 |
13 |
3 |
3.917565 |
3.917565 |
0.164870 |
0.034909 |
* |
* |
|
| XEC.19 |
59 |
3 |
3.802697 |
3.802697 |
0.394607 |
0.031117 |
* |
* |
|
| XEC.28 |
39 |
3 |
3.777179 |
3.777179 |
0.445642 |
0.030197 |
* |
* |
|
| XEC.6 |
45 |
3 |
3.772984 |
3.772984 |
0.454033 |
0.030197 |
* |
* |
|
| XEC.15 |
127 |
3 |
3.766384 |
3.766384 |
0.467232 |
0.029897 |
* |
* |
|
| XEC.4 |
192 |
3 |
3.766259 |
3.766259 |
0.467482 |
0.029897 |
* |
* |
|
| XEC.4.1 |
68 |
3 |
3.765326 |
3.765326 |
0.469348 |
0.029897 |
* |
* |
|
| XEC.33 |
169 |
3 |
3.762595 |
3.762595 |
0.474811 |
0.029897 |
* |
* |
|
| XEC.8 |
592 |
3 |
3.756099 |
3.756099 |
0.487802 |
0.029599 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
4 |
244.566822 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
3 |
222.915227 |
221.185623 |
-142.371245 |
7.017703e-11 |
|
* |
|
| XEC.8 |
592 |
3 |
222.902776 |
216.628270 |
-133.256540 |
7.378764e-13 |
|
* |
|
| XEC.14 |
193 |
3 |
221.147457 |
214.861056 |
-129.722113 |
1.256847e-13 |
|
* |
|
| XEC.19 |
59 |
3 |
219.947967 |
213.661566 |
-127.323132 |
3.785550e-14 |
|
* |
|
| XEC.4 |
192 |
3 |
216.365937 |
210.079536 |
-120.159071 |
1.055249e-15 |
|
* |
|
| XEC.9 |
305 |
3 |
215.046790 |
208.760389 |
-117.520779 |
2.818942e-16 |
|
* |
|
| XEC.33 |
169 |
3 |
214.779127 |
208.498660 |
-116.997320 |
2.173549e-16 |
|
* |
|
| XEC.13 |
30 |
3 |
213.989807 |
207.703405 |
-115.406811 |
9.815341e-17 |
|
* |
|
| XEC.39 |
155 |
3 |
213.666943 |
207.387014 |
-114.774029 |
7.127400e-17 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T,
10323_A|G, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15177_A|T, 15714_C|T, 15756_T|A, 17410_C|T, 18131_C|T, 18163_A|G,
18395_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21774_C|T, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22624_C|T, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24865_C|T, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25139_T|C, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): USA/NC-CDC-LC1136794/2025
| Target: 5350 samples | Number of changes: 142 | |
| BC: MC.24 + XEC.2 | BC BR: 13-14 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-13,15-142 | Gap history (edge excluded): 13-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.82e-118 | Rec. model vs L2: 5.39e-21 | |
| Flags: Model_2BP_Bad_L1_opp | | |
MC.24 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.24 |
831 |
13 |
12.224416 |
NaN |
NaN |
NaN |
* |
* |
* |
| MC.6 |
366 |
4 |
9.223728 |
-3.937710 |
43.875419 |
9.541787e-08 |
|
|
|
| CQ.1 |
92 |
3 |
7.678656 |
-59.033676 |
154.067351 |
1.127652e-31 |
|
|
|
| BQ.1.1.67 |
297 |
3 |
6.510885 |
-63.994790 |
163.989580 |
7.908144e-34 |
|
|
|
| BQ.1.1.5 |
1362 |
3 |
5.676021 |
-51.796692 |
139.593384 |
1.572053e-28 |
|
|
|
| KS.1.3 |
45 |
13 |
5.226691 |
5.226691 |
25.546617 |
9.118820e-04 |
* |
* |
|
| XEC.25 |
13 |
13 |
5.079158 |
5.079158 |
25.841683 |
7.887982e-04 |
* |
* |
|
| XEC.18.3 |
13 |
13 |
5.079158 |
5.079158 |
25.841683 |
7.887982e-04 |
* |
* |
|
| XEC.32 |
42 |
13 |
5.079158 |
5.079158 |
25.841683 |
7.887982e-04 |
* |
* |
|
| XEC.22 |
23 |
13 |
5.079158 |
5.079158 |
25.841683 |
7.887982e-04 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
265.162474 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.36 |
30 |
4 |
259.769990 |
245.816197 |
-217.632395 |
8.740134e-05 |
* |
|
|
| XEC.38 |
34 |
4 |
259.579917 |
245.652848 |
-217.305695 |
7.447850e-05 |
* |
|
|
| XEC.29 |
135 |
15 |
259.430411 |
240.867333 |
-207.734667 |
6.190994e-07 |
|
* |
|
| XEC.31 |
66 |
15 |
258.976919 |
248.976919 |
-223.953839 |
2.060102e-03 |
* |
* |
|
| XEC.32 |
42 |
4 |
258.937850 |
244.950156 |
-215.900312 |
3.680047e-05 |
* |
|
|
| XEC.13 |
30 |
4 |
258.227125 |
244.273333 |
-214.546666 |
1.873719e-05 |
* |
|
|
| XEK.1 |
88 |
22 |
258.080150 |
239.567712 |
-205.135423 |
1.695700e-07 |
|
|
|
| XEK.5 |
28 |
22 |
257.040926 |
238.528488 |
-203.056975 |
5.993531e-08 |
|
|
|
| XEC.9 |
305 |
15 |
256.877298 |
240.794482 |
-207.588965 |
5.772445e-07 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 885_G|T, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3246_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7480_T|C, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 9693_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16887_C|T,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18743_A|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY12004/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: KP.2.5 + XEC.14 | BC BR: 3-4 | BC BR coord: 678 - 679 |
| Direction L1: << | Initial region span: 1-3,5-141 | Gap history (edge excluded): 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.13e-145 | Rec. model vs L2: 1.66e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.5 |
66 |
3 |
9.391444 |
NaN |
NaN |
NaN |
* |
* |
* |
| CM.3 |
22 |
3 |
6.639909 |
6.639909 |
-7.279818 |
0.063928 |
* |
* |
|
| BQ.1.1.7 |
1146 |
4 |
6.349948 |
2.677297 |
0.645407 |
0.001213 |
* |
* |
|
| KP.5 |
77 |
3 |
6.000082 |
6.000082 |
-6.000164 |
0.033709 |
* |
* |
|
| BN.1.2.3 |
117 |
3 |
5.653341 |
5.653341 |
-5.306682 |
0.023873 |
* |
* |
|
| BQ.1.26 |
121 |
3 |
5.611641 |
5.611641 |
-5.223282 |
0.022823 |
* |
* |
|
| BA.5.2.48 |
267 |
3 |
5.234796 |
5.234796 |
-4.469593 |
0.015686 |
* |
* |
|
| BF.7.24 |
444 |
3 |
4.319240 |
4.319240 |
-2.638479 |
0.006282 |
* |
* |
|
| BQ.1.11 |
1938 |
3 |
3.937737 |
3.937737 |
-1.875474 |
0.004296 |
* |
* |
|
| BF.3 |
355 |
3 |
3.844681 |
3.844681 |
-1.689363 |
0.003907 |
* |
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
5 |
276.499648 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
5 |
271.990858 |
261.990858 |
-225.981716 |
1.099846e-02 |
* |
* |
|
| XEC.9 |
305 |
5 |
269.837039 |
259.837039 |
-221.674078 |
1.274757e-03 |
* |
* |
|
| XEC.3 |
29 |
8 |
264.226759 |
254.140514 |
-210.281029 |
4.286672e-06 |
|
|
|
| XEC.13 |
30 |
8 |
262.691703 |
252.605458 |
-207.210917 |
9.235878e-07 |
|
|
|
| XEC.29 |
135 |
16 |
261.793841 |
241.762275 |
-185.524550 |
1.801169e-11 |
|
|
|
| XEC.2 |
921 |
16 |
261.562400 |
231.368682 |
-164.737365 |
5.536494e-16 |
|
|
|
| XEC.18 |
165 |
8 |
259.889050 |
249.790648 |
-201.581295 |
5.532727e-08 |
|
|
|
| XEC.33 |
169 |
8 |
257.721668 |
247.605535 |
-197.211071 |
6.223085e-09 |
|
|
|
| XEC.30 |
135 |
8 |
256.872574 |
246.748818 |
-195.497635 |
2.646574e-09 |
|
|
|
|
Target sequence
, 241_C|T, 592_T|C, 670_T|G, 875_C|A, 897_C|A, 2060_G|A, 2644_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6912_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11020_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NMDOH-2025013208/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.3.1.1 + XEC.27 | BC BR: 15-16 | BC BR coord: 7367 - 7368 |
| Direction L1: << | Initial region span: 1-12,16-145 | Gap history (edge excluded): 12-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.14e-55 | Rec. model vs L2: 2.03e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
12 |
12.481728 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.19 |
59 |
11 |
12.093654 |
-21.084319 |
92.168638 |
1.210073e-08 |
|
* |
|
| JN.1.8.1 |
1498 |
12 |
7.534864 |
-11.976290 |
73.952579 |
1.094547e-04 |
* |
* |
|
| PD.2.1 |
10 |
3 |
7.171233 |
-51.357525 |
152.715049 |
8.600945e-22 |
|
|
|
| XEC.32 |
42 |
14 |
6.995760 |
-3.004240 |
56.008481 |
8.607080e-01 |
* |
|
|
| KP.2.2 |
1334 |
12 |
6.656877 |
-12.688307 |
75.376614 |
5.354436e-05 |
* |
* |
|
| JN.1.7.8 |
34 |
3 |
5.902722 |
-36.516483 |
123.032967 |
2.407952e-15 |
|
|
|
| JN.1.11 |
43 |
3 |
5.583160 |
-30.464071 |
110.928141 |
1.021244e-12 |
|
|
|
| BQ.1.1.18 |
1989 |
4 |
5.425645 |
-45.601394 |
141.202788 |
2.729495e-19 |
|
|
|
| JN.1 |
17255 |
12 |
4.574337 |
0.945412 |
48.109176 |
4.470118e+01 |
* |
* |
|
| |||||
XEC.27 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.27 |
25 |
16 |
211.414459 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
16 |
203.967771 |
203.967771 |
-125.935542 |
5.843561e-04 |
* |
* |
|
| XEC.32 |
42 |
5 |
203.021342 |
183.489692 |
-84.979384 |
7.452922e-13 |
|
|
|
| XEK.5 |
28 |
16 |
201.087826 |
201.087826 |
-120.175651 |
3.280269e-05 |
* |
* |
|
| KP.3.3 |
1715 |
15 |
197.635552 |
196.601549 |
-111.203097 |
3.680673e-07 |
|
* |
|
| XEC.15 |
127 |
16 |
194.812415 |
194.812415 |
-107.624830 |
6.145258e-08 |
|
* |
|
| XEC.29 |
135 |
16 |
194.314388 |
194.314388 |
-106.628776 |
3.745971e-08 |
|
* |
|
| XEC.9 |
305 |
16 |
194.082834 |
194.082834 |
-106.165668 |
2.976299e-08 |
|
* |
|
| XEC.14 |
193 |
16 |
193.474180 |
193.474180 |
-104.948361 |
1.617175e-08 |
|
* |
|
| XEC.31 |
66 |
16 |
189.834481 |
189.834481 |
-97.668962 |
4.245463e-10 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|G, 1148_G|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6362_G|A, 7318_C|T, 7360_G|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15162_A|G, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18186_G|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22893_A|C, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25324_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28851_G|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29134_G|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-CDC-LC1135259/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: KP.3.3 + KS.1 + KP.3.3 | BC BR: 6-7, 16-17 | BC BR coord: 2060 - 2061, 7118 - 7119 |
| Direction L1: << | Initial region span: 1-6,7-15,17-147 | Gap history (edge excluded): 6-17 -> 15-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.07e-02 | |
| Rec. model vs L1: 1.23e-21 | Rec. model vs L2: 4.75e-90 | |
| Flags: Model_2BP_Best | | |
KP.3.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
6 |
7.681506 |
None |
None |
None |
* |
* |
* |
| |||||
KS.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KS.1 |
505 |
15 |
19.327580 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
16 |
15.830678 |
11.444617 |
19.110766 |
8.289586e+00 |
* |
* |
|
| MC.19 |
221 |
11 |
14.033159 |
-4.597003 |
51.194006 |
8.962916e-07 |
|
|
|
| XEC.11.1 |
166 |
11 |
12.714431 |
-19.879797 |
81.759593 |
2.061855e-13 |
|
|
|
| JN.1.32 |
436 |
11 |
11.706616 |
-2.545936 |
47.091871 |
6.962305e-06 |
|
|
|
| MC.10.1 |
650 |
11 |
11.319780 |
-7.311921 |
56.623843 |
5.933895e-08 |
|
|
|
| XEK.1 |
88 |
10 |
9.687591 |
-29.726620 |
101.453240 |
1.093022e-17 |
|
|
|
| JN.1 |
17255 |
11 |
9.428992 |
-4.824643 |
51.649287 |
7.121338e-07 |
|
|
|
| JN.3 |
321 |
10 |
8.393487 |
-22.187899 |
86.375797 |
2.046623e-14 |
|
|
|
| BL.1.3 |
10 |
9 |
8.287639 |
-60.142726 |
162.285453 |
6.720334e-31 |
|
|
|
| |||||
KP.3.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
17 |
240.659483 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
13 |
238.986499 |
231.297759 |
-174.595518 |
3.977608e-08 |
|
|
|
| XEC.6 |
45 |
13 |
235.908261 |
214.763895 |
-141.527791 |
2.621578e-15 |
|
|
|
| XEC.33 |
169 |
32 |
226.386729 |
224.576511 |
-161.153022 |
4.775201e-11 |
|
|
|
| XEC.2.1 |
265 |
32 |
226.166983 |
194.579219 |
-101.158437 |
4.490851e-24 |
|
|
|
| XEC.8 |
592 |
17 |
220.315464 |
220.758603 |
-153.517207 |
1.052345e-12 |
|
* |
|
| XEK.6 |
23 |
24 |
219.180173 |
189.773365 |
-91.546730 |
3.677424e-26 |
|
|
|
| XEC.31 |
66 |
17 |
218.670168 |
209.644854 |
-131.289707 |
1.566661e-17 |
|
* |
|
| XEC.29 |
135 |
17 |
218.229842 |
209.235063 |
-130.470125 |
1.039715e-17 |
|
* |
|
| XEC.9 |
305 |
17 |
218.101204 |
209.070081 |
-130.140163 |
8.815678e-18 |
|
* |
|
|
Target sequence
, 241_C|T, 337_C|T, 556_C|T, 670_T|G, 897_C|A, 2060_G|A, 2526_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4113_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 6218_T|C, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 9923_G|A, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12053_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21897_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24912_C|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25460_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28153_C|T,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-CDC-LC1136530/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: BQ.1.1.7 + XEC.8 | BC BR: 5-6 | BC BR coord: 874 - 875 |
| Direction L1: << | Initial region span: 1-5,6-144 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 2.51e-18 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BQ.1.1.7 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BQ.1.1.7 |
1146 |
5 |
7.593118 |
NaN |
NaN |
NaN |
* |
* |
* |
| BF.7.24 |
444 |
4 |
5.257856 |
-4.742144 |
23.484288 |
4.395189e-06 |
|
* |
|
| BQ.1.11 |
1938 |
4 |
4.655529 |
-5.344471 |
24.688942 |
2.400100e-06 |
|
* |
|
| JN.1.22 |
516 |
4 |
4.257580 |
-5.742420 |
25.484840 |
1.616900e-06 |
|
* |
|
| BA.2.86.1 |
1343 |
4 |
4.060345 |
-5.939655 |
25.879310 |
1.323806e-06 |
|
* |
|
| AY.43.9 |
285 |
3 |
3.744530 |
-16.255470 |
46.510940 |
4.386081e-11 |
|
|
|
| XBB.1.5.21 |
611 |
4 |
3.730621 |
-6.269379 |
26.538758 |
9.517152e-07 |
|
* |
|
| XFG.3 |
480 |
4 |
3.720497 |
-6.279503 |
26.559005 |
9.422455e-07 |
|
* |
|
| BQ.1 |
15159 |
4 |
3.542165 |
-6.457835 |
26.915670 |
7.870296e-07 |
|
* |
|
| BA.2.8 |
4985 |
4 |
2.995111 |
-7.004889 |
28.009777 |
4.563526e-07 |
|
* |
|
| |||||
XEC.8 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.8 |
592 |
6 |
263.956456 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
6 |
256.499648 |
256.499648 |
-212.999296 |
5.785417e-04 |
* |
* |
|
| XEC.2 |
921 |
17 |
252.616041 |
232.422324 |
-164.844647 |
2.016153e-14 |
|
|
|
| XEC.29 |
135 |
18 |
251.793841 |
231.762275 |
-163.524550 |
1.042051e-14 |
|
|
|
| XEC.9 |
305 |
18 |
250.850166 |
249.837039 |
-199.674078 |
7.374998e-07 |
|
|
|
| XEC.3 |
29 |
18 |
250.187912 |
244.140514 |
-188.281029 |
2.480018e-09 |
|
|
|
| XEC.13 |
30 |
18 |
248.651666 |
242.605458 |
-185.210917 |
5.343340e-10 |
|
|
|
| XEC.30 |
135 |
9 |
248.236963 |
248.113206 |
-196.226412 |
1.320613e-07 |
|
|
|
| XEC.17 |
13 |
9 |
247.151054 |
247.064810 |
-194.129620 |
4.621322e-08 |
|
|
|
| XEC.18 |
165 |
18 |
245.833461 |
239.790648 |
-179.581295 |
3.200913e-11 |
|
|
|
|
Target sequence
, 241_C|T, 516_518, 592_T|C, 670_T|G, 875_C|A, 897_C|A, 2060_G|A, 2644_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6912_A|G, 7765_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11020_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25987_G|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-CDC-LC1136873/2025
| Target: 5350 samples | Number of changes: 147 | |
| BC: XEC.9 + XEC.2 | BC BR: 6-7 | BC BR coord: 2060 - 2061 |
| Direction L1: << | Initial region span: 1-6,8-147 | Gap history (edge excluded): 6-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.68e-01 | |
| Rec. model vs L1: 1.59e+01 | Rec. model vs L2: 5.85e-16 | |
| Flags: Model_1BP_Best | | |
XEC.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.9 |
305 |
6 |
13.156712 |
NaN |
NaN |
NaN |
* |
* |
* |
| MV.1 |
127 |
4 |
10.771135 |
-9.228865 |
30.457729 |
1.898095e-10 |
|
|
|
| MV.2 |
21 |
4 |
10.746124 |
-9.253876 |
30.507753 |
1.851231e-10 |
|
|
|
| MB.1.1.1 |
53 |
4 |
10.634215 |
-9.365785 |
30.731570 |
1.658396e-10 |
|
|
|
| MM.1 |
35 |
5 |
10.514447 |
0.514447 |
10.971107 |
3.239797e-06 |
|
* |
|
| LF.7.6 |
15 |
4 |
10.389449 |
-9.610551 |
31.221103 |
1.298034e-10 |
|
|
|
| MH.1 |
51 |
4 |
9.400665 |
-10.599335 |
33.198670 |
4.823192e-11 |
|
|
|
| MC.29 |
54 |
4 |
7.904542 |
-12.095458 |
36.190916 |
1.081594e-11 |
|
|
|
| MD.1 |
19 |
4 |
7.850475 |
-12.149525 |
36.299050 |
1.023713e-11 |
|
|
|
| LF.1.1.1 |
109 |
4 |
7.647881 |
-12.352119 |
36.704239 |
8.381452e-12 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
8 |
239.758565 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
8 |
237.711377 |
227.711377 |
-153.422754 |
1.287349e-01 |
* |
* |
|
| XEC.14 |
193 |
8 |
237.384176 |
227.384176 |
-152.768351 |
9.301449e-02 |
* |
* |
|
| XEC.29 |
135 |
8 |
234.072747 |
224.072747 |
-146.145495 |
3.396533e-03 |
* |
* |
|
| XEC.32 |
42 |
8 |
231.497436 |
221.497436 |
-140.994873 |
2.573689e-04 |
* |
* |
|
| XEC.9 |
305 |
1 |
231.383122 |
218.226410 |
-134.452820 |
9.781673e-06 |
|
|
|
| XEC.31 |
66 |
8 |
230.316550 |
220.316550 |
-138.633101 |
7.908400e-05 |
* |
* |
|
| XEC.6 |
45 |
8 |
228.154591 |
218.154591 |
-134.309181 |
9.120372e-06 |
|
* |
|
| XEC.25 |
13 |
5 |
225.912519 |
214.233238 |
-126.466476 |
1.809582e-07 |
|
|
|
| XEC.30 |
135 |
8 |
224.898591 |
214.898591 |
-127.797182 |
3.518714e-07 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 936_C|T, 1102_C|T, 2060_G|A, 2177_G|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15219_A|G, 15360_C|T, 15714_C|T, 15756_T|A,
16887_C|T, 17410_C|T, 18163_A|G, 18490_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25096_C|T, 25207_C|T, 25584_C|T, 25810_C|T,
26060_C|T, 26093_A|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27654_C|T, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-NYCPHL-019769/2025
| Target: 5350 samples | Number of changes: 140 | |
| BC: BA.5.1.30 + XEC.2 | BC BR: 4-5 | BC BR coord: 672 - 673 |
| Direction L1: << | Initial region span: 1-4,7-140 | Gap history (edge excluded): 4-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 2.60e-10 | |
| Flags: Model_2BP_Bad_L1_opp | | |
BA.5.1.30 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| BA.5.1.30 |
4775 |
4 |
2.782144 |
NaN |
NaN |
NaN |
* |
* |
* |
| B.1.243 |
5209 |
3 |
2.218682 |
-7.781318 |
23.562636 |
0.000026 |
* |
* |
|
| B.1.258 |
3961 |
3 |
2.077191 |
-7.922809 |
23.845617 |
0.000022 |
* |
* |
|
| BA.2 |
443141 |
4 |
1.613450 |
1.613450 |
4.773100 |
0.311923 |
* |
* |
|
| BA.2.9 |
75328 |
4 |
1.443566 |
1.443566 |
5.112868 |
0.263158 |
* |
* |
|
| BA.5.6 |
14873 |
4 |
1.204625 |
1.204625 |
5.590750 |
0.207008 |
* |
* |
|
| BA.5.1 |
53705 |
4 |
0.653552 |
0.653552 |
6.692895 |
0.119433 |
* |
* |
|
| BQ.1.1 |
36940 |
4 |
0.483196 |
0.483196 |
7.033608 |
0.100761 |
* |
* |
|
| B.1.1.7 |
477665 |
3 |
0.192926 |
-9.807074 |
27.614149 |
0.000003 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
7 |
283.039884 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.33 |
169 |
4 |
261.294403 |
260.213439 |
-222.426878 |
7.284004e-08 |
|
|
|
| XEC.8 |
592 |
4 |
260.304259 |
259.243025 |
-220.486050 |
2.761242e-08 |
|
|
|
| KP.3.3 |
1715 |
4 |
260.291054 |
259.214706 |
-220.429413 |
2.679635e-08 |
|
|
|
| XEC.39 |
155 |
4 |
259.526352 |
258.445925 |
-218.891851 |
1.240706e-08 |
|
|
|
| XEC.2.1 |
265 |
15 |
258.853734 |
248.663436 |
-199.326872 |
7.018898e-13 |
|
|
|
| XEC.14 |
193 |
5 |
255.648685 |
247.805866 |
-197.611733 |
2.970131e-13 |
|
|
|
| XEC.4 |
192 |
4 |
251.954063 |
250.867164 |
-203.734328 |
6.334565e-12 |
|
|
|
| XEC.38 |
34 |
4 |
251.845531 |
250.788486 |
-203.576971 |
5.876851e-12 |
|
|
|
| XEC.17 |
13 |
4 |
251.298389 |
250.211491 |
-202.422981 |
3.290439e-12 |
|
|
|
|
Target sequence
, 241_C|T, 508_T|C, 642_A|G, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6941_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G,
18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21777_G|A, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C,
29733_29758, 29759_G|T
Case 72 (XEC): USA/NY-PRL-250318_81E02/2025
| Target: 5350 samples | Number of changes: 142 | |
| BC: XEC.18.3 + XEC.2 | BC BR: 12-13 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-12,14-142 | Gap history (edge excluded): 12-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.70e-01 | |
| Rec. model vs L1: 2.18e-46 | Rec. model vs L2: 1.05e-17 | |
| Flags: Model_1BP_Best | | |
XEC.18.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18.3 |
13 |
12 |
15.079158 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.22 |
23 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.24 |
11 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.25 |
13 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.4.3 |
10 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.16 |
23 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.17 |
13 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.32 |
42 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.4.1 |
68 |
12 |
15.049528 |
15.049528 |
-6.099057 |
0.970446 |
* |
* |
|
| XEC.13 |
30 |
12 |
15.045257 |
15.045257 |
-6.090514 |
0.965605 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
14 |
242.784986 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.6 |
45 |
5 |
238.591404 |
218.322530 |
-156.645061 |
5.249305e-07 |
|
|
|
| XEC.9 |
305 |
5 |
238.395407 |
218.081910 |
-156.163820 |
4.108655e-07 |
|
|
|
| XEC.8 |
592 |
5 |
238.391667 |
218.084474 |
-156.168948 |
4.129249e-07 |
|
|
|
| KP.3.3 |
1715 |
5 |
237.583410 |
221.818211 |
-163.636423 |
1.729661e-05 |
* |
|
|
| XEC.30 |
135 |
5 |
236.488199 |
216.226930 |
-152.453861 |
6.428111e-08 |
|
|
|
| XEC.39 |
155 |
5 |
234.839354 |
214.524750 |
-149.049500 |
1.174310e-08 |
|
|
|
| XEC.14 |
193 |
5 |
234.451604 |
214.106931 |
-148.213862 |
7.715767e-09 |
|
|
|
| XEC.33 |
169 |
5 |
234.450387 |
214.138066 |
-148.276132 |
7.990600e-09 |
|
|
|
| XEC.38 |
34 |
5 |
229.679604 |
209.379889 |
-138.759778 |
6.844436e-11 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1117_T|C, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6547_T|C, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G,
18555_C|T, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21599_21610, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21969_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25855_G|C, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C,
28884_G|C, 28958_C|A, 29353_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-PRL-250318_81E03/2025
| Target: 5350 samples | Number of changes: 140 | |
| BC: XBC.1.3.1 + XEC.14 | BC BR: 4-5 | BC BR coord: 686 - 687 |
| Direction L1: << | Initial region span: 1-4,5-140 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 9.94e-20 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XBC.1.3.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XBC.1.3.1 |
13 |
4 |
9.312302 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.4.1.11 |
107 |
4 |
8.829163 |
8.829163 |
-9.658327 |
0.618783 |
* |
* |
|
| NL.2.1 |
16 |
4 |
7.653830 |
7.653830 |
-7.307660 |
0.191092 |
* |
* |
|
| BA.4.8 |
14 |
4 |
7.084645 |
7.084645 |
-6.169289 |
0.108067 |
* |
* |
|
| BA.4.1.9 |
194 |
4 |
6.927847 |
6.927847 |
-5.855694 |
0.092551 |
* |
* |
|
| DC.1 |
59 |
4 |
6.801790 |
6.801790 |
-5.603581 |
0.081268 |
* |
* |
|
| BA.4.6.1 |
399 |
4 |
5.960023 |
5.960023 |
-3.920046 |
0.035084 |
* |
* |
|
| NL.2 |
237 |
4 |
5.913637 |
5.913637 |
-3.827273 |
0.033541 |
* |
* |
|
| NL.15 |
13 |
3 |
5.881306 |
-4.118694 |
16.237388 |
0.000001 |
|
* |
|
| NL.14 |
12 |
3 |
5.881306 |
-4.118694 |
16.237388 |
0.000001 |
|
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
5 |
280.259967 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
1 |
274.632388 |
273.404643 |
-254.809286 |
1.054172e-03 |
* |
|
|
| XEC.30 |
135 |
5 |
271.506529 |
271.506529 |
-251.013059 |
1.576710e-04 |
* |
* |
|
| XEC.33 |
169 |
3 |
268.403155 |
267.842439 |
-243.684878 |
4.037035e-06 |
|
|
|
| XEC.38 |
34 |
3 |
264.754147 |
263.306958 |
-234.613916 |
4.330490e-08 |
|
|
|
| XEC.4 |
192 |
1 |
263.872900 |
263.203786 |
-234.407573 |
3.918390e-08 |
|
|
|
| XEC.19 |
59 |
1 |
263.209301 |
261.566566 |
-231.133132 |
7.600894e-09 |
|
|
|
| XEC.17 |
13 |
5 |
262.851212 |
262.851212 |
-233.702425 |
2.747471e-08 |
|
* |
|
| XEC.16 |
23 |
1 |
261.776075 |
258.249253 |
-224.498507 |
2.761712e-10 |
|
|
|
| XEC.25 |
13 |
3 |
261.125888 |
257.994287 |
-223.988574 |
2.140097e-10 |
|
|
|
|
Target sequence
, 241_C|T, 509_523, 670_T|G, 686_694, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5806_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15026_C|T, 15714_C|T, 15756_T|A, 17078_A|G,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A,
29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-PRL-250325_82H02/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: XEC.2 + XEC.25 + XEC.2 | BC BR: 4-5, 6-7 | BC BR coord: 941 - 942, 2789 - 2790 |
| Direction L1: << | Initial region span: 1-3,5-6,7-141 | Gap history (edge excluded): 3-7 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.59e-02 | |
| Rec. model vs L1: 5.00e-17 | Rec. model vs L2: 5.21e-25 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
3 |
4.681558 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.25 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.25 |
13 |
5 |
11.679280 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
4 |
8.474236 |
7.425306 |
-10.850612 |
1.419309e-02 |
* |
* |
|
| XEC.4 |
192 |
5 |
7.888122 |
7.888122 |
-11.776244 |
2.259560e-02 |
* |
* |
|
| XEC.8 |
592 |
5 |
7.443363 |
7.443363 |
-10.886727 |
1.447981e-02 |
* |
* |
|
| XEC.18.3 |
13 |
6 |
6.286401 |
-3.713599 |
11.427198 |
2.060803e-07 |
|
* |
|
| XEC.28 |
39 |
6 |
6.286401 |
-3.713599 |
11.427198 |
2.060803e-07 |
|
* |
|
| XEC.4.1.4 |
23 |
6 |
6.286401 |
-3.713599 |
11.427198 |
2.060803e-07 |
|
* |
|
| XEC.4.1 |
68 |
6 |
6.286401 |
-3.713599 |
11.427198 |
2.060803e-07 |
|
* |
|
| XEC.38 |
34 |
6 |
6.286401 |
-3.713599 |
11.427198 |
2.060803e-07 |
|
* |
|
| XEC.36 |
30 |
6 |
6.286401 |
-3.713599 |
11.427198 |
2.060803e-07 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
7 |
222.193476 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
1 |
220.891895 |
213.466589 |
-114.933178 |
3.175644e-06 |
|
|
|
| XEC.8 |
592 |
5 |
215.678685 |
202.885329 |
-93.770658 |
8.072280e-11 |
|
|
|
| XEC.31 |
66 |
6 |
213.915344 |
202.317227 |
-92.634454 |
4.565080e-11 |
|
* |
|
| XEC.14 |
193 |
6 |
213.879702 |
213.099387 |
-114.198774 |
2.204522e-06 |
|
* |
|
| KP.3.3 |
1715 |
1 |
213.087069 |
211.945417 |
-111.890834 |
6.945512e-07 |
|
|
|
| XEC.15 |
127 |
6 |
210.046975 |
198.463519 |
-84.927039 |
9.714370e-13 |
|
* |
|
| XEC.6 |
45 |
6 |
204.645884 |
193.055830 |
-74.111659 |
4.343917e-15 |
|
* |
|
| XEC.32 |
42 |
6 |
203.927310 |
192.359728 |
-72.719457 |
2.167938e-15 |
|
* |
|
| XEC.30 |
135 |
6 |
202.522072 |
190.962207 |
-69.924413 |
5.346069e-16 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 936_C|T, 1102_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15219_A|G, 15360_C|T, 15714_C|T, 15756_T|A, 16887_C|T,
17410_C|T, 18163_A|G, 18490_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21610_T|C, 21641_G|T, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994,
22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A,
22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011,
23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25810_C|T, 26060_C|T, 26093_A|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27654_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-PRL-250401_82H04/2025
| Target: 5350 samples | Number of changes: 140 | |
| BC: XEC.2 + B.1.561 + XEC.2 | BC BR: 10-11, 13-14 | BC BR coord: 4330 - 4331, 6182 - 6183 |
| Direction L1: << | Initial region span: 1-10,11-13,14-140 | Gap history (edge excluded): 10-14 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.98e-06 | |
| Rec. model vs L1: 9.48e-25 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
10 |
5.098043 |
None |
None |
None |
* |
* |
* |
| |||||
B.1.561 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| B.1.561 |
1058 |
11 |
10.280817 |
NaN |
NaN |
NaN |
* |
* |
* |
| AY.94 |
218 |
13 |
6.229347 |
-13.770653 |
37.541307 |
3.591019e-11 |
|
|
|
| B.1.558 |
181 |
12 |
5.536276 |
-4.463724 |
18.927449 |
3.947552e-07 |
|
* |
|
| FY.1 |
23 |
13 |
5.220251 |
-14.779749 |
39.559498 |
1.307917e-11 |
|
|
|
| B.1.1.50 |
79 |
13 |
5.084910 |
-24.133193 |
58.266385 |
1.131763e-15 |
|
|
|
| AY.20 |
12743 |
11 |
3.657758 |
3.657758 |
2.684485 |
1.333431e-03 |
* |
* |
|
| MK.1 |
151 |
13 |
3.338465 |
-16.661535 |
43.323069 |
1.995752e-12 |
|
|
|
| LP.8.1.1 |
2345 |
13 |
2.792929 |
-4.310545 |
18.621089 |
4.609391e-07 |
|
|
|
| BQ.1.8 |
1899 |
12 |
1.751395 |
0.624919 |
8.750162 |
6.410424e-05 |
* |
* |
|
| AY.4.6 |
9691 |
13 |
1.479377 |
-4.957839 |
19.915678 |
2.406313e-07 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
14 |
270.890862 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.30 |
135 |
1 |
265.285409 |
284.461224 |
-278.922448 |
4.769515e+03 |
* |
|
|
| XEC.39 |
155 |
14 |
262.790929 |
284.208089 |
-278.416178 |
3.714502e+03 |
* |
* |
|
| XEC.18 |
165 |
14 |
260.586715 |
282.019496 |
-274.038993 |
4.157150e+02 |
* |
* |
|
| XEC.14 |
193 |
3 |
258.524785 |
279.144285 |
-268.288570 |
2.345304e+01 |
* |
|
|
| XEC.19 |
59 |
14 |
258.028613 |
279.445795 |
-268.891589 |
3.165829e+01 |
* |
* |
|
| XEC.29 |
135 |
19 |
255.570629 |
271.104945 |
-252.209890 |
7.559124e-03 |
* |
|
|
| XEK.5 |
28 |
19 |
255.506468 |
252.480483 |
-214.960966 |
6.162213e-11 |
|
|
|
| XEC.9 |
305 |
19 |
255.471357 |
273.425111 |
-256.850222 |
7.691918e-02 |
* |
|
|
| XEC.31 |
66 |
14 |
254.695317 |
276.118882 |
-262.237763 |
1.138828e+00 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4456_C|T, 5512_C|T, 5999_A|G, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 8655_C|T, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 18912_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A,
29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-PRL-250422_82D10/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.9 + XEC.2 | BC BR: 6-7 | BC BR coord: 2060 - 2061 |
| Direction L1: << | Initial region span: 1-6,8-146 | Gap history (edge excluded): 6-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.68e-01 | |
| Rec. model vs L1: 1.65e+01 | Rec. model vs L2: 5.82e-16 | |
| Flags: Model_1BP_Best | | |
XEC.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.9 |
305 |
6 |
13.156712 |
NaN |
NaN |
NaN |
* |
* |
* |
| MV.1 |
127 |
4 |
10.771135 |
-9.228865 |
30.457729 |
1.898095e-10 |
|
|
|
| MV.2 |
21 |
4 |
10.746124 |
-9.253876 |
30.507753 |
1.851231e-10 |
|
|
|
| MB.1.1.1 |
53 |
4 |
10.634215 |
-9.365785 |
30.731570 |
1.658396e-10 |
|
|
|
| MM.1 |
35 |
5 |
10.514447 |
0.514447 |
10.971107 |
3.239797e-06 |
|
* |
|
| LF.7.6 |
15 |
4 |
10.389449 |
-9.610551 |
31.221103 |
1.298034e-10 |
|
|
|
| MH.1 |
51 |
4 |
9.400665 |
-10.599335 |
33.198670 |
4.823192e-11 |
|
|
|
| MC.29 |
54 |
4 |
7.904542 |
-12.095458 |
36.190916 |
1.081594e-11 |
|
|
|
| MD.1 |
19 |
4 |
7.850475 |
-12.149525 |
36.299050 |
1.023713e-11 |
|
|
|
| LF.1.1.1 |
109 |
4 |
7.647881 |
-12.352119 |
36.704239 |
8.381452e-12 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
8 |
236.127429 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
8 |
234.200121 |
224.200121 |
-144.400243 |
1.458758e-01 |
* |
* |
|
| XEC.14 |
193 |
8 |
233.752114 |
223.752114 |
-143.504228 |
9.301449e-02 |
* |
* |
|
| XEC.29 |
135 |
8 |
230.454130 |
220.454130 |
-136.908259 |
3.447865e-03 |
* |
* |
|
| XEC.9 |
305 |
1 |
227.793871 |
214.637159 |
-125.274317 |
1.023190e-05 |
* |
|
|
| XEC.6 |
45 |
8 |
224.525821 |
214.525821 |
-125.051641 |
9.166088e-06 |
|
* |
|
| XEC.32 |
42 |
8 |
223.927888 |
213.927888 |
-123.855776 |
5.055671e-06 |
|
* |
|
| XEC.31 |
66 |
8 |
222.731908 |
212.731908 |
-121.463815 |
1.522739e-06 |
|
* |
|
| XEC.30 |
135 |
8 |
221.354081 |
211.354081 |
-118.708163 |
3.850087e-07 |
|
* |
|
| KP.3.3 |
1715 |
8 |
220.933277 |
210.933277 |
-117.866554 |
2.529687e-07 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 936_C|T, 1102_C|T, 2060_G|A, 2177_G|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15219_A|G, 15360_C|T, 15714_C|T, 15756_T|A,
16887_C|T, 17410_C|T, 18163_A|G, 18490_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25096_C|T, 25207_C|T, 25584_C|T, 25810_C|T, 26060_C|T, 26093_A|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27654_C|T, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/NY-PRL-250506_81E06/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: KP.3.3 + XEC.2 | BC BR: 14-15 | BC BR coord: 6806 - 6807 |
| Direction L1: << | Initial region span: 1-14,15-141 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.35e-01 | |
| Rec. model vs L1: 6.20e-29 | Rec. model vs L2: 3.56e-21 | |
| Flags: Model_1BP_Best | | |
KP.3.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
14 |
23.967811 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
14 |
16.681795 |
16.681795 |
2.636410 |
6.823281e-04 |
* |
* |
|
| XEC.27 |
25 |
7 |
15.661018 |
-5.004223 |
46.008446 |
2.608059e-13 |
|
|
|
| XEC.4.1.4 |
23 |
7 |
15.661018 |
-16.646216 |
69.292432 |
2.296834e-18 |
|
|
|
| XEC.8.1 |
12 |
7 |
15.661018 |
-5.007853 |
46.015706 |
2.595051e-13 |
|
|
|
| XEC.36 |
30 |
7 |
15.661018 |
-4.954743 |
45.909486 |
2.741777e-13 |
|
|
|
| XEC.32 |
42 |
7 |
15.661018 |
-4.920842 |
45.841683 |
2.839438e-13 |
|
|
|
| XEC.13 |
30 |
7 |
15.661018 |
-4.954743 |
45.909486 |
2.741777e-13 |
|
|
|
| XEC.3 |
29 |
7 |
15.661018 |
-4.955933 |
45.911866 |
2.741777e-13 |
|
|
|
| XEC.29 |
135 |
7 |
15.661018 |
-18.940102 |
73.880203 |
2.314322e-19 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
275.190515 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
15 |
269.660996 |
269.660996 |
-267.321992 |
3.965989e-03 |
* |
* |
|
| XEC.8 |
592 |
15 |
268.822922 |
268.822922 |
-265.645843 |
1.720741e-03 |
* |
* |
|
| XEC.18 |
165 |
11 |
267.325535 |
258.482620 |
-244.965240 |
5.560459e-08 |
|
|
|
| XEC.28 |
39 |
15 |
256.483069 |
256.483069 |
-240.966138 |
7.525264e-09 |
|
* |
|
| XEC.4.3 |
10 |
15 |
255.318638 |
245.906523 |
-219.813046 |
1.912873e-13 |
|
* |
|
| XEC.9 |
305 |
15 |
255.087002 |
249.004187 |
-226.008373 |
4.246186e-12 |
|
* |
|
| KP.3.3 |
1715 |
1 |
253.089716 |
229.121905 |
-186.243809 |
9.818683e-21 |
|
|
|
| XEC.4 |
192 |
15 |
251.816343 |
251.816343 |
-231.632687 |
7.052880e-11 |
|
* |
|
| XEK.1 |
88 |
26 |
246.667131 |
241.297117 |
-210.594235 |
1.903656e-15 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3433_G|A, 3565_T|C, 3688_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 6794_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10582_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23609_C|T, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28603_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/OK-CDC-2-8448976/2025
| Target: 5350 samples | Number of changes: 142 | |
| BC: JN.1.38 + XEC.2 | BC BR: 13-14 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-13,15-142 | Gap history (edge excluded): 13-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 7.38e-09 | |
| Rec. model vs L1: 1.34e-112 | Rec. model vs L2: 1.40e-21 | |
| Flags: Model_1BP_Best | | |
JN.1.38 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.38 |
247 |
13 |
23.844392 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.18 |
431 |
13 |
23.358963 |
23.358963 |
-14.717926 |
6.156972e-01 |
* |
* |
|
| JN.1.9 |
576 |
13 |
22.162810 |
22.162810 |
-12.325620 |
1.863740e-01 |
* |
* |
|
| JN.1 |
17255 |
13 |
20.813196 |
20.813196 |
-9.626392 |
4.831564e-02 |
* |
* |
|
| BA.2.86.1 |
1343 |
13 |
20.598213 |
20.598213 |
-9.196426 |
3.896856e-02 |
* |
* |
|
| JN.1.45 |
268 |
10 |
19.003710 |
16.208954 |
-0.417907 |
4.832386e-04 |
* |
|
|
| MC.13 |
807 |
12 |
18.983062 |
18.199194 |
-4.398388 |
3.535148e-03 |
* |
* |
|
| MC.40 |
21 |
10 |
18.817432 |
11.643355 |
8.713290 |
5.030456e-06 |
|
|
|
| XEC.2.6 |
13 |
10 |
18.623899 |
8.017767 |
15.964466 |
1.340571e-07 |
|
|
|
| JN.1.5 |
174 |
10 |
18.432058 |
13.317145 |
5.365710 |
2.672262e-05 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
260.483777 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.30 |
135 |
15 |
247.270755 |
237.270755 |
-202.541510 |
1.823049e-06 |
|
* |
|
| XEC.9 |
305 |
15 |
244.297465 |
234.297465 |
-196.594929 |
9.306199e-08 |
|
* |
|
| XEK.5 |
28 |
25 |
244.139319 |
229.553173 |
-187.106347 |
8.132358e-10 |
|
|
|
| XEC.2.2 |
273 |
25 |
243.474717 |
227.666603 |
-183.333206 |
1.228570e-10 |
|
|
|
| XEC.13 |
30 |
15 |
242.101942 |
232.101942 |
-192.203885 |
1.036325e-08 |
|
* |
|
| XEC.8 |
592 |
15 |
238.625867 |
228.625867 |
-185.251734 |
3.208652e-10 |
|
* |
|
| XEC.39 |
155 |
15 |
237.278104 |
227.278104 |
-182.556208 |
8.359813e-11 |
|
* |
|
| XEC.31 |
66 |
5 |
235.978142 |
222.891816 |
-173.783633 |
1.036678e-12 |
|
|
|
| XEC.29 |
135 |
15 |
233.278671 |
223.278671 |
-174.557342 |
1.531153e-12 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2485_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5672_C|T, 6183_A|G, 7842_A|G, 8157_C|T, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11005_C|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 15951_C|T, 16887_C|T,
17410_C|T, 18163_A|G, 18395_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20703_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): USA/OK-CDC-2-8506526/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.15 + XEC.2 | BC BR: 13-14 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-10,14-143 | Gap history (edge excluded): 10-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.47e-07 | |
| Rec. model vs L1: 2.58e-16 | Rec. model vs L2: 1.53e-24 | |
| Flags: Model_1BP_Best | | |
XEC.15 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.15 |
127 |
10 |
12.064195 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.5 |
126 |
10 |
11.428839 |
3.559696 |
28.880607 |
5.220458e-01 |
* |
* |
|
| KP.3.1.1 |
12013 |
10 |
11.301197 |
3.446806 |
29.106387 |
4.653339e-01 |
* |
* |
|
| MC.9 |
298 |
4 |
9.587999 |
-9.999051 |
55.998101 |
6.740241e-07 |
|
|
|
| MC.13 |
807 |
4 |
9.291477 |
-10.277047 |
56.554093 |
5.119699e-07 |
|
|
|
| MC.11 |
393 |
4 |
9.290290 |
-10.284216 |
56.568432 |
5.068757e-07 |
|
|
|
| LF.4.1 |
50 |
3 |
4.718819 |
-29.546164 |
95.092328 |
2.189726e-15 |
|
|
|
| LB.1.3.3 |
22 |
3 |
4.718819 |
-24.817034 |
85.634067 |
2.480862e-13 |
|
|
|
| LD.1.1 |
11 |
3 |
4.718819 |
-43.530791 |
123.061582 |
1.848338e-21 |
|
|
|
| LD.2 |
13 |
3 |
4.718819 |
-49.801673 |
135.603346 |
3.497478e-24 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
14 |
249.259018 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
8 |
244.758422 |
234.888416 |
-187.776831 |
5.743654e-07 |
|
|
|
| XEC.8 |
592 |
12 |
244.573331 |
242.428163 |
-202.856327 |
1.080858e-03 |
* |
|
|
| XEC.33 |
169 |
31 |
243.012472 |
232.285952 |
-182.571905 |
4.244741e-08 |
|
|
|
| XEC.2.1 |
265 |
31 |
242.855651 |
238.985469 |
-195.970939 |
3.448452e-05 |
* |
|
|
| XEC.14 |
193 |
12 |
240.191495 |
238.044637 |
-194.089274 |
1.347061e-05 |
* |
|
|
| XEC.13 |
30 |
12 |
236.933225 |
234.786367 |
-187.572733 |
5.171153e-07 |
|
|
|
| XEC.18 |
165 |
31 |
236.889053 |
233.938277 |
-185.876554 |
2.221307e-07 |
|
|
|
| XEC.29 |
135 |
15 |
235.836792 |
225.449683 |
-168.899367 |
4.565080e-11 |
|
* |
|
| XEC.4 |
192 |
12 |
235.346048 |
233.199190 |
-184.398380 |
1.059816e-07 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1976_G|A, 2060_G|A, 2790_C|T, 2937_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4092_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 9724_C|T, 10029_C|T, 10198_C|T, 10323_A|G, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11967_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24023_C|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25003_A|G, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): USA/OSPHL10236/2025
| Target: 5350 samples | Number of changes: 142 | |
| BC: XEC.30 + XEC.2 | BC BR: 13-14 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-13,16-142 | Gap history (edge excluded): 13-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.84e-15 | Rec. model vs L2: 1.65e-24 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.30 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.30 |
135 |
13 |
18.227570 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.33 |
169 |
13 |
17.353324 |
17.353324 |
-0.706648 |
4.168620e-01 |
* |
* |
|
| XEC.35.1 |
28 |
13 |
16.529119 |
16.529119 |
0.941762 |
1.826835e-01 |
* |
* |
|
| KP.3.1.1 |
12013 |
13 |
14.058814 |
14.058814 |
5.882372 |
1.545226e-02 |
* |
* |
|
| JN.1.2 |
650 |
13 |
12.025764 |
12.025764 |
9.948472 |
2.019309e-03 |
* |
* |
|
| XEC.27 |
25 |
14 |
11.845144 |
4.995777 |
24.008446 |
1.786951e-06 |
|
* |
|
| MC.1 |
932 |
13 |
9.774387 |
9.774387 |
14.451227 |
2.128336e-04 |
* |
* |
|
| KP.2.2 |
1334 |
13 |
9.740843 |
9.740843 |
14.518314 |
2.055133e-04 |
* |
* |
|
| NV.1 |
13 |
4 |
9.635840 |
-20.581855 |
75.163711 |
1.396469e-17 |
|
|
|
| KP.3.3 |
1715 |
13 |
9.558425 |
9.558425 |
14.883150 |
1.716591e-04 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
254.645226 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
6 |
247.877542 |
227.570350 |
-181.140699 |
8.459926e-04 |
* |
|
|
| XEC.31 |
66 |
16 |
246.188008 |
226.188008 |
-178.376017 |
2.128336e-04 |
* |
* |
|
| XEC.9 |
305 |
16 |
245.757797 |
219.674982 |
-165.349964 |
3.152184e-07 |
|
* |
|
| XEC.28 |
39 |
16 |
245.722025 |
225.722025 |
-177.444049 |
1.330215e-04 |
* |
* |
|
| XEC.29 |
135 |
16 |
245.681045 |
217.117967 |
-160.235935 |
2.449002e-08 |
|
* |
|
| XEC.14 |
193 |
6 |
245.674335 |
225.329662 |
-176.659324 |
9.006310e-05 |
* |
|
|
| XEC.19 |
59 |
16 |
245.468024 |
225.468024 |
-176.936048 |
1.035972e-04 |
* |
* |
|
| XEC.17 |
13 |
6 |
244.461986 |
224.101646 |
-174.203293 |
2.632478e-05 |
* |
|
|
| XEC.2.3 |
28 |
16 |
243.530331 |
215.172045 |
-156.344090 |
3.484295e-09 |
|
* |
|
|
Target sequence
, 241_C|T, 344_C|T, 670_T|G, 897_C|A, 1281_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6334_T|C, 7385_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26078_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28511_C|T, 28639_C|A, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 72 (XEC): USA/PA-CDC-LC1136045/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.29 + XEC.39 | BC BR: 11-12 | BC BR coord: 4330 - 4331 |
| Direction L1: << | Initial region span: 1-11,18-143 | Gap history (edge excluded): 11-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 6.54e-01 | |
| Rec. model vs L1: 2.29e-15 | Rec. model vs L2: 3.66e-07 | |
| Flags: Model_1BP_Best | | |
XEC.29 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.29 |
135 |
11 |
24.521489 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
11 |
22.952481 |
22.952481 |
-21.904962 |
2.080452e-01 |
* |
* |
|
| XEC.5 |
126 |
13 |
15.744161 |
11.405366 |
1.189268 |
2.014781e-06 |
|
|
|
| KP.3.1.1 |
12013 |
13 |
15.671634 |
12.108195 |
-0.216389 |
4.077608e-06 |
|
|
|
| XEC.30 |
135 |
13 |
15.617739 |
11.347936 |
1.304127 |
1.906960e-06 |
|
|
|
| MC.24 |
831 |
11 |
15.235110 |
15.235110 |
-6.470219 |
9.280593e-05 |
* |
* |
|
| XEC.8 |
592 |
13 |
14.832127 |
11.347409 |
1.305181 |
1.897449e-06 |
|
|
|
| KP.3.1 |
1957 |
11 |
13.501014 |
13.501014 |
-3.002028 |
1.637098e-05 |
* |
* |
|
| KP.2.15 |
253 |
13 |
12.593569 |
7.569547 |
8.860906 |
4.352197e-08 |
|
|
|
| XEC.11 |
16 |
13 |
12.300046 |
5.897558 |
12.204885 |
8.192883e-09 |
|
|
|
| |||||
XEC.39 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.39 |
155 |
18 |
258.151444 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
18 |
256.051133 |
227.003390 |
-170.006780 |
5.181010e+00 |
* |
* |
|
| XEC.31 |
66 |
18 |
255.067225 |
222.279959 |
-160.559919 |
4.595926e-02 |
* |
* |
|
| XEC.2.1 |
265 |
18 |
254.687825 |
214.074118 |
-144.148235 |
1.255992e-05 |
* |
* |
|
| XEC.29 |
135 |
18 |
254.626899 |
207.842734 |
-131.685468 |
2.473615e-08 |
|
* |
|
| XEC.9 |
305 |
18 |
254.498261 |
215.628180 |
-147.256359 |
5.947229e-05 |
* |
* |
|
| XEC.28 |
39 |
18 |
254.424695 |
214.662889 |
-145.325779 |
2.265794e-05 |
* |
* |
|
| XEC.19 |
59 |
18 |
254.173774 |
214.598744 |
-145.197488 |
2.123202e-05 |
* |
* |
|
| XEC.14 |
193 |
18 |
254.136049 |
221.348784 |
-158.697567 |
1.813340e-02 |
* |
* |
|
| XEC.2 |
921 |
18 |
254.112980 |
226.521723 |
-169.043447 |
3.189933e+00 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2462_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5869_C|T, 6183_A|G, 6402_C|T, 6693_A|G, 7842_A|G, 8140_C|T, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10870_G|T, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29461_T|C, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY11147/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.33 + XEC.2 | BC BR: 14-15 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-14,16-145 | Gap history (edge excluded): 14-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.90e-01 | |
| Rec. model vs L1: 5.46e-32 | Rec. model vs L2: 3.98e-24 | |
| Flags: Model_1BP_Best | | |
XEC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.33 |
169 |
14 |
17.783166 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
14 |
17.681102 |
17.681102 |
-3.362204 |
9.003245e-01 |
* |
* |
|
| XEC.16 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.4.3 |
10 |
12 |
15.079158 |
-7.384864 |
46.769728 |
1.171677e-11 |
|
|
|
| XEC.32 |
42 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.17 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.22 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.18.3 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.24 |
11 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.25 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
271.351893 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
28 |
245.024085 |
230.424664 |
-184.849328 |
3.710592e-14 |
|
|
|
| XEC.29 |
135 |
16 |
242.299684 |
232.299684 |
-188.599368 |
2.419610e-13 |
|
* |
|
| XEC.25 |
13 |
28 |
237.617708 |
216.556357 |
-157.112714 |
3.513813e-20 |
|
|
|
| XEC.30 |
135 |
28 |
234.867262 |
220.260406 |
-164.520813 |
1.428367e-18 |
|
|
|
| XEC.2.1 |
265 |
28 |
229.985151 |
205.687253 |
-135.374506 |
6.683403e-25 |
|
|
|
| XEC.5 |
126 |
28 |
227.124600 |
212.525180 |
-149.050360 |
6.245568e-22 |
|
|
|
| XEC.18 |
165 |
28 |
226.505286 |
211.905866 |
-147.811731 |
3.359768e-22 |
|
|
|
| XEC.9 |
305 |
24 |
225.734380 |
215.706172 |
-155.412344 |
1.501856e-20 |
|
|
|
| XEC.39 |
155 |
5 |
223.777073 |
209.859526 |
-143.719052 |
4.346875e-23 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 915_A|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6638_C|T, 7842_A|G, 7852_T|C, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11200_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16308_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22594_C|T, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25613_C|T, 26060_C|T,
26093_A|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/PA-CDC-LC1136147/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: JN.1 + XEC.2 | BC BR: 23-24 | BC BR coord: 11047 - 11048 |
| Direction L1: << | Initial region span: 1-23,25-143 | Gap history (edge excluded): 23-25 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 8.38e-04 | |
| Rec. model vs L1: 5.50e-37 | Rec. model vs L2: 2.27e-15 | |
| Flags: Model_1BP_Best | | |
JN.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
23 |
38.964896 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.20 |
66 |
21 |
37.160733 |
30.749040 |
-7.498080 |
2.705645e-04 |
* |
|
|
| JN.1.7.5 |
427 |
23 |
35.922361 |
35.922361 |
-17.844722 |
4.759631e-02 |
* |
* |
|
| JN.1.13.1 |
751 |
21 |
34.713774 |
28.302081 |
-2.604161 |
2.334798e-05 |
* |
|
|
| LF.4 |
38 |
23 |
33.218853 |
33.218853 |
-12.437707 |
3.198735e-03 |
* |
* |
|
| JN.1.4 |
8971 |
23 |
32.984622 |
32.984622 |
-11.969244 |
2.528826e-03 |
* |
* |
|
| KP.1.1 |
593 |
21 |
32.870851 |
26.459158 |
1.081684 |
3.708066e-06 |
|
|
|
| LB.1.3.1 |
292 |
23 |
32.739976 |
32.739976 |
-11.479952 |
1.979324e-03 |
* |
* |
|
| JN.1.4.6 |
167 |
21 |
31.945957 |
25.534263 |
2.931473 |
1.470365e-06 |
|
|
|
| XDY.3 |
16 |
13 |
27.833353 |
7.413717 |
39.172567 |
1.986137e-14 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
25 |
248.985986 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
4 |
239.296957 |
218.982638 |
-189.965275 |
2.061154e-09 |
|
|
|
| XEC.8 |
592 |
4 |
239.081990 |
226.050856 |
-204.101712 |
2.412131e-06 |
|
|
|
| XEC.29 |
135 |
25 |
234.694456 |
224.694456 |
-201.388913 |
6.222026e-07 |
|
* |
|
| XEC.18 |
165 |
40 |
233.975527 |
206.282372 |
-164.564745 |
6.257473e-15 |
|
|
|
| XEC.4 |
192 |
40 |
233.775322 |
206.076946 |
-164.153891 |
5.097633e-15 |
|
|
|
| XEK.5 |
28 |
25 |
232.964077 |
222.964077 |
-197.928154 |
1.103068e-07 |
|
* |
|
| XEC.2.2 |
273 |
25 |
232.209266 |
222.209266 |
-196.418532 |
5.184538e-08 |
|
* |
|
| XEC.39 |
155 |
4 |
227.394284 |
214.362558 |
-180.725116 |
2.030813e-11 |
|
|
|
| XEC.31 |
66 |
40 |
227.359801 |
209.973397 |
-171.946794 |
2.518356e-13 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9120_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T,
10447_G|A, 10449_C|A, 11005_C|T, 11042_G|T, 11243_G|A, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 15951_C|T, 16887_C|T, 17410_C|T,
18109_C|T, 18163_A|G, 18395_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26029_C|A, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/SC-CDC-2-8448555/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: KS.1.1.1 + XEC.13 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,10-144 | Gap history (edge excluded): 4-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 5.21e-147 | Rec. model vs L2: 5.92e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KS.1.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KS.1.1.1 |
20 |
4 |
13.218879 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.53 |
62 |
4 |
11.072687 |
11.072687 |
-14.145374 |
0.117068 |
* |
* |
|
| KP.3.1.3 |
46 |
4 |
10.134678 |
10.134678 |
-12.269355 |
0.045730 |
* |
* |
|
| JN.1.21 |
60 |
4 |
9.852167 |
9.852167 |
-11.704335 |
0.034390 |
* |
* |
|
| KR.1 |
62 |
4 |
9.026165 |
9.026165 |
-10.052329 |
0.015071 |
* |
* |
|
| KP.2.3.3 |
149 |
4 |
8.155586 |
8.155586 |
-8.311173 |
0.006314 |
* |
* |
|
| NY.15 |
216 |
4 |
7.866899 |
7.866899 |
-7.733798 |
0.004724 |
* |
* |
|
| KP.3.2.3 |
759 |
4 |
7.676542 |
7.676542 |
-7.353083 |
0.003907 |
* |
* |
|
| JN.1.16.1 |
466 |
4 |
7.084762 |
7.084762 |
-6.169525 |
0.002166 |
* |
* |
|
| NY.13 |
463 |
4 |
7.071031 |
7.071031 |
-6.142063 |
0.002133 |
* |
* |
|
| |||||
XEC.13 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.13 |
30 |
10 |
260.771155 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
10 |
254.284706 |
225.364714 |
-146.729428 |
1.285118e-10 |
|
* |
|
| XEC.14 |
193 |
10 |
251.084775 |
238.452271 |
-172.904541 |
6.189940e-05 |
* |
* |
|
| XEC.8 |
592 |
10 |
250.518260 |
237.873860 |
-171.747721 |
3.483110e-05 |
* |
* |
|
| KP.3.3 |
1715 |
10 |
245.519445 |
228.327809 |
-152.655618 |
2.492449e-09 |
|
* |
|
| XEC.40 |
52 |
10 |
235.248580 |
214.979366 |
-125.958732 |
3.970041e-15 |
|
* |
|
| XEC.25 |
13 |
10 |
233.442831 |
220.810326 |
-137.620652 |
1.351238e-12 |
|
* |
|
| XEC.4 |
192 |
10 |
232.866614 |
220.234109 |
-136.468218 |
7.603481e-13 |
|
* |
|
| XEC.36 |
30 |
10 |
232.239472 |
219.606968 |
-135.213935 |
4.049552e-13 |
|
* |
|
| XEC.28 |
39 |
10 |
231.672960 |
219.014479 |
-134.028958 |
2.244777e-13 |
|
* |
|
|
Target sequence
, 241_C|T, 599_G|A, 670_T|G, 897_C|A, 1567_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3354_G|A, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G,
18449_G|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20811_T|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25571_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26625_C|T, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29296_C|T, 29510_A|C, 29700_A|G
Case 72 (XEC): USA/SC-CDC-LC1134656/2025
| Target: 5350 samples | Number of changes: 141 | |
| BC: XEC.18 + XEC.27 | BC BR: 131-132 | BC BR coord: 28311 - 28312 |
| Direction L1: >> | Initial region span: 1-131,133-141 | Gap history (edge excluded): 131-133 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.62e-17 | Rec. model vs L2: 2.87e-44 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.18 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
131 |
271.688833 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
141 |
268.317616 |
265.146982 |
-256.293964 |
1.437284e-03 |
* |
|
|
| XEC.30 |
135 |
138 |
263.288840 |
262.725065 |
-251.450130 |
1.278056e-04 |
* |
|
|
| XEC.24 |
11 |
131 |
260.788452 |
260.788452 |
-247.576903 |
1.845823e-05 |
* |
* |
|
| XEC.36 |
30 |
138 |
260.613602 |
260.004365 |
-246.008729 |
8.419164e-06 |
|
|
|
| XEC.2 |
921 |
141 |
260.553750 |
257.833657 |
-241.667314 |
9.612801e-07 |
|
|
|
| XEC.17 |
13 |
138 |
259.424370 |
258.815133 |
-243.630265 |
2.561289e-06 |
|
|
|
| XEC.32 |
42 |
138 |
256.181274 |
255.572037 |
-237.144074 |
9.980975e-08 |
|
|
|
| MC.24.1 |
25 |
131 |
256.095961 |
256.095961 |
-238.191921 |
1.687243e-07 |
|
* |
|
| XEC.4 |
192 |
138 |
255.591885 |
255.008924 |
-236.017848 |
5.701223e-08 |
|
|
|
| |||||
XEC.27 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.27 |
25 |
133 |
17.509500 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.40 |
52 |
133 |
17.289559 |
7.289559 |
5.420882 |
0.802519 |
* |
* |
|
| PG.4 |
14 |
133 |
16.831188 |
6.831188 |
6.337624 |
0.506617 |
* |
* |
|
| XEC.15 |
127 |
133 |
15.487799 |
5.487799 |
9.024402 |
0.132655 |
* |
* |
|
| KP.3.3 |
1715 |
133 |
14.754545 |
4.754545 |
10.490911 |
0.063609 |
* |
* |
|
| XEC.2.1 |
265 |
133 |
14.696635 |
4.696635 |
10.606729 |
0.059905 |
* |
* |
|
| KP.3.3.3 |
288 |
133 |
14.512208 |
4.512208 |
10.975585 |
0.049787 |
* |
* |
|
| KP.3.3.4 |
292 |
133 |
13.929129 |
3.929129 |
12.141742 |
0.027876 |
* |
* |
|
| XEC.8 |
592 |
133 |
13.170634 |
3.170634 |
13.658732 |
0.013037 |
* |
* |
|
| XEC.2 |
921 |
133 |
12.720093 |
2.720093 |
14.559813 |
0.008312 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10078_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17339_C|T, 17410_C|T, 18163_A|G, 18492_A|G,
18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T,
26846_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28329_G|A, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29421_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/SD-CDC-2-8398256/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: JN.1.59 + XEC.14 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-145 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.22e-105 | Rec. model vs L2: 9.13e-16 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.59 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.59 |
77 |
4 |
6.038966 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.7 |
1974 |
4 |
4.716446 |
4.716446 |
-1.432892 |
2.658030e-01 |
* |
* |
|
| KP.2 |
1589 |
4 |
3.002048 |
3.002048 |
1.995904 |
4.783489e-02 |
* |
* |
|
| LB.1.7 |
1971 |
4 |
2.791065 |
2.791065 |
2.417870 |
3.877421e-02 |
* |
* |
|
| BF.7.24 |
444 |
3 |
2.063169 |
-7.936831 |
23.873662 |
8.525790e-07 |
|
* |
|
| BQ.1.1.7 |
1146 |
3 |
1.807521 |
-8.192479 |
24.384959 |
6.606775e-07 |
|
* |
|
| JN.1 |
17255 |
4 |
1.715084 |
1.715084 |
4.569833 |
1.323355e-02 |
* |
* |
|
| BA.2.3.2 |
372 |
3 |
1.534247 |
-8.465753 |
24.931506 |
5.018322e-07 |
|
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
6 |
240.295382 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
6 |
239.727092 |
229.727092 |
-153.454184 |
5.655254e-01 |
* |
* |
|
| XEC.9 |
305 |
6 |
234.491446 |
224.491446 |
-142.982892 |
3.012455e-03 |
* |
* |
|
| XEC.33 |
169 |
6 |
232.632946 |
222.632946 |
-139.265893 |
4.713074e-04 |
* |
* |
|
| XEC.2 |
921 |
15 |
230.378687 |
206.576245 |
-107.152490 |
4.994993e-11 |
|
|
|
| XEC.17 |
13 |
6 |
227.101708 |
217.101708 |
-128.203415 |
1.859877e-06 |
|
* |
|
| XEC.2.2 |
273 |
15 |
226.754570 |
194.754347 |
-83.508695 |
3.674296e-16 |
|
|
|
| XEC.15 |
127 |
6 |
226.032571 |
216.032571 |
-126.065142 |
6.411515e-07 |
|
* |
|
| XEC.2.1 |
265 |
36 |
225.453383 |
196.765848 |
-87.531697 |
2.742244e-15 |
|
|
|
| KP.3.3 |
1715 |
4 |
224.481700 |
220.880935 |
-135.761870 |
8.149246e-05 |
* |
|
|
|
Target sequence
, 241_C|T, 670_T|G, 733_T|C, 897_C|A, 1348_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7644_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11124_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14646_T|G, 14868_T|C, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19324_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20436_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25655_T|C,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/TN-CDC-LC1135518/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.4.3 + XEC.2 | BC BR: 11-12 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-8,13-145 | Gap history (edge excluded): 8-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.76e-02 | |
| Rec. model vs L1: 4.38e-36 | Rec. model vs L2: 1.07e-17 | |
| Flags: Model_1BP_Best | | |
XEC.4.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.3 |
10 |
8 |
19.322509 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.17 |
13 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.18.3 |
13 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.4.1.4 |
23 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.16 |
23 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.22 |
23 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.24 |
11 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.25 |
13 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.8.1 |
12 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| XEC.32 |
42 |
8 |
19.322509 |
11.469367 |
-0.938735 |
1.0 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
13 |
242.091895 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
3 |
231.964442 |
221.623149 |
-155.246297 |
2.851729e-05 |
* |
|
|
| XEC.13 |
30 |
1 |
231.121914 |
219.686448 |
-151.372897 |
4.098047e-06 |
|
|
|
| XEC.15 |
127 |
1 |
230.572144 |
219.200663 |
-150.401327 |
2.523156e-06 |
|
|
|
| XEC.29 |
135 |
14 |
228.813573 |
208.426465 |
-128.852930 |
5.277413e-11 |
|
* |
|
| XEC.4 |
192 |
1 |
227.715782 |
216.304723 |
-144.609446 |
1.395281e-07 |
|
|
|
| XEC.30 |
135 |
1 |
224.844883 |
213.496946 |
-138.993893 |
8.400287e-09 |
|
|
|
| XEC.2.1 |
265 |
13 |
221.487393 |
211.487393 |
-134.974787 |
1.125543e-09 |
|
* |
|
| XEC.32 |
42 |
1 |
220.173020 |
208.703653 |
-129.407306 |
6.982703e-11 |
|
|
|
| XEC.33 |
169 |
28 |
218.514240 |
204.157655 |
-120.315309 |
7.415751e-13 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3871_G|C, 4184_G|A, 4321_C|T, 5720_G|A, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10323_A|G, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11530_C|T, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15735_T|C, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19493_G|A, 19716_C|T, 19955_C|T, 20055_A|G, 20555_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29095_C|T, 29409_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): USA/TN-SPHL-1120/2025
| Target: 5350 samples | Number of changes: 146 | |
| BC: KP.3.3 + KP.2.2 | BC BR: 142-143 | BC BR coord: 28883 - 28884 |
| Direction L1: >> | Initial region span: 1-137,143-146 | Gap history (edge excluded): 137-143 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 7.77e-06 | Rec. model vs L2: 1.25e-91 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.3.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
137 |
230.577621 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
143 |
224.941378 |
221.333078 |
-138.666156 |
4.274877e-03 |
* |
|
|
| XEC.32 |
42 |
143 |
219.836446 |
216.228146 |
-128.456292 |
2.593285e-05 |
* |
|
|
| XEC.33 |
169 |
137 |
218.993436 |
215.209734 |
-126.419468 |
9.351255e-06 |
|
* |
|
| XEC.4 |
192 |
137 |
218.547775 |
214.743732 |
-125.487465 |
5.873852e-06 |
|
* |
|
| XEC.31 |
66 |
137 |
218.028254 |
214.235219 |
-124.470439 |
3.527222e-06 |
|
* |
|
| XEC.14 |
193 |
143 |
214.782719 |
211.174419 |
-118.348837 |
1.653833e-07 |
|
|
|
| XEC.24 |
11 |
137 |
211.567155 |
201.586271 |
-99.172541 |
1.131378e-11 |
|
* |
|
| XEC.18 |
165 |
137 |
211.024563 |
201.565082 |
-99.130165 |
1.108975e-11 |
|
* |
|
| XEC.36 |
30 |
137 |
210.783068 |
207.005301 |
-110.010603 |
2.555546e-09 |
|
* |
|
| |||||
KP.2.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.2 |
1334 |
143 |
9.703448 |
NaN |
NaN |
NaN |
* |
* |
* |
| BE.5 |
231 |
144 |
7.942662 |
-2.057338 |
12.114676 |
7.810825e-06 |
|
* |
|
| XEC.32 |
42 |
138 |
5.881863 |
-3.995542 |
15.991085 |
1.122446e-06 |
|
|
|
| BQ.1.10 |
2048 |
144 |
5.637057 |
-4.362943 |
16.725885 |
7.753122e-07 |
|
* |
|
| BQ.1.1 |
36940 |
144 |
5.577032 |
-0.638570 |
9.277141 |
3.215315e-05 |
* |
* |
|
| CH.1.1 |
4056 |
144 |
5.057243 |
-4.942757 |
17.885514 |
4.340961e-07 |
|
* |
|
| XEC.14 |
193 |
138 |
4.241647 |
-4.110738 |
16.221476 |
1.000511e-06 |
|
|
|
| BA.4.1 |
18821 |
144 |
4.219795 |
-2.014633 |
12.029266 |
8.129591e-06 |
|
* |
|
| XEC.2 |
921 |
138 |
3.357854 |
-4.122734 |
16.245469 |
9.856150e-07 |
|
|
|
| BA.2.12.1 |
107150 |
144 |
3.258876 |
-6.741124 |
21.482248 |
7.211527e-08 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6283_T|C, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11109_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13931_A|G, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G,
18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21697_C|T, 21711_C|T, 21718_G|A, 21738_T|C,
21765_21770, 21777_G|A, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23285_G|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23905_T|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28419_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29320_A|G, 29510_A|C, 29734_29759
Case 72 (XEC): USA/TX-USAFSAM-S23573/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: XEC.39 + MC.28.1.1 | BC BR: 140-141 | BC BR coord: 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-140,141-144 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.45e-16 | Rec. model vs L2: 2.01e-177 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.39 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.39 |
155 |
140 |
243.880226 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
144 |
242.728929 |
239.080917 |
-172.161835 |
8.229747e-03 |
* |
|
|
| XEC.18 |
165 |
140 |
230.499372 |
230.499372 |
-154.998744 |
1.545752e-06 |
|
* |
|
| XEC.19 |
59 |
140 |
229.962991 |
229.962991 |
-153.925982 |
9.052995e-07 |
|
* |
|
| XEC.29 |
135 |
140 |
226.268740 |
226.268740 |
-146.537480 |
2.249439e-08 |
|
* |
|
| XEC.15 |
127 |
140 |
225.086160 |
225.086160 |
-144.172320 |
6.877573e-09 |
|
* |
|
| XEC.36 |
30 |
140 |
223.100395 |
223.100395 |
-140.200790 |
9.448452e-10 |
|
* |
|
| XEC.8 |
592 |
143 |
222.587547 |
218.677428 |
-131.354857 |
1.131378e-11 |
|
|
|
| XEC.4 |
192 |
140 |
222.050643 |
222.050643 |
-138.101287 |
3.306370e-10 |
|
* |
|
| XEC.38 |
34 |
140 |
222.033037 |
222.033037 |
-138.066074 |
3.257145e-10 |
|
* |
|
| |||||
MC.28.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.28.1.1 |
129 |
141 |
9.672369 |
NaN |
NaN |
NaN |
* |
* |
* |
| BF.30 |
60 |
142 |
8.072392 |
-1.927608 |
13.855216 |
9.166088e-06 |
|
* |
|
| BQ.2 |
47 |
142 |
7.991120 |
-2.008880 |
14.017760 |
8.461365e-06 |
|
* |
|
| BA.2.10.2 |
48 |
141 |
7.665913 |
7.665913 |
-5.331826 |
1.346603e-01 |
* |
* |
|
| JC.5 |
136 |
142 |
7.493066 |
-8.808982 |
27.617964 |
9.424059e-09 |
|
* |
|
| XBB.1.5.75 |
85 |
141 |
7.399568 |
7.399568 |
-4.799137 |
1.033122e-01 |
* |
* |
|
| JC.5.1 |
53 |
142 |
7.314594 |
-8.932458 |
27.864915 |
8.358390e-09 |
|
* |
|
| LB.1.4 |
235 |
141 |
7.006154 |
7.006154 |
-4.012308 |
6.959935e-02 |
* |
* |
|
| JN.1.32.1 |
55 |
142 |
6.823753 |
-3.176247 |
16.352494 |
2.639292e-06 |
|
* |
|
| JN.1.18.2 |
51 |
141 |
6.690809 |
6.690809 |
-3.381617 |
5.079283e-02 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6040_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 15921_G|T, 16332_C|T, 17410_C|T, 18163_A|G,
18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20946_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23383_G|A, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A,
23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26176_C|T, 26270_C|T, 26289_T|C, 26529_G|C, 26577_C|G, 26610_A|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C,
28884_G|C, 28958_C|A, 29272_C|T, 29510_A|C, 29734_29759, 29769_C|T
Case 72 (XEC): USA/VA-CAV_VAS3N_00022765_01/2025
| Target: 5350 samples | Number of changes: 140 | |
| BC: LE.1 + XEC.18 | BC BR: 5-6 | BC BR coord: 672 - 673 |
| Direction L1: << | Initial region span: 1-5,8-140 | Gap history (edge excluded): 5-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.87e-01 | |
| Rec. model vs L1: 4.15e-98 | Rec. model vs L2: 5.48e-08 | |
| Flags: Model_1BP_Best | | |
LE.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LE.1 |
27 |
5 |
14.065224 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.9.3 |
20 |
3 |
7.111420 |
-1.801681 |
15.603363 |
1.288006e-07 |
|
|
|
| XFB.3 |
56 |
3 |
6.955858 |
-1.957243 |
15.914486 |
1.103068e-07 |
|
|
|
| NY.12.1 |
17 |
3 |
6.912387 |
-2.000714 |
16.001429 |
1.054531e-07 |
|
|
|
| XEL.5 |
19 |
3 |
6.879637 |
-2.033464 |
16.066928 |
1.018260e-07 |
|
|
|
| MC.13.2.4 |
37 |
3 |
6.742160 |
-10.006521 |
32.013041 |
3.519912e-11 |
|
|
|
| LC.1 |
10 |
3 |
6.582895 |
-2.330207 |
16.660413 |
7.581270e-08 |
|
|
|
| XEC.35.1 |
28 |
3 |
6.538559 |
-2.374542 |
16.749085 |
7.247675e-08 |
|
|
|
| LF.6 |
27 |
3 |
6.511211 |
-2.401891 |
16.803781 |
7.068729e-08 |
|
|
|
| LF.7.1.11 |
20 |
3 |
6.449363 |
-2.463738 |
16.927476 |
6.623876e-08 |
|
|
|
| |||||
XEC.18 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
8 |
291.947526 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
8 |
291.564307 |
285.175132 |
-280.350264 |
6.736800e-01 |
* |
* |
|
| XEC.31 |
66 |
8 |
291.162153 |
284.774240 |
-279.548480 |
4.515812e-01 |
* |
* |
|
| XEC.39 |
155 |
8 |
291.108436 |
284.729319 |
-279.458637 |
4.317105e-01 |
* |
* |
|
| XEC.14 |
193 |
8 |
285.929177 |
271.692770 |
-253.385541 |
9.422455e-07 |
|
* |
|
| XEC.17 |
13 |
8 |
284.947219 |
278.574574 |
-267.149148 |
9.164528e-04 |
* |
* |
|
| XEC.32 |
42 |
8 |
281.704123 |
275.331478 |
-260.662956 |
3.571285e-05 |
* |
* |
|
| MC.24.1 |
25 |
8 |
281.340506 |
274.967861 |
-259.935721 |
2.491601e-05 |
* |
* |
|
| XEC.4 |
192 |
8 |
280.978934 |
274.590540 |
-259.181080 |
1.703910e-05 |
* |
* |
|
| XEC.38 |
34 |
8 |
280.882119 |
274.509473 |
-259.018946 |
1.572907e-05 |
* |
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 515_G|T, 670_T|G, 897_C|A, 1250_A|G, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 17502_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T,
26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/VA-USAFSAM-S23569/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: KP.3.1.1 + XEC.2 | BC BR: 16-17 | BC BR coord: 6806 - 6807 |
| Direction L1: << | Initial region span: 1-16,17-143 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.77e-63 | Rec. model vs L2: 6.45e-25 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
16 |
15.169287 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.39 |
155 |
13 |
13.642950 |
-2.753732 |
41.507464 |
1.641615e-08 |
|
|
|
| XEC.9 |
305 |
13 |
13.335366 |
-3.054843 |
42.109685 |
1.216139e-08 |
|
|
|
| LB.1.3.1 |
292 |
5 |
6.340081 |
-19.620476 |
75.240952 |
7.778484e-16 |
|
|
|
| BW.1.1.2 |
55 |
4 |
6.082585 |
-83.370911 |
202.741822 |
1.601850e-43 |
|
|
|
| B.1.110.3 |
764 |
3 |
5.658809 |
-99.490300 |
234.980600 |
1.598802e-50 |
|
|
|
| XEC.38 |
34 |
13 |
5.581698 |
-10.808511 |
57.617021 |
5.212299e-12 |
|
|
|
| XEC.8.1 |
12 |
13 |
5.338246 |
-11.138974 |
58.277949 |
3.747246e-12 |
|
|
|
| XEC.18.3 |
13 |
13 |
5.258203 |
-11.132006 |
58.264011 |
3.784906e-12 |
|
|
|
| KP.2.2 |
1334 |
5 |
4.776716 |
-21.178024 |
78.356048 |
1.634540e-16 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
17 |
263.750030 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
17 |
256.339898 |
256.339898 |
-240.679797 |
6.051707e-04 |
* |
* |
|
| XEC.9 |
305 |
2 |
255.763346 |
248.818189 |
-225.636378 |
3.280827e-07 |
|
|
|
| XEC.18 |
165 |
4 |
255.329855 |
247.205583 |
-222.411165 |
6.525260e-08 |
|
|
|
| XEC.31 |
66 |
17 |
254.103847 |
254.103847 |
-236.207693 |
6.474850e-05 |
* |
* |
|
| XEC.8 |
592 |
17 |
247.985337 |
247.985337 |
-223.970674 |
1.423467e-07 |
|
* |
|
| KP.3.3 |
1715 |
8 |
247.348464 |
241.874679 |
-211.749358 |
3.160881e-10 |
|
|
|
| XEC.40 |
52 |
17 |
246.856476 |
246.856476 |
-221.712952 |
4.598273e-08 |
|
* |
|
| XEC.2.1 |
265 |
17 |
246.672384 |
246.672384 |
-221.344769 |
3.821644e-08 |
|
* |
|
| XEK.1.2 |
33 |
17 |
245.799046 |
241.412235 |
-210.824471 |
1.985461e-10 |
|
* |
|
|
Target sequence
, 106_C|T, 241_C|T, 601_C|T, 670_T|G, 897_C|A, 2060_G|A, 2062_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5477_C|T, 6183_A|G, 6794_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A,
23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23191_C|T, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26155_26157, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G,
26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28085_G|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/VT-25-003495-WGS-01/2025
| Target: 5350 samples | Number of changes: 144 | |
| BC: XEC.33 + XEC.2 | BC BR: 14-15 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-14,16-144 | Gap history (edge excluded): 14-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.90e-01 | |
| Rec. model vs L1: 4.89e-32 | Rec. model vs L2: 3.98e-24 | |
| Flags: Model_1BP_Best | | |
XEC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.33 |
169 |
14 |
17.783166 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
14 |
17.681102 |
17.681102 |
-3.362204 |
9.003245e-01 |
* |
* |
|
| XEC.16 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.4.3 |
10 |
12 |
15.079158 |
-7.384864 |
46.769728 |
1.171677e-11 |
|
|
|
| XEC.32 |
42 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.17 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.22 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.18.3 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.24 |
11 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.25 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
267.720756 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
28 |
241.392023 |
226.792602 |
-177.585205 |
3.710592e-14 |
|
|
|
| XEC.29 |
135 |
16 |
238.681067 |
228.681067 |
-181.362133 |
2.443927e-13 |
|
* |
|
| XEC.30 |
135 |
28 |
231.322752 |
216.715897 |
-157.431793 |
1.555087e-18 |
|
|
|
| XEC.25 |
13 |
28 |
229.899943 |
208.838593 |
-141.677185 |
5.911337e-22 |
|
|
|
| XEC.2.1 |
265 |
28 |
226.378931 |
202.081034 |
-128.162068 |
6.852594e-25 |
|
|
|
| XEC.5 |
126 |
28 |
223.567610 |
208.968190 |
-141.936379 |
6.731998e-22 |
|
|
|
| XEC.9 |
305 |
24 |
222.145129 |
212.116921 |
-148.233841 |
1.563148e-20 |
|
|
|
| XEC.8 |
592 |
28 |
219.655610 |
205.052805 |
-134.105610 |
1.342397e-23 |
|
|
|
| XEC.18 |
165 |
28 |
219.150953 |
204.551533 |
-133.103065 |
8.101443e-24 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 915_A|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6638_C|T, 7842_A|G, 7852_T|C, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11200_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16308_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22594_C|T, 22629_A|C, 22674_C|T,
22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A,
22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25613_C|T, 26060_C|T, 26093_A|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A,
28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/VT-25-003503-WGS-01/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.33 + XEC.2 | BC BR: 14-15 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-14,16-143 | Gap history (edge excluded): 14-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.90e-01 | |
| Rec. model vs L1: 4.89e-32 | Rec. model vs L2: 3.98e-24 | |
| Flags: Model_1BP_Best | | |
XEC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.33 |
169 |
14 |
17.783166 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
14 |
17.681102 |
17.681102 |
-3.362204 |
9.003245e-01 |
* |
* |
|
| XEC.16 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.4.3 |
10 |
12 |
15.079158 |
-7.384864 |
46.769728 |
1.171677e-11 |
|
|
|
| XEC.32 |
42 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.17 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.22 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.18.3 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.24 |
11 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.25 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
267.271358 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
27 |
241.392023 |
226.343204 |
-176.686408 |
3.710592e-14 |
|
|
|
| XEC.29 |
135 |
16 |
238.231668 |
228.231668 |
-180.463337 |
2.443927e-13 |
|
* |
|
| XEC.30 |
135 |
27 |
231.322752 |
216.266498 |
-156.532997 |
1.555087e-18 |
|
|
|
| XEC.25 |
13 |
27 |
229.899943 |
208.389194 |
-140.778389 |
5.911337e-22 |
|
|
|
| XEC.2.1 |
265 |
27 |
226.378931 |
201.639197 |
-127.278394 |
6.921464e-25 |
|
|
|
| XEC.5 |
126 |
27 |
223.567610 |
208.518791 |
-141.037583 |
6.731998e-22 |
|
|
|
| XEC.9 |
305 |
23 |
222.145129 |
211.667522 |
-147.335045 |
1.570984e-20 |
|
|
|
| XEC.8 |
592 |
27 |
219.655610 |
204.603407 |
-133.206814 |
1.342397e-23 |
|
|
|
| XEC.18 |
165 |
27 |
219.150953 |
204.102134 |
-132.204269 |
8.101443e-24 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 915_A|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6638_C|T, 7842_A|G, 7852_T|C, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11200_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16308_C|T,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22594_C|T, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25613_C|T, 26060_C|T, 26093_A|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/VT-25-003998-WGS-01/2025
| Target: 5350 samples | Number of changes: 143 | |
| BC: XEC.22 + XEC.2 | BC BR: 12-13 | BC BR coord: 6183 - 6184 |
| Direction L1: << | Initial region span: 1-12,15-143 | Gap history (edge excluded): 12-15 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.30e-01 | |
| Rec. model vs L1: 2.60e-51 | Rec. model vs L2: 1.05e-17 | |
| Flags: Model_1BP_Best | | |
XEC.22 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.22 |
23 |
12 |
15.079158 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.16 |
23 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.4.3 |
10 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.32 |
42 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.17 |
13 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.18.3 |
13 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.25 |
13 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.24 |
11 |
12 |
15.079158 |
15.079158 |
-6.158317 |
1.000000 |
* |
* |
|
| XEC.4.1 |
68 |
12 |
15.049528 |
15.049528 |
-6.099057 |
0.970446 |
* |
* |
|
| XEC.13 |
30 |
12 |
15.045257 |
15.045257 |
-6.090514 |
0.965605 |
* |
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
15 |
267.720756 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
27 |
241.392023 |
213.189659 |
-142.379318 |
3.692085e-14 |
|
|
|
| XEC.29 |
135 |
15 |
238.681067 |
206.515046 |
-129.030091 |
4.659679e-17 |
|
* |
|
| XEC.30 |
135 |
27 |
231.322752 |
203.112954 |
-122.225907 |
1.555087e-18 |
|
|
|
| XEC.25 |
13 |
27 |
229.899943 |
195.235649 |
-106.471299 |
5.881854e-22 |
|
|
|
| XEC.2.1 |
265 |
27 |
226.378931 |
188.478091 |
-92.956182 |
6.852594e-25 |
|
|
|
| XEC.5 |
126 |
27 |
223.567610 |
195.365246 |
-106.730493 |
6.698422e-22 |
|
|
|
| XEC.9 |
305 |
23 |
222.145129 |
192.431162 |
-100.862325 |
3.558920e-23 |
|
|
|
| XEC.8 |
592 |
27 |
219.655610 |
191.451553 |
-98.903105 |
1.335702e-23 |
|
|
|
| XEC.18 |
165 |
27 |
219.150953 |
190.954669 |
-97.909337 |
8.142052e-24 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 915_A|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6638_C|T, 7852_T|C, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11200_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16308_C|T,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22594_C|T, 22629_A|C, 22674_C|T, 22679_T|C,
22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A,
22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G,
23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25613_C|T, 26060_C|T, 26093_A|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): USA/CA-LACPHL-AY11147/2025
| Target: 5350 samples | Number of changes: 145 | |
| BC: XEC.33 + XEC.2 | BC BR: 14-15 | BC BR coord: 7842 - 7843 |
| Direction L1: << | Initial region span: 1-14,16-145 | Gap history (edge excluded): 14-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.90e-01 | |
| Rec. model vs L1: 5.46e-32 | Rec. model vs L2: 3.98e-24 | |
| Flags: Model_1BP_Best | | |
XEC.33 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.33 |
169 |
14 |
17.783166 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
14 |
17.681102 |
17.681102 |
-3.362204 |
9.003245e-01 |
* |
* |
|
| XEC.16 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.4.3 |
10 |
12 |
15.079158 |
-7.384864 |
46.769728 |
1.171677e-11 |
|
|
|
| XEC.32 |
42 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.17 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.22 |
23 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.18.3 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.24 |
11 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| XEC.25 |
13 |
12 |
15.079158 |
8.682101 |
14.635797 |
1.111089e-04 |
* |
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
16 |
271.351893 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.14 |
193 |
28 |
245.024085 |
230.424664 |
-184.849328 |
3.710592e-14 |
|
|
|
| XEC.29 |
135 |
16 |
242.299684 |
232.299684 |
-188.599368 |
2.419610e-13 |
|
* |
|
| XEC.25 |
13 |
28 |
237.617708 |
216.556357 |
-157.112714 |
3.513813e-20 |
|
|
|
| XEC.30 |
135 |
28 |
234.867262 |
220.260406 |
-164.520813 |
1.428367e-18 |
|
|
|
| XEC.2.1 |
265 |
28 |
229.985151 |
205.687253 |
-135.374506 |
6.683403e-25 |
|
|
|
| XEC.5 |
126 |
28 |
227.124600 |
212.525180 |
-149.050360 |
6.245568e-22 |
|
|
|
| XEC.18 |
165 |
28 |
226.505286 |
211.905866 |
-147.811731 |
3.359768e-22 |
|
|
|
| XEC.9 |
305 |
24 |
225.734380 |
215.706172 |
-155.412344 |
1.501856e-20 |
|
|
|
| XEC.39 |
155 |
5 |
223.777073 |
209.859526 |
-143.719052 |
4.346875e-23 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 915_A|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6638_C|T, 7842_A|G, 7852_T|C, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10273_T|C, 10447_G|A, 10449_C|A, 11042_G|T, 11200_C|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16308_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22594_C|T, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25613_C|T, 26060_C|T,
26093_A|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-0398E8C9-B516-48A2-86FD-3E54BF5C21F7
| Target: 5350 samples | Number of changes: 144 | |
| BC: KP.3.1.1 + XEC.9 | BC BR: 17-18 | BC BR coord: 7090 - 7091 |
| Direction L1: << | Initial region span: 1-17,18-144 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.62e-76 | Rec. model vs L2: 3.24e-24 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
17 |
4.454387 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.5.1.23 |
4202 |
4 |
3.636291 |
-62.310012 |
188.620023 |
1.010018e-29 |
|
|
|
| BA.5 |
6418 |
4 |
3.241758 |
-52.349998 |
168.699995 |
2.137479e-25 |
|
|
|
| BF.10 |
8612 |
4 |
3.031054 |
-75.376164 |
214.752327 |
2.139299e-35 |
|
|
|
| AY.4.2.2 |
19573 |
3 |
3.012210 |
-92.753561 |
249.507121 |
6.056663e-43 |
|
|
|
| BQ.1.1 |
36940 |
4 |
2.419308 |
-50.695834 |
165.391668 |
1.118560e-24 |
|
|
|
| XBB.1.16.6 |
4784 |
4 |
2.033307 |
-65.997527 |
195.995054 |
2.522216e-31 |
|
|
|
| BA.5.1 |
53705 |
4 |
1.871199 |
-44.187545 |
152.375091 |
7.477302e-22 |
|
|
|
| BA.2 |
443141 |
4 |
1.075408 |
-39.273974 |
142.547949 |
1.019301e-19 |
|
|
|
| P.1 |
10221 |
3 |
1.032244 |
-128.975452 |
321.950905 |
1.127424e-58 |
|
|
|
| |||||
XEC.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.9 |
305 |
18 |
277.842271 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.13 |
30 |
14 |
273.572892 |
262.580198 |
-263.160397 |
2.358665e-07 |
|
|
|
| XEC.2 |
921 |
17 |
269.368766 |
265.772089 |
-269.544179 |
5.728826e-06 |
|
* |
|
| XEC.16 |
23 |
17 |
266.523748 |
262.913957 |
-263.827913 |
3.297273e-07 |
|
* |
|
| XEC.31 |
66 |
17 |
262.279959 |
258.670168 |
-255.340337 |
4.726882e-09 |
|
* |
|
| XEC.28 |
39 |
17 |
261.637429 |
258.027638 |
-254.055277 |
2.492449e-09 |
|
* |
|
| XEC.19 |
59 |
17 |
261.386508 |
257.776717 |
-253.553434 |
1.931440e-09 |
|
* |
|
| XEC.14 |
193 |
17 |
261.348784 |
257.738993 |
-253.477985 |
1.865009e-09 |
|
* |
|
| XEC.17 |
13 |
17 |
260.351159 |
256.741368 |
-251.482737 |
6.860984e-10 |
|
* |
|
| XEC.8 |
592 |
17 |
260.218741 |
256.608950 |
-251.217899 |
6.024599e-10 |
|
* |
|
|
Target sequence
, 241_C|T, 379_C|T, 509_G|A, 670_T|G, 897_C|A, 2030_G|A, 2060_G|A, 2790_C|T, 3037_C|T, 3177_C|T, 3431_G|T, 3565_T|C, 3736_C|T, 4184_G|A, 4321_C|T, 5184_C|A, 6183_A|G, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13372_C|T, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21595_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-336E7E7C-A753-4F02-8767-9C96D4FFF043
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.2.3.13 + XEC.14 | BC BR: 5-6 | BC BR coord: 1297 - 1298 |
| Direction L1: << | Initial region span: 1-5,9-145 | Gap history (edge excluded): 5-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.57e-156 | Rec. model vs L2: 1.49e-23 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.3.13 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.13 |
25 |
5 |
11.399879 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4.3 |
10 |
4 |
10.581513 |
0.581513 |
8.836974 |
0.000020 |
* |
* |
|
| KP.3.3.10 |
55 |
4 |
9.569912 |
-0.430088 |
10.860176 |
0.000007 |
|
* |
|
| JN.1.34 |
83 |
4 |
8.927300 |
-1.072700 |
12.145400 |
0.000004 |
|
* |
|
| KS.2 |
18 |
4 |
8.837955 |
-1.162045 |
12.324089 |
0.000004 |
|
* |
|
| MC.10 |
221 |
4 |
8.648716 |
-1.351284 |
12.702569 |
0.000003 |
|
* |
|
| JN.1.40 |
26 |
4 |
8.488168 |
-1.511832 |
13.023663 |
0.000002 |
|
* |
|
| LZ.1 |
28 |
4 |
8.453281 |
-1.546719 |
13.093438 |
0.000002 |
|
* |
|
| LF.7.1 |
165 |
5 |
8.288343 |
8.288343 |
-6.576686 |
0.044601 |
* |
* |
|
| NY.7 |
36 |
4 |
8.201967 |
-1.798033 |
13.596067 |
0.000002 |
|
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
9 |
269.682855 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
8 |
256.626219 |
236.626219 |
-173.252439 |
5.135572e-14 |
|
* |
|
| XEC.2.2 |
273 |
9 |
249.494751 |
219.494751 |
-138.989503 |
1.866914e-21 |
|
* |
|
| XEC.4 |
192 |
9 |
248.969849 |
235.256251 |
-170.512501 |
1.304985e-14 |
|
* |
|
| KP.3.3 |
1715 |
9 |
248.613194 |
230.342798 |
-160.685596 |
9.620984e-17 |
|
* |
|
| XEC.28 |
39 |
9 |
247.386239 |
233.672640 |
-167.345279 |
2.687943e-15 |
|
* |
|
| XEC.8 |
592 |
9 |
245.830690 |
232.105196 |
-164.210393 |
5.592137e-16 |
|
* |
|
| XEC.29 |
135 |
9 |
241.851981 |
228.138382 |
-156.276764 |
1.060719e-17 |
|
* |
|
| XEC.17 |
13 |
9 |
240.815307 |
227.101708 |
-154.203415 |
3.749159e-18 |
|
* |
|
| MC.24.1 |
25 |
9 |
237.862520 |
223.494994 |
-146.989989 |
1.019301e-19 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1150_C|T, 1288_C|T, 1973_C|T, 2060_G|A, 2650_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10156_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11752_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13554_C|T, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20544_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23609_C|T, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-3F05C326-1A96-41EB-A33D-E8C815FBAD27
| Target: 5350 samples | Number of changes: 148 | |
| BC: JN.1.7.5 + XEC.2 | BC BR: 16-17 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-7,18-148 | Gap history (edge excluded): 7-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.93e-121 | Rec. model vs L2: 2.93e-39 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.7.5 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.7.5 |
427 |
7 |
28.134461 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.2 |
574 |
5 |
18.992844 |
-17.389622 |
70.779244 |
2.307954e-16 |
|
|
|
| BA.4.1 |
18821 |
6 |
8.227998 |
-18.361891 |
72.723781 |
8.749063e-17 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
18 |
237.681481 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
20 |
225.436821 |
209.046612 |
-130.093225 |
8.070907e-09 |
|
|
|
| XEC.14 |
193 |
24 |
223.343498 |
205.993885 |
-123.987770 |
3.822295e-10 |
|
|
|
| XEC.9 |
305 |
24 |
222.826061 |
209.459085 |
-130.918170 |
1.222235e-08 |
|
|
|
| XEC.4 |
192 |
24 |
217.444787 |
209.930296 |
-131.860591 |
1.955568e-08 |
|
|
|
| XEC.33 |
169 |
9 |
216.080219 |
197.721356 |
-107.442712 |
9.739515e-14 |
|
|
|
| XEC.30 |
135 |
20 |
213.698307 |
197.308098 |
-106.616197 |
6.463631e-14 |
|
|
|
| XEC.31 |
66 |
24 |
210.925853 |
193.576240 |
-99.152479 |
1.543074e-15 |
|
|
|
| XEK.1 |
88 |
24 |
210.797798 |
185.434540 |
-82.869081 |
4.500177e-19 |
|
|
|
| XEC.29 |
135 |
24 |
210.500397 |
179.153884 |
-70.307768 |
8.430635e-22 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 688_.|CAT, 689_T|A, 692_T|A, 694_T|G, 897_C|A, 958_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4276_C|T, 4321_C|T, 5512_C|T, 6183_A|G, 6543_C|T,
7842_A|G, 8293_C|T, 8393_G|A, 9298_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18891_G|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23222_G|A,
23271_C|T, 23403_A|G, 23423_23428, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26159_26161, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27223_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
27970_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-4CC641EA-D8D1-4993-9310-51B7F11A72A7
| Target: 5350 samples | Number of changes: 151 | |
| BC: XEC.14 + JG.2 + XEC.14 | BC BR: 9-10, 14-15 | BC BR coord: 3566 - 3567, 5647 - 5648 |
| Direction L1: << | Initial region span: 1-9,10-14,19-151 | Gap history (edge excluded): 9-19 -> 14-19 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.91e-11 | |
| Rec. model vs L1: 4.50e-21 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEC.14 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
9 |
1.437887 |
None |
None |
None |
* |
* |
* |
| |||||
JG.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JG.2 |
72 |
14 |
13.822197 |
NaN |
NaN |
NaN |
* |
* |
* |
| DN.1.1 |
313 |
13 |
7.057412 |
-2.942588 |
29.885177 |
5.236644e-08 |
|
* |
|
| XBB.1 |
3166 |
13 |
6.520895 |
5.880687 |
12.238625 |
3.562065e-04 |
* |
* |
|
| PQ.14 |
26 |
10 |
6.443512 |
-25.783951 |
75.567901 |
6.306190e-18 |
|
|
|
| KP.2.25.2 |
16 |
10 |
6.443512 |
-11.409630 |
46.819261 |
1.103444e-11 |
|
|
|
| XBB.1.16.1 |
1702 |
13 |
5.865231 |
-4.134769 |
32.269538 |
1.593098e-08 |
|
* |
|
| HV.1 |
11771 |
13 |
5.520429 |
5.358811 |
13.282378 |
2.117721e-04 |
* |
* |
|
| BN.2.1 |
21 |
10 |
5.344899 |
-33.085466 |
90.170932 |
4.260076e-21 |
|
|
|
| XBB.1.5.68 |
27 |
10 |
5.344899 |
-12.508243 |
49.016485 |
3.673045e-12 |
|
|
|
| B.1.523 |
109 |
10 |
5.335683 |
-34.834734 |
93.669467 |
7.402902e-22 |
|
|
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
19 |
223.817661 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
19 |
221.579348 |
204.827434 |
-95.654869 |
1.949856e-03 |
* |
* |
|
| XEC.2 |
921 |
19 |
220.572159 |
197.068229 |
-80.136457 |
8.356968e-07 |
|
* |
|
| XEC.18 |
165 |
18 |
217.457353 |
210.353067 |
-106.706134 |
4.916442e-01 |
* |
* |
|
| XEC.29 |
135 |
18 |
210.590163 |
189.510638 |
-65.021276 |
4.352938e-10 |
|
* |
|
| XEC.9 |
305 |
19 |
210.340949 |
198.161717 |
-82.323433 |
2.485591e-06 |
|
* |
|
| XEC.8 |
592 |
19 |
210.278391 |
193.090424 |
-72.180848 |
1.561553e-08 |
|
* |
|
| XEC.13 |
30 |
19 |
206.824660 |
189.723059 |
-65.446118 |
5.397041e-10 |
|
* |
|
| XEC.2.2 |
273 |
25 |
206.133276 |
166.186123 |
-18.372247 |
3.227481e-20 |
|
|
|
| XEC.4 |
192 |
19 |
205.048200 |
187.922193 |
-61.844386 |
8.876755e-11 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1848_C|T, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3619_C|T, 3644_G|A, 4184_G|A, 4321_C|T, 5646_C|T, 5806_C|T, 6183_A|G, 6478_T|C, 7420_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9445_T|C, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
13585_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21812_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23644_C|A, 23854_C|A, 23948_G|T, 24367_A|G, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T,
25006_C|T, 25207_C|T, 25584_C|T, 25603_C|A, 25703_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26645_C|T, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-5514ABAB-1EBE-40B9-AD35-BB8653DA8DC4
| Target: 5350 samples | Number of changes: 142 | |
| BC: XEC.2 + XEC.1 + XEC.2 | BC BR: 4-5, 6-7 | BC BR coord: 1153 - 1154, 2060 - 2061 |
| Direction L1: << | Initial region span: 1-4,5-6,7-142 | Gap history (edge excluded): 4-7 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 1.76e-05 | |
| Rec. model vs L1: 6.09e-10 | Rec. model vs L2: 5.45e-37 | |
| Flags: Model_2BP_Best | | |
XEC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
4 |
4.922764 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.1 |
99 |
6 |
8.426421 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.5 |
126 |
6 |
7.502265 |
7.502265 |
-5.004529 |
3.965314e-01 |
* |
* |
|
| XEC.30 |
135 |
6 |
7.403194 |
7.403194 |
-4.806389 |
3.605949e-01 |
* |
* |
|
| XEC.4 |
192 |
6 |
7.081051 |
7.081051 |
-4.162102 |
2.605397e-01 |
* |
* |
|
| HC.1 |
10 |
5 |
6.052145 |
-3.947855 |
17.895709 |
4.222851e-06 |
|
* |
|
| HC.2 |
19 |
5 |
6.052145 |
-13.664830 |
37.329660 |
2.549382e-10 |
|
* |
|
| B.1.558 |
181 |
5 |
6.052145 |
-3.947855 |
17.895709 |
4.222851e-06 |
|
* |
|
| B.1.385 |
53 |
5 |
6.052145 |
-14.191177 |
38.382354 |
1.508101e-10 |
|
* |
|
| BF.7.5.1 |
141 |
5 |
6.045028 |
-6.944386 |
23.888773 |
2.112972e-07 |
|
* |
|
| B.1.1.251 |
36 |
5 |
6.023975 |
-3.976025 |
17.952051 |
4.118589e-06 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
7 |
276.776131 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
8 |
268.793520 |
263.786093 |
-227.572186 |
1.658114e-08 |
|
* |
|
| XEC.39 |
155 |
8 |
268.305693 |
253.011567 |
-206.023135 |
3.468098e-13 |
|
* |
|
| XEC.28 |
39 |
8 |
267.386239 |
252.026439 |
-204.052877 |
1.295124e-13 |
|
* |
|
| XEC.33 |
169 |
8 |
266.989165 |
251.678096 |
-203.356193 |
9.172330e-14 |
|
* |
|
| XEC.8 |
592 |
8 |
264.881989 |
249.531997 |
-199.063994 |
1.068431e-14 |
|
* |
|
| XEC.14 |
193 |
8 |
261.797265 |
246.489946 |
-192.979892 |
5.110828e-16 |
|
* |
|
| XEC.17 |
13 |
8 |
260.815307 |
245.534126 |
-191.068251 |
1.966709e-16 |
|
* |
|
| MC.24.1 |
25 |
8 |
257.862520 |
242.540517 |
-185.081034 |
9.840748e-18 |
|
* |
|
| XEC.15 |
127 |
8 |
257.700818 |
242.403764 |
-184.807527 |
8.598018e-18 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1150_C|T, 1288_C|T, 2060_G|A, 2650_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10156_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20544_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A,
28883_G|C, 28884_G|C, 28896_C|T, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-5D565D61-4013-4E04-BC27-A4C69F4AEB42
| Target: 5350 samples | Number of changes: 148 | |
| BC: XEC.14 + JG.2 + XEC.14 | BC BR: 8-9, 13-14 | BC BR coord: 3566 - 3567, 5647 - 5648 |
| Direction L1: << | Initial region span: 1-8,9-13,17-148 | Gap history (edge excluded): 8-17 -> 13-17 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.25e-14 | |
| Rec. model vs L1: 4.50e-21 | Rec. model vs L2: 0.00e+00 | |
| Flags: Model_2BP_Best | | |
XEC.14 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
8 |
11.437887 |
None |
None |
None |
* |
* |
* |
| |||||
JG.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JG.2 |
72 |
13 |
13.822197 |
NaN |
NaN |
NaN |
* |
* |
* |
| DN.1.1 |
313 |
12 |
7.057412 |
-2.942588 |
27.885177 |
5.236644e-08 |
|
* |
|
| XBB.1 |
3166 |
12 |
6.520895 |
5.880687 |
10.238625 |
3.562065e-04 |
* |
* |
|
| KP.2.25.2 |
16 |
9 |
6.443512 |
-11.409630 |
44.819261 |
1.103444e-11 |
|
|
|
| PQ.14 |
26 |
9 |
6.443512 |
-25.783951 |
73.567901 |
6.306190e-18 |
|
|
|
| XBB.1.16.1 |
1702 |
12 |
5.865231 |
-4.134769 |
30.269538 |
1.593098e-08 |
|
* |
|
| KP.3.1.1 |
12013 |
14 |
5.674926 |
2.067218 |
17.865564 |
7.849977e-06 |
|
* |
|
| HV.1 |
11771 |
12 |
5.520429 |
5.358811 |
11.282378 |
2.117721e-04 |
* |
* |
|
| BN.2.1 |
21 |
9 |
5.344899 |
-33.085466 |
88.170932 |
4.260076e-21 |
|
|
|
| XBB.1.5.68 |
27 |
9 |
5.344899 |
-12.508243 |
47.016485 |
3.673045e-12 |
|
|
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
17 |
233.817661 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
17 |
231.579348 |
225.503108 |
-143.006215 |
3.473526e-02 |
* |
* |
|
| XEC.29 |
135 |
16 |
220.590163 |
219.510638 |
-131.021276 |
8.653168e-05 |
* |
* |
|
| XEC.9 |
305 |
17 |
220.340949 |
217.110534 |
-126.221067 |
7.849977e-06 |
|
* |
|
| XEC.8 |
592 |
17 |
220.278391 |
223.090424 |
-138.180848 |
3.104198e-03 |
* |
* |
|
| XEC.2 |
921 |
17 |
218.963593 |
205.513627 |
-103.027254 |
7.231424e-11 |
|
* |
|
| XEC.2.2 |
273 |
23 |
216.133276 |
196.186123 |
-84.372247 |
6.415881e-15 |
|
|
|
| XEC.4 |
192 |
17 |
215.048200 |
217.922193 |
-127.844386 |
1.764603e-05 |
* |
* |
|
| XEC.18 |
165 |
16 |
214.822419 |
227.718133 |
-147.436266 |
3.182239e-01 |
* |
* |
|
| XEC.40 |
52 |
17 |
214.499918 |
217.393383 |
-126.786765 |
1.043860e-05 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3619_C|T, 3644_G|A, 4184_G|A, 4321_C|T, 5646_C|T, 6183_A|G, 6478_T|C, 7420_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9445_T|C, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21812_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23644_C|A, 23854_C|A, 23948_G|T, 24367_A|G, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
25603_C|A, 25703_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26645_C|T, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-7035C5F5-2143-4E09-9861-E8C8C4DF8C86
| Target: 5350 samples | Number of changes: 146 | |
| BC: KP.2.3.13 + XEC.14 | BC BR: 5-6 | BC BR coord: 1297 - 1298 |
| Direction L1: << | Initial region span: 1-5,9-146 | Gap history (edge excluded): 5-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.57e-156 | Rec. model vs L2: 1.49e-23 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.3.13 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.13 |
25 |
5 |
11.399879 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4.3 |
10 |
4 |
10.581513 |
0.581513 |
8.836974 |
0.000020 |
* |
* |
|
| KP.3.3.10 |
55 |
4 |
9.569912 |
-0.430088 |
10.860176 |
0.000007 |
|
* |
|
| JN.1.34 |
83 |
4 |
8.927300 |
-1.072700 |
12.145400 |
0.000004 |
|
* |
|
| KS.2 |
18 |
4 |
8.837955 |
-1.162045 |
12.324089 |
0.000004 |
|
* |
|
| MC.10 |
221 |
4 |
8.648716 |
-1.351284 |
12.702569 |
0.000003 |
|
* |
|
| JN.1.40 |
26 |
4 |
8.488168 |
-1.511832 |
13.023663 |
0.000002 |
|
* |
|
| LZ.1 |
28 |
4 |
8.453281 |
-1.546719 |
13.093438 |
0.000002 |
|
* |
|
| LF.7.1 |
165 |
5 |
8.288343 |
8.288343 |
-6.576686 |
0.044601 |
* |
* |
|
| NY.7 |
36 |
4 |
8.201967 |
-1.798033 |
13.596067 |
0.000002 |
|
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
9 |
259.682855 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
8 |
246.626219 |
226.626219 |
-151.252439 |
5.135572e-14 |
|
* |
|
| XEC.2.2 |
273 |
9 |
239.494751 |
209.494751 |
-116.989503 |
1.866914e-21 |
|
* |
|
| XEC.4 |
192 |
9 |
238.969849 |
225.256251 |
-148.512501 |
1.304985e-14 |
|
* |
|
| KP.3.3 |
1715 |
9 |
238.613194 |
220.342798 |
-138.685596 |
9.620984e-17 |
|
* |
|
| XEC.28 |
39 |
9 |
237.386239 |
223.672640 |
-145.345279 |
2.687943e-15 |
|
* |
|
| XEC.8 |
592 |
9 |
235.830690 |
222.105196 |
-142.210393 |
5.592137e-16 |
|
* |
|
| XEC.29 |
135 |
9 |
231.851981 |
218.138382 |
-134.276764 |
1.060719e-17 |
|
* |
|
| XEC.17 |
13 |
9 |
230.815307 |
217.101708 |
-132.203415 |
3.749159e-18 |
|
* |
|
| MC.24.1 |
25 |
9 |
227.862520 |
213.494994 |
-124.989989 |
1.019301e-19 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1150_C|T, 1288_C|T, 1973_C|T, 2060_G|A, 2650_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10156_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11752_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13554_C|T, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20544_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23609_C|T, 23854_C|A, 23948_G|T, 24353_A|G, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-BA12F5F9-8A6C-421B-9AED-9577268198D2
| Target: 5350 samples | Number of changes: 147 | |
| BC: NY.13 + XEC.2 | BC BR: 6-7 | BC BR coord: 2060 - 2061 |
| Direction L1: << | Initial region span: 1-5,10-147 | Gap history (edge excluded): 5-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.09e-149 | Rec. model vs L2: 1.10e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
NY.13 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NY.13 |
463 |
5 |
10.744395 |
NaN |
NaN |
NaN |
* |
* |
* |
| JV.2 |
16 |
3 |
8.889772 |
-34.957105 |
93.914210 |
8.555135e-18 |
|
|
|
| BN.1 |
1200 |
3 |
7.896973 |
-22.103027 |
68.206055 |
3.257699e-12 |
|
|
|
| XEC.6 |
45 |
8 |
6.741873 |
5.660779 |
12.678441 |
3.724751e+00 |
* |
|
|
| BA.4.2 |
1792 |
3 |
4.163430 |
-29.734487 |
83.468974 |
1.582137e-15 |
|
|
|
| BF.7 |
11554 |
3 |
2.993263 |
-20.472019 |
64.944038 |
1.671023e-11 |
|
|
|
| JN.1.4 |
8971 |
3 |
2.546824 |
-10.304045 |
44.608090 |
4.340961e-07 |
|
|
|
| XFH.1 |
10 |
5 |
2.405006 |
-7.594994 |
39.189988 |
6.524149e-06 |
|
* |
|
| BA.4.1 |
18821 |
3 |
1.813614 |
-32.083089 |
88.166179 |
1.508871e-16 |
|
|
|
| BA.5.2.1 |
73935 |
3 |
1.543024 |
-18.419704 |
60.839408 |
1.298034e-10 |
|
|
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
10 |
245.529961 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
6 |
230.169448 |
228.439843 |
-154.879686 |
2.830180e-04 |
* |
|
|
| XEC.9 |
305 |
6 |
221.357549 |
215.071148 |
-128.142295 |
4.418724e-10 |
|
|
|
| XEC.8 |
592 |
6 |
220.878384 |
214.603878 |
-127.207755 |
2.775556e-10 |
|
|
|
| XEC.2.1 |
265 |
27 |
220.181434 |
202.118986 |
-102.237973 |
1.049986e-15 |
|
|
|
| MC.24.1 |
25 |
15 |
217.769997 |
208.234144 |
-114.468289 |
4.752193e-13 |
|
|
|
| XEC.32 |
42 |
15 |
215.862282 |
206.326429 |
-110.652859 |
7.037066e-14 |
|
|
|
| XEC.33 |
169 |
15 |
214.739782 |
205.167781 |
-108.335561 |
2.217081e-14 |
|
|
|
| XEC.2.2 |
273 |
10 |
214.497112 |
205.578206 |
-109.156412 |
3.340737e-14 |
|
* |
|
| XEC.39 |
155 |
15 |
214.238891 |
204.670248 |
-107.340496 |
1.344727e-14 |
|
|
|
|
Target sequence
, 241_C|T, 310_A|G, 670_T|G, 897_C|A, 949_A|G, 2060_G|A, 2790_C|T, 3037_C|T, 3411_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5144_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10567_T|C, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22181_C|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24023_C|T, 24378_C|T, 24424_A|T, 24469_T|A, 24784_C|T, 24863_C|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25584_C|T, 25931_C|A, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-C9583D6A-0A9C-425E-AAB8-A1943D5F1208
| Target: 5350 samples | Number of changes: 140 | |
| BC: XEC.18 + XEK.1 | BC BR: 129-130 | BC BR coord: 28290 - 28291 |
| Direction L1: >> | Initial region span: 1-129,132-140 | Gap history (edge excluded): 129-132 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 2.42e-02 | |
| Rec. model vs L1: 2.87e-09 | Rec. model vs L2: 1.98e-54 | |
| Flags: Model_1BP_Best | | |
XEC.18 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
129 |
270.753531 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
129 |
264.623005 |
264.623005 |
-253.246010 |
2.176581e-03 |
* |
* |
|
| XEC.6 |
45 |
129 |
263.978329 |
263.978329 |
-251.956657 |
1.141970e-03 |
* |
* |
|
| XEC.33 |
169 |
129 |
261.535429 |
261.535429 |
-247.070857 |
9.903869e-05 |
* |
* |
|
| XEC.8 |
592 |
129 |
259.416998 |
259.416998 |
-242.833996 |
1.188777e-05 |
* |
* |
|
| XEC.24 |
11 |
129 |
259.075313 |
259.075313 |
-242.150626 |
8.461365e-06 |
|
* |
|
| XEC.36 |
30 |
129 |
258.291226 |
258.291226 |
-240.582452 |
3.859395e-06 |
|
* |
|
| XEC.17 |
13 |
129 |
257.101994 |
257.101994 |
-238.203988 |
1.174110e-06 |
|
* |
|
| XEC.15 |
127 |
129 |
256.804479 |
256.804479 |
-237.608957 |
8.741621e-07 |
|
* |
|
| XEC.2 |
921 |
129 |
255.308199 |
255.308199 |
-234.616398 |
1.960296e-07 |
|
* |
|
| |||||
XEK.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEK.1 |
88 |
132 |
16.314988 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
132 |
15.867486 |
-4.892340 |
33.784679 |
6.408243e-01 |
* |
* |
|
| KP.3.3.4 |
292 |
132 |
14.421916 |
-6.337910 |
36.675820 |
1.503183e-01 |
* |
* |
|
| KP.3.3 |
1715 |
132 |
14.148719 |
-6.611107 |
37.222213 |
1.147499e-01 |
* |
* |
|
| KP.1.1.2 |
12 |
137 |
10.631340 |
-17.877607 |
59.755215 |
1.463031e-06 |
|
|
|
| NY.1 |
25 |
137 |
9.810029 |
-18.516597 |
61.033194 |
7.753122e-07 |
|
|
|
| JN.1.11.1 |
226 |
132 |
9.410985 |
-11.348840 |
46.697680 |
1.002759e-03 |
* |
* |
|
| MU.2.1 |
37 |
137 |
9.348718 |
-18.977908 |
61.955816 |
4.870008e-07 |
|
|
|
| JN.1.22 |
516 |
137 |
9.181984 |
-19.257350 |
62.514701 |
3.699123e-07 |
|
|
|
| KP.3 |
769 |
132 |
8.888332 |
-11.871494 |
47.742987 |
5.961609e-04 |
* |
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T,
10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17304_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T,
18894_C|T, 19716_C|T, 19891_G|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25897_A|G, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28303_28311, 28314_G|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C,
28905_C|T, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-D4306C2B-0C5B-4513-BF63-848147D0A912
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.32 + KP.3.3.4 | BC BR: 136-137 | BC BR coord: 28361 - 28362 |
| Direction L1: >> | Initial region span: 1-136,139-146 | Gap history (edge excluded): 136-139 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.05e-12 | Rec. model vs L2: 3.23e-71 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.32 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
136 |
247.693106 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
137 |
240.633597 |
240.169535 |
-190.339069 |
5.394287e-04 |
* |
* |
|
| XEC.4 |
192 |
143 |
240.615726 |
228.122891 |
-166.245783 |
3.168524e-09 |
|
|
|
| XEC.8 |
592 |
136 |
237.364079 |
237.364079 |
-184.728157 |
3.263909e-05 |
* |
* |
|
| XEC.18 |
165 |
136 |
235.303136 |
235.303136 |
-180.606272 |
4.159981e-06 |
|
* |
|
| XEC.31 |
66 |
136 |
228.539778 |
228.539778 |
-167.079557 |
4.798320e-09 |
|
* |
|
| XEC.33 |
169 |
136 |
227.175551 |
227.175551 |
-164.351103 |
1.225398e-09 |
|
* |
|
| XEC.14 |
193 |
143 |
226.991046 |
225.558160 |
-161.116320 |
2.437203e-10 |
|
|
|
| XEC.3 |
29 |
136 |
225.214395 |
225.214395 |
-160.428790 |
1.726077e-10 |
|
* |
|
| XEC.24 |
11 |
136 |
221.567155 |
221.567155 |
-153.134310 |
4.486268e-12 |
|
* |
|
| |||||
KP.3.3.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3.4 |
292 |
139 |
14.531099 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
139 |
13.328665 |
-6.671335 |
35.342671 |
1.645304e-05 |
* |
* |
|
| JN.1.30 |
57 |
143 |
12.916045 |
-15.429459 |
52.858917 |
2.581230e-09 |
|
|
|
| JN.1.23 |
10 |
143 |
11.386342 |
-16.959161 |
55.918323 |
5.589283e-10 |
|
|
|
| KP.3.1.10 |
51 |
143 |
10.010592 |
-4.002922 |
30.005843 |
2.363965e-04 |
* |
|
|
| JN.1.4.7 |
159 |
143 |
8.813068 |
-19.532435 |
61.064870 |
4.277788e-11 |
|
|
|
| XEC.11.1.1 |
12 |
139 |
8.450744 |
-11.549256 |
45.098513 |
1.249940e-07 |
|
* |
|
| KP.1.1 |
593 |
143 |
8.437611 |
-9.428045 |
40.856089 |
1.041342e-06 |
|
|
|
| JN.2 |
574 |
143 |
8.231969 |
0.230623 |
21.538754 |
1.632594e-02 |
* |
|
|
| XBB.1.33 |
27 |
144 |
8.163116 |
-30.182387 |
82.364775 |
1.013872e-15 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 6664_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12412_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T, 18086_C|A, 18163_A|G,
18492_A|G, 18657_C|T, 18861_A|T, 18888_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22030_G|A, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23600_T|C, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370,
28657_C|T, 28708_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29137_C|T, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-336E7E7C-A753-4F02-8767-9C96D4FFF043
| Target: 5350 samples | Number of changes: 145 | |
| BC: KP.2.3.13 + XEC.14 | BC BR: 5-6 | BC BR coord: 1297 - 1298 |
| Direction L1: << | Initial region span: 1-5,9-145 | Gap history (edge excluded): 5-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.57e-156 | Rec. model vs L2: 1.49e-23 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.3.13 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.13 |
25 |
5 |
11.399879 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4.3 |
10 |
4 |
10.581513 |
0.581513 |
8.836974 |
0.000020 |
* |
* |
|
| KP.3.3.10 |
55 |
4 |
9.569912 |
-0.430088 |
10.860176 |
0.000007 |
|
* |
|
| JN.1.34 |
83 |
4 |
8.927300 |
-1.072700 |
12.145400 |
0.000004 |
|
* |
|
| KS.2 |
18 |
4 |
8.837955 |
-1.162045 |
12.324089 |
0.000004 |
|
* |
|
| MC.10 |
221 |
4 |
8.648716 |
-1.351284 |
12.702569 |
0.000003 |
|
* |
|
| JN.1.40 |
26 |
4 |
8.488168 |
-1.511832 |
13.023663 |
0.000002 |
|
* |
|
| LZ.1 |
28 |
4 |
8.453281 |
-1.546719 |
13.093438 |
0.000002 |
|
* |
|
| LF.7.1 |
165 |
5 |
8.288343 |
8.288343 |
-6.576686 |
0.044601 |
* |
* |
|
| NY.7 |
36 |
4 |
8.201967 |
-1.798033 |
13.596067 |
0.000002 |
|
* |
|
| |||||
XEC.14 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.14 |
193 |
9 |
269.682855 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
8 |
256.626219 |
236.626219 |
-173.252439 |
5.135572e-14 |
|
* |
|
| XEC.2.2 |
273 |
9 |
249.494751 |
219.494751 |
-138.989503 |
1.866914e-21 |
|
* |
|
| XEC.4 |
192 |
9 |
248.969849 |
235.256251 |
-170.512501 |
1.304985e-14 |
|
* |
|
| KP.3.3 |
1715 |
9 |
248.613194 |
230.342798 |
-160.685596 |
9.620984e-17 |
|
* |
|
| XEC.28 |
39 |
9 |
247.386239 |
233.672640 |
-167.345279 |
2.687943e-15 |
|
* |
|
| XEC.8 |
592 |
9 |
245.830690 |
232.105196 |
-164.210393 |
5.592137e-16 |
|
* |
|
| XEC.29 |
135 |
9 |
241.851981 |
228.138382 |
-156.276764 |
1.060719e-17 |
|
* |
|
| XEC.17 |
13 |
9 |
240.815307 |
227.101708 |
-154.203415 |
3.749159e-18 |
|
* |
|
| MC.24.1 |
25 |
9 |
237.862520 |
223.494994 |
-146.989989 |
1.019301e-19 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1150_C|T, 1288_C|T, 1973_C|T, 2060_G|A, 2650_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10156_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11752_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13554_C|T, 14408_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20544_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23609_C|T, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 72 (XEC): IGS-10285-CVDP-F81870C3-13A3-4CE6-8567-7BF50276D37D
| Target: 5350 samples | Number of changes: 146 | |
| BC: XEC.39 + XEC.2 | BC BR: 12-13 | BC BR coord: 4387 - 4388 |
| Direction L1: << | Initial region span: 1-8,13-146 | Gap history (edge excluded): 8-13 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.32e-01 | |
| Rec. model vs L1: 3.76e-31 | Rec. model vs L2: 3.57e-24 | |
| Flags: Model_1BP_Best | | |
XEC.39 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.39 |
155 |
8 |
18.622173 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.3 |
29 |
7 |
15.661018 |
1.434276 |
21.131448 |
0.000002 |
|
* |
|
| XEC.22 |
23 |
7 |
15.661018 |
1.469367 |
21.061265 |
0.000002 |
|
* |
|
| XEC.29 |
135 |
7 |
15.661018 |
1.447007 |
21.105987 |
0.000002 |
|
* |
|
| XEC.32 |
42 |
7 |
15.661018 |
1.469367 |
21.061265 |
0.000002 |
|
* |
|
| XEC.36 |
30 |
7 |
15.661018 |
1.435466 |
21.129068 |
0.000002 |
|
* |
|
| XEC.24 |
11 |
7 |
15.661018 |
1.469367 |
21.061265 |
0.000002 |
|
* |
|
| XEC.4.1.4 |
23 |
7 |
15.661018 |
1.469367 |
21.061265 |
0.000002 |
|
* |
|
| XEC.4.3 |
10 |
7 |
15.661018 |
1.469367 |
21.061265 |
0.000002 |
|
* |
|
| XEC.4.7 |
13 |
7 |
15.661018 |
1.207003 |
21.585994 |
0.000002 |
|
* |
|
| |||||
XEC.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.2 |
921 |
13 |
231.720443 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.9 |
305 |
1 |
215.469140 |
200.609909 |
-115.219817 |
3.083889e-14 |
|
|
|
| XEC.2.1 |
265 |
39 |
210.621889 |
193.991464 |
-101.982929 |
4.112152e-17 |
|
|
|
| XEC.8 |
592 |
10 |
208.733786 |
202.964998 |
-119.929996 |
3.249841e-13 |
|
|
|
| XEC.14 |
193 |
10 |
208.133859 |
202.341176 |
-118.682351 |
1.739515e-13 |
|
|
|
| XEC.33 |
169 |
39 |
202.459161 |
187.760543 |
-89.521085 |
8.098686e-20 |
|
|
|
| XEC.39 |
155 |
1 |
200.249560 |
185.851827 |
-85.703654 |
1.199257e-20 |
|
|
|
| XEC.31 |
66 |
39 |
199.956377 |
193.039581 |
-100.079161 |
1.590338e-17 |
|
|
|
| XEC.40 |
52 |
39 |
199.465110 |
186.222970 |
-86.445940 |
1.744908e-20 |
|
|
|
| XEC.29 |
135 |
39 |
198.105556 |
177.176990 |
-68.353981 |
2.048366e-24 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3511_C|T, 3535_C|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9220_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12525_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14206_C|T, 14408_C|T, 15714_C|T, 15756_T|A,
16293_C|T, 16326_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19545_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T,
26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26801_C|T, 26833_C|T, 26858_C|T, 26957_T|A, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28065_28119, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 78 (XFC): OZ288079
| Target: 72 samples | Number of changes: 143 | |
| BC: XFC.1 + JN.1.9 + XFC.1 | BC BR: 123-124, 140-141 | BC BR coord: 26872 - 26873, 29498 - 29499 |
| Direction L1: >> | Initial region span: 1-123,124-138,141-143 | Gap history (edge excluded): 123-141 -> 138-141 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 8.19e-03 | |
| Rec. model vs L1: 3.78e-25 | Rec. model vs L2: 4.97e-148 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
123 |
226.595979 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1 |
1124 |
133 |
180.106630 |
168.259560 |
-40.519120 |
4.116353e-29 |
|
|
|
| XFC.1.1.1 |
21 |
111 |
173.892135 |
179.881954 |
-63.763909 |
4.581572e-24 |
|
|
|
| LP.8.1.1 |
2345 |
133 |
167.966380 |
157.231562 |
-18.463125 |
6.671823e-34 |
|
|
|
| NY.7 |
36 |
111 |
153.828652 |
144.876281 |
6.247438 |
2.874327e-39 |
|
|
|
| NY.15 |
216 |
111 |
135.213296 |
128.662254 |
38.675493 |
2.608862e-46 |
|
|
|
| NY.12 |
62 |
111 |
128.271821 |
119.529942 |
56.940116 |
2.827109e-50 |
|
|
|
| NY.9 |
107 |
133 |
127.448928 |
116.332387 |
63.335226 |
1.152392e-51 |
|
|
|
| PR.2 |
20 |
111 |
126.547589 |
117.862869 |
60.274263 |
5.348626e-51 |
|
|
|
| NY.6 |
30 |
111 |
124.698817 |
115.813838 |
64.372325 |
6.885549e-52 |
|
|
|
| |||||
JN.1.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
138 |
21.191121 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.1 |
47 |
133 |
17.010073 |
-8.393355 |
56.786711 |
1.041697e-10 |
|
|
|
| JN.1 |
17255 |
140 |
16.555710 |
16.555710 |
6.888579 |
7.134913e+00 |
* |
|
|
| KP.2.3 |
4440 |
138 |
15.797610 |
-4.202390 |
48.404780 |
6.912047e-09 |
|
* |
|
| JN.1.4 |
8971 |
138 |
15.601325 |
-4.398675 |
48.797350 |
5.659105e-09 |
|
* |
|
| KP.3.2.3 |
759 |
133 |
15.452380 |
-10.046251 |
60.092501 |
2.000578e-11 |
|
|
|
| MC.30 |
104 |
133 |
15.421587 |
-10.084658 |
60.169316 |
1.922134e-11 |
|
|
|
| LP.8.1.4 |
191 |
133 |
14.888470 |
-10.573660 |
61.147320 |
1.177550e-11 |
|
|
|
| KP.3.3.1 |
211 |
132 |
14.633121 |
-20.508222 |
81.016445 |
5.705106e-16 |
|
|
|
| XEC.30 |
135 |
132 |
14.125068 |
-20.985133 |
81.970266 |
3.547920e-16 |
|
|
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
141 |
7.024671 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1683_T|C, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21595_C|T, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A,
22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G,
22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A,
23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T,
24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25227_C|T, 25584_C|T, 25695_T|C, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A,
26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A,
29146_A|T, 29494_G|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): OZ288142
| Target: 72 samples | Number of changes: 141 | |
| BC: XFC.1 + JN.1.9 + XFC.1 | BC BR: 122-123, 138-139 | BC BR coord: 26872 - 26873, 29498 - 29499 |
| Direction L1: >> | Initial region span: 1-122,123-138,139-141 | Gap history (edge excluded): 122-139 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.61e-03 | |
| Rec. model vs L1: 3.78e-25 | Rec. model vs L2: 2.11e-135 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
122 |
236.595979 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1.1 |
2345 |
132 |
183.270866 |
172.536049 |
-51.072098 |
1.343312e-31 |
|
|
|
| LP.8.1 |
1124 |
132 |
182.941714 |
171.094644 |
-48.189287 |
3.182678e-32 |
|
|
|
| XFC.1.1.1 |
21 |
122 |
182.754099 |
189.881954 |
-85.763909 |
4.581572e-24 |
|
* |
|
| NY.7 |
36 |
122 |
162.662445 |
154.876281 |
-15.752562 |
2.874327e-39 |
|
* |
|
| NY.15 |
216 |
127 |
143.731958 |
138.662254 |
16.675493 |
2.608862e-46 |
|
|
|
| NY.9 |
107 |
132 |
137.448928 |
126.332387 |
41.335226 |
1.152392e-51 |
|
|
|
| NY.12 |
62 |
122 |
137.329094 |
129.529942 |
34.940116 |
2.827109e-50 |
|
* |
|
| PR.2 |
20 |
122 |
135.572072 |
127.862869 |
38.274263 |
5.348626e-51 |
|
* |
|
| NY.6 |
30 |
122 |
133.560781 |
125.813838 |
42.372325 |
6.885549e-52 |
|
* |
|
| |||||
JN.1.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
138 |
24.592399 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.1 |
47 |
132 |
17.010073 |
1.606645 |
34.786711 |
1.041697e-10 |
|
|
|
| JN.1 |
17255 |
138 |
16.519214 |
16.519214 |
4.961572 |
3.127833e-04 |
* |
* |
|
| KP.2.3 |
4440 |
137 |
15.797610 |
5.797610 |
26.404780 |
6.912047e-09 |
|
* |
|
| JN.1.4 |
8971 |
137 |
15.601325 |
5.601325 |
26.797350 |
5.659105e-09 |
|
* |
|
| KP.3.2.3 |
759 |
132 |
15.452380 |
-0.046251 |
38.092501 |
2.000578e-11 |
|
|
|
| MC.30 |
104 |
132 |
15.421587 |
-0.084658 |
38.169316 |
1.922134e-11 |
|
|
|
| LP.8.1.4 |
191 |
132 |
14.888470 |
-0.573660 |
39.147320 |
1.177550e-11 |
|
|
|
| KP.3.3.1 |
211 |
131 |
14.633121 |
-10.508222 |
59.016445 |
5.705106e-16 |
|
|
|
| XEC.30 |
135 |
131 |
14.125068 |
-10.985133 |
59.970266 |
3.547920e-16 |
|
|
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
139 |
7.024671 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1683_T|C, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11650_C|T, 11727_G|A, 11902_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C,
22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T,
22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A,
23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T,
24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T,
26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29494_G|A,
29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY11434/2025
| Target: 72 samples | Number of changes: 148 | |
| BC: LP.8.1 + XFC.1 | BC BR: 6-7 | BC BR coord: 1956 - 1957 |
| Direction L1: << | Initial region span: 1-6,8-148 | Gap history (edge excluded): 6-8 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 9.62e-40 | Rec. model vs L2: 4.69e-12 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LP.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1 |
1124 |
6 |
13.756682 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.47 |
202 |
4 |
11.496264 |
-8.503736 |
33.007471 |
2.150824e-10 |
|
|
|
| JN.1.7.1 |
120 |
4 |
10.442759 |
-9.557241 |
35.114482 |
7.526544e-11 |
|
|
|
| JN.1.14 |
45 |
4 |
10.017007 |
-9.982993 |
35.965986 |
4.896086e-11 |
|
|
|
| LB.1.3.2 |
390 |
5 |
9.838643 |
-0.161357 |
16.322714 |
9.052995e-07 |
|
* |
|
| KP.2.3 |
4440 |
4 |
5.440081 |
4.213069 |
7.573863 |
7.191685e-05 |
* |
|
|
| BQ.1.1.57 |
173 |
3 |
5.088486 |
-28.363835 |
72.727671 |
5.099369e-19 |
|
|
|
| KP.3.1.1 |
12013 |
4 |
4.452614 |
1.591607 |
12.816785 |
5.209639e-06 |
|
|
|
| BA.5.1.21 |
324 |
3 |
4.442390 |
-15.017612 |
46.035225 |
3.185490e-13 |
|
|
|
| BA.4.1.5 |
35 |
3 |
3.521913 |
-26.478087 |
68.956174 |
3.358625e-18 |
|
|
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
8 |
307.914399 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
8 |
285.600524 |
275.600524 |
-241.201048 |
2.035723e-10 |
|
* |
|
| LP.8.1 |
1124 |
1 |
256.731388 |
242.974706 |
-175.949412 |
1.379943e-24 |
|
|
|
| NY.7 |
36 |
8 |
245.458851 |
235.458851 |
-160.917702 |
7.518620e-28 |
|
* |
|
| LP.8.1.1 |
2345 |
8 |
231.968814 |
221.968814 |
-133.937628 |
1.041131e-33 |
|
* |
|
| PF.2 |
56 |
10 |
213.675881 |
199.317445 |
-88.634890 |
1.508565e-43 |
|
|
|
| NY.7.1 |
28 |
8 |
212.868359 |
202.868359 |
-95.736718 |
5.278141e-42 |
|
* |
|
| NY.15 |
216 |
8 |
210.634010 |
200.634010 |
-91.268021 |
5.647195e-43 |
|
* |
|
| PR.2 |
20 |
6 |
209.786515 |
203.281867 |
-96.563733 |
7.953196e-42 |
|
|
|
| JN.1.16.1 |
466 |
8 |
204.128479 |
202.080282 |
-94.160564 |
2.395457e-42 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 694_T|A, 897_C|A, 1426_C|T, 1954_G|A, 2110_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 8937_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12704_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY11873/2025
| Target: 72 samples | Number of changes: 151 | |
| BC: XFC.1 + JN.1.9 | BC BR: 132-133 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-132,133-151 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.28e-02 | |
| Rec. model vs L1: 1.50e-16 | Rec. model vs L2: 3.09e-140 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
132 |
250.752171 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1 |
1124 |
143 |
239.082446 |
226.566437 |
-163.132874 |
3.137530e-11 |
|
|
|
| XFC.1.1.1 |
21 |
132 |
227.087220 |
227.087220 |
-164.174440 |
5.277413e-11 |
|
* |
|
| NY.7 |
36 |
132 |
204.682589 |
204.682589 |
-119.365177 |
9.867899e-21 |
|
* |
|
| LP.8.1.1 |
2345 |
143 |
194.716254 |
182.970924 |
-75.941848 |
3.660328e-30 |
|
|
|
| NY.15 |
216 |
137 |
177.743799 |
171.060354 |
-52.120708 |
2.460780e-35 |
|
|
|
| NY.12 |
62 |
132 |
171.805098 |
171.805098 |
-53.610196 |
5.183488e-35 |
|
* |
|
| NY.7.1 |
28 |
132 |
171.016159 |
171.016159 |
-52.032318 |
2.352499e-35 |
|
* |
|
| PF.2 |
56 |
132 |
167.980703 |
167.980703 |
-45.961405 |
1.130956e-36 |
|
* |
|
| NY.3 |
209 |
132 |
166.385269 |
166.385269 |
-42.770539 |
2.294806e-37 |
|
* |
|
| |||||
JN.1.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
133 |
23.325594 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
133 |
16.560932 |
16.560932 |
4.878136 |
1.153447e-03 |
* |
* |
|
| JN.1 |
17255 |
133 |
16.052407 |
16.052407 |
5.895186 |
6.926401e-04 |
* |
* |
|
| JN.1.18.6 |
29 |
134 |
15.159394 |
5.159394 |
27.681211 |
1.291340e-08 |
|
* |
|
| MC.2 |
396 |
134 |
12.659426 |
2.659426 |
32.681148 |
1.059997e-09 |
|
* |
|
| MC.25 |
26 |
139 |
12.601213 |
-1.983858 |
41.967715 |
1.018607e-11 |
|
|
|
| XFC.1 |
51 |
145 |
12.287468 |
-5.763569 |
49.527138 |
2.324735e-13 |
|
|
|
| LB.1.2.2 |
175 |
134 |
11.479504 |
1.479504 |
35.040992 |
3.257145e-10 |
|
* |
|
| NW.1 |
111 |
139 |
11.314438 |
-3.270632 |
44.541265 |
2.817982e-12 |
|
|
|
| KP.2.3 |
4440 |
134 |
10.600542 |
9.539073 |
18.921855 |
1.030981e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3885_C|T, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9360_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20759_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21786_G|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY11904/2025
| Target: 72 samples | Number of changes: 152 | |
| BC: XFC.1 + JN.1.9 | BC BR: 133-134 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-133,134-152 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.28e-02 | |
| Rec. model vs L1: 1.49e-16 | Rec. model vs L2: 5.56e-147 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
133 |
254.881633 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1 |
1124 |
144 |
242.650511 |
230.134503 |
-170.269005 |
1.792186e-11 |
|
|
|
| XFC.1.1.1 |
21 |
133 |
232.103985 |
232.103985 |
-174.207971 |
1.285118e-10 |
|
* |
|
| NY.7 |
36 |
133 |
207.214447 |
207.214447 |
-124.428895 |
1.992294e-21 |
|
* |
|
| LP.8.1.1 |
2345 |
144 |
198.522629 |
186.777300 |
-83.554599 |
2.644687e-30 |
|
|
|
| PP.1 |
127 |
133 |
175.774250 |
175.774250 |
-61.548500 |
4.417077e-35 |
|
* |
|
| NY.7.1 |
28 |
133 |
173.799332 |
173.799332 |
-57.598665 |
6.129195e-36 |
|
* |
|
| PF.2 |
56 |
133 |
171.169341 |
171.169341 |
-52.338682 |
4.417829e-37 |
|
* |
|
| NY.3 |
209 |
133 |
170.559510 |
170.559510 |
-51.119020 |
2.400431e-37 |
|
* |
|
| NY.15 |
216 |
138 |
169.625723 |
162.942278 |
-35.884557 |
1.177512e-40 |
|
|
|
| |||||
JN.1.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
134 |
23.325594 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
134 |
16.560932 |
16.560932 |
4.878136 |
1.153447e-03 |
* |
* |
|
| JN.1 |
17255 |
134 |
16.052407 |
16.052407 |
5.895186 |
6.926401e-04 |
* |
* |
|
| JN.1.18.6 |
29 |
135 |
15.159394 |
5.159394 |
27.681211 |
1.291340e-08 |
|
* |
|
| MC.2 |
396 |
135 |
12.659426 |
2.659426 |
32.681148 |
1.059997e-09 |
|
* |
|
| MC.25 |
26 |
140 |
12.601213 |
-1.983858 |
41.967715 |
1.018607e-11 |
|
|
|
| XFC.1 |
51 |
146 |
12.287468 |
-5.763569 |
49.527138 |
2.324735e-13 |
|
|
|
| LB.1.2.2 |
175 |
135 |
11.479504 |
1.479504 |
35.040992 |
3.257145e-10 |
|
* |
|
| NW.1 |
111 |
140 |
11.314438 |
-3.270632 |
44.541265 |
2.817982e-12 |
|
|
|
| KP.2.3 |
4440 |
135 |
10.600542 |
9.539073 |
18.921855 |
1.030981e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3885_C|T, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 13381_C|T,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20759_C|T, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21786_G|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T,
24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C,
27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY12024/2025
| Target: 72 samples | Number of changes: 151 | |
| BC: XFC.1 + JN.1.9 | BC BR: 132-133 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-132,133-151 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.28e-02 | |
| Rec. model vs L1: 1.49e-16 | Rec. model vs L2: 1.11e-146 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
132 |
264.881633 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
132 |
242.103985 |
242.103985 |
-196.207971 |
1.285118e-10 |
|
* |
|
| LP.8.1 |
1124 |
143 |
229.483631 |
216.967622 |
-145.935245 |
1.559378e-21 |
|
|
|
| NY.7 |
36 |
132 |
217.214447 |
217.214447 |
-146.428895 |
1.992294e-21 |
|
* |
|
| LP.8.1.1 |
2345 |
143 |
208.522629 |
196.777300 |
-105.554599 |
2.644687e-30 |
|
|
|
| NY.7.1 |
28 |
132 |
183.799332 |
183.799332 |
-79.598665 |
6.129195e-36 |
|
* |
|
| PF.2 |
56 |
132 |
181.169341 |
181.169341 |
-74.338682 |
4.417829e-37 |
|
* |
|
| NY.15 |
216 |
137 |
179.625723 |
172.942278 |
-57.884557 |
1.177512e-40 |
|
|
|
| LP.8.1.6 |
76 |
132 |
174.290113 |
174.290113 |
-60.580226 |
4.542165e-40 |
|
* |
|
| PR.2 |
20 |
132 |
173.010444 |
173.010444 |
-58.020888 |
1.262891e-40 |
|
* |
|
| |||||
JN.1.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
133 |
23.325594 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
133 |
16.560932 |
16.560932 |
4.878136 |
1.153447e-03 |
* |
* |
|
| JN.1 |
17255 |
133 |
16.052407 |
16.052407 |
5.895186 |
6.926401e-04 |
* |
* |
|
| JN.1.18.6 |
29 |
134 |
15.159394 |
5.159394 |
27.681211 |
1.291340e-08 |
|
* |
|
| MC.2 |
396 |
134 |
12.659426 |
2.659426 |
32.681148 |
1.059997e-09 |
|
* |
|
| MC.25 |
26 |
139 |
12.601213 |
-1.983858 |
41.967715 |
1.018607e-11 |
|
|
|
| XFC.1 |
51 |
145 |
12.287468 |
-5.763569 |
49.527138 |
2.324735e-13 |
|
|
|
| LB.1.2.2 |
175 |
134 |
11.479504 |
1.479504 |
35.040992 |
3.257145e-10 |
|
* |
|
| NW.1 |
111 |
139 |
11.314438 |
-3.270632 |
44.541265 |
2.817982e-12 |
|
|
|
| KP.2.3 |
4440 |
134 |
10.600542 |
9.539073 |
18.921855 |
1.030981e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12565_G|T, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17427_G|A, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T,
25207_C|T, 25487_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY12139/2025
| Target: 72 samples | Number of changes: 151 | |
| BC: NY.3 + XFC.1 | BC BR: 17-18 | BC BR coord: 6743 - 6744 |
| Direction L1: << | Initial region span: 1-14,18-151 | Gap history (edge excluded): 14-18 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.50e-09 | |
| Rec. model vs L1: 6.67e-86 | Rec. model vs L2: 9.60e-22 | |
| Flags: Model_1BP_Best | | |
NY.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NY.3 |
209 |
14 |
39.222924 |
NaN |
NaN |
NaN |
* |
* |
* |
| NY.9 |
107 |
14 |
30.172358 |
0.172358 |
35.655285 |
1.565861e-11 |
|
* |
|
| NY.7 |
36 |
14 |
27.114003 |
-2.885997 |
41.771995 |
7.378764e-13 |
|
* |
|
| PD.2 |
21 |
14 |
27.114003 |
-2.885997 |
41.771995 |
7.378764e-13 |
|
* |
|
| LP.8.1.14 |
51 |
14 |
27.074397 |
-2.925603 |
41.851205 |
7.089439e-13 |
|
* |
|
| NY.3.1 |
24 |
14 |
27.071443 |
-2.928557 |
41.857114 |
7.054080e-13 |
|
* |
|
| PP.2 |
22 |
14 |
27.067483 |
-2.932517 |
41.865035 |
7.018898e-13 |
|
* |
|
| NY.16.1 |
20 |
14 |
27.062709 |
-2.937291 |
41.874581 |
7.018898e-13 |
|
* |
|
| PF.1 |
19 |
14 |
27.059935 |
-2.940065 |
41.880129 |
6.983891e-13 |
|
* |
|
| LP.8.1.11 |
75 |
14 |
27.046705 |
-2.953295 |
41.906590 |
6.879914e-13 |
|
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
18 |
256.902897 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
18 |
240.907031 |
240.907031 |
-195.814062 |
1.125352e-07 |
|
* |
|
| LP.8.1 |
1124 |
18 |
237.256975 |
237.256975 |
-188.513949 |
2.924916e-09 |
|
* |
|
| LP.8.1.1 |
2345 |
1 |
190.222440 |
181.975222 |
-77.950443 |
2.872860e-33 |
|
|
|
| NY.7 |
36 |
18 |
187.141818 |
187.141818 |
-88.283636 |
5.028581e-31 |
|
* |
|
| NY.15 |
216 |
18 |
161.864834 |
161.864834 |
-37.729668 |
5.304598e-42 |
|
* |
|
| NY.3 |
209 |
1 |
161.759841 |
136.711223 |
12.577555 |
6.309207e-53 |
|
|
|
| NY.9 |
107 |
2 |
156.772363 |
146.800473 |
-7.600946 |
1.520569e-48 |
|
|
|
| PF.2 |
56 |
18 |
155.801181 |
155.801181 |
-25.602363 |
1.232130e-44 |
|
* |
|
| NY.7.1 |
28 |
18 |
154.300011 |
154.300011 |
-22.600022 |
2.749253e-45 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3885_C|T, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 6742_G|T, 7113_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20759_C|T, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21786_G|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY12211/2025
| Target: 72 samples | Number of changes: 148 | |
| BC: XFC.1 + JN.1.9 | BC BR: 129-130 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-129,130-148 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.28e-02 | |
| Rec. model vs L1: 1.50e-16 | Rec. model vs L2: 4.36e-152 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
129 |
280.752171 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
129 |
257.087220 |
257.087220 |
-234.174440 |
5.277413e-11 |
|
* |
|
| LP.8.1 |
1124 |
140 |
245.915566 |
233.399557 |
-186.799114 |
2.729960e-21 |
|
|
|
| NY.7 |
36 |
129 |
234.682589 |
234.682589 |
-189.365177 |
9.867899e-21 |
|
* |
|
| LP.8.1.1 |
2345 |
140 |
224.716254 |
212.970924 |
-145.941848 |
3.660328e-30 |
|
|
|
| NY.7.1 |
28 |
129 |
201.016159 |
201.016159 |
-122.032318 |
2.352499e-35 |
|
* |
|
| PF.2 |
56 |
129 |
197.980703 |
197.980703 |
-115.961405 |
1.130956e-36 |
|
* |
|
| NY.15 |
216 |
134 |
195.359263 |
188.675819 |
-97.351637 |
1.028811e-40 |
|
|
|
| PP.1 |
127 |
129 |
191.414854 |
191.414854 |
-102.829708 |
1.593318e-39 |
|
* |
|
| LP.8.1.6 |
76 |
129 |
191.406857 |
191.406857 |
-102.813713 |
1.577464e-39 |
|
* |
|
| |||||
JN.1.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
130 |
23.325594 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
130 |
16.560932 |
16.560932 |
4.878136 |
1.153447e-03 |
* |
* |
|
| JN.1 |
17255 |
130 |
16.052407 |
16.052407 |
5.895186 |
6.926401e-04 |
* |
* |
|
| JN.1.18.6 |
29 |
131 |
15.159394 |
5.159394 |
27.681211 |
1.291340e-08 |
|
* |
|
| MC.2 |
396 |
131 |
12.659426 |
2.659426 |
32.681148 |
1.059997e-09 |
|
* |
|
| MC.25 |
26 |
136 |
12.601213 |
-1.983858 |
41.967715 |
1.018607e-11 |
|
|
|
| XFC.1 |
51 |
142 |
12.287468 |
-5.763569 |
49.527138 |
2.324735e-13 |
|
|
|
| LB.1.2.2 |
175 |
131 |
11.479504 |
1.479504 |
35.040992 |
3.257145e-10 |
|
* |
|
| NW.1 |
111 |
136 |
11.314438 |
-3.270632 |
44.541265 |
2.817982e-12 |
|
|
|
| KP.2.3 |
4440 |
131 |
10.600542 |
9.539073 |
18.921855 |
1.030981e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7093_C|T, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY12402/2025
| Target: 72 samples | Number of changes: 154 | |
| BC: XFC.1 + JN.1.9 | BC BR: 135-136 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-135,136-154 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.28e-02 | |
| Rec. model vs L1: 1.50e-16 | Rec. model vs L2: 3.04e-152 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
135 |
257.836990 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1 |
1124 |
146 |
222.952890 |
210.436882 |
-128.873763 |
2.596818e-21 |
|
|
|
| XFC.1.1.1 |
21 |
135 |
219.890700 |
219.890700 |
-147.781400 |
3.316621e-17 |
|
* |
|
| LP.8.1.1 |
2345 |
146 |
212.278179 |
200.532850 |
-109.065699 |
1.302945e-25 |
|
|
|
| NY.7 |
36 |
135 |
211.010518 |
211.010518 |
-130.021037 |
4.614885e-21 |
|
* |
|
| NY.7.1 |
28 |
135 |
177.779578 |
177.779578 |
-63.559157 |
1.708265e-35 |
|
* |
|
| PF.2 |
56 |
135 |
175.216726 |
175.216726 |
-58.433453 |
1.313983e-36 |
|
* |
|
| NY.15 |
216 |
140 |
172.644387 |
165.960942 |
-39.921884 |
1.256593e-40 |
|
|
|
| LP.8.1.6 |
76 |
135 |
167.978050 |
167.978050 |
-43.956100 |
9.472603e-40 |
|
* |
|
| PP.1 |
127 |
135 |
167.503055 |
167.503055 |
-43.006111 |
5.890870e-40 |
|
* |
|
| |||||
JN.1.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
136 |
23.325594 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
136 |
16.560932 |
16.560932 |
4.878136 |
1.153447e-03 |
* |
* |
|
| JN.1 |
17255 |
136 |
16.052407 |
16.052407 |
5.895186 |
6.926401e-04 |
* |
* |
|
| JN.1.18.6 |
29 |
137 |
15.159394 |
5.159394 |
27.681211 |
1.291340e-08 |
|
* |
|
| MC.2 |
396 |
137 |
12.659426 |
2.659426 |
32.681148 |
1.059997e-09 |
|
* |
|
| MC.25 |
26 |
142 |
12.601213 |
-1.983858 |
41.967715 |
1.018607e-11 |
|
|
|
| XFC.1 |
51 |
148 |
12.287468 |
-5.763569 |
49.527138 |
2.324735e-13 |
|
|
|
| LB.1.2.2 |
175 |
137 |
11.479504 |
1.479504 |
35.040992 |
3.257145e-10 |
|
* |
|
| NW.1 |
111 |
142 |
11.314438 |
-3.270632 |
44.541265 |
2.817982e-12 |
|
|
|
| KP.2.3 |
4440 |
137 |
10.600542 |
9.539073 |
18.921855 |
1.030981e-06 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1148_G|T, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T,
7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11200_C|T, 11288_11296, 11727_G|A, 12493_C|T, 12789_C|T, 12815_C|T,
12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G,
24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 25997_T|C, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T,
27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T,
29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY12567/2025
| Target: 72 samples | Number of changes: 155 | |
| BC: XFC.1 + JN.1.7 + XFC.1 | BC BR: 134-135, 152-153 | BC BR coord: 26872 - 26873, 29509 - 29510 |
| Direction L1: >> | Initial region span: 1-134,136-152,153-155 | Gap history (edge excluded): 134-153 -> 134-136 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.56e-02 | |
| Rec. model vs L1: 2.68e-23 | Rec. model vs L2: 7.82e-130 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
134 |
243.755002 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1 |
1124 |
146 |
219.764580 |
207.490506 |
-116.981013 |
1.582675e-19 |
|
|
|
| XFC.1.1.1 |
21 |
134 |
219.367917 |
226.495772 |
-154.991544 |
2.838955e-11 |
|
* |
|
| LP.8.1.1 |
2345 |
142 |
216.986475 |
207.776614 |
-117.553227 |
2.104582e-19 |
|
|
|
| NY.7 |
36 |
134 |
197.435890 |
189.649726 |
-81.299451 |
2.828644e-27 |
|
* |
|
| LP.8.1.4 |
191 |
142 |
170.525280 |
149.406347 |
-0.812693 |
9.405825e-45 |
|
|
|
| NY.7.1 |
28 |
134 |
164.513251 |
156.621727 |
-15.243453 |
1.278885e-41 |
|
* |
|
| PF.2 |
56 |
134 |
160.985318 |
153.069696 |
-8.139392 |
3.673552e-43 |
|
* |
|
| NY.15 |
216 |
139 |
158.567301 |
153.497596 |
-8.995192 |
5.647195e-43 |
|
|
|
| PP.1 |
127 |
134 |
154.603936 |
146.847255 |
4.305491 |
7.271149e-46 |
|
* |
|
| |||||
JN.1.7 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.7 |
1974 |
136 |
19.702918 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
135 |
13.585285 |
13.585285 |
14.829430 |
4.842422e+01 |
* |
* |
|
| LP.8.1.6 |
76 |
148 |
8.749941 |
-19.153460 |
80.306919 |
2.925912e-13 |
|
|
|
| KP.3.1.1 |
12013 |
136 |
8.046951 |
7.781907 |
26.436187 |
1.458758e-01 |
* |
* |
|
| JN.1.4 |
8971 |
135 |
7.369652 |
7.369652 |
27.260695 |
9.681048e-02 |
* |
* |
|
| KP.2.3 |
4440 |
136 |
7.361657 |
6.300188 |
29.399625 |
3.320682e-02 |
* |
* |
|
| MC.25 |
26 |
144 |
5.827046 |
-14.380015 |
70.760030 |
3.467507e-11 |
|
|
|
| KQ.1 |
383 |
141 |
5.623898 |
-8.966401 |
59.932802 |
7.793311e-09 |
|
|
|
| BA.2.56 |
900 |
152 |
5.434323 |
-22.843164 |
87.686328 |
7.306588e-15 |
|
|
|
| FL.17 |
35 |
152 |
4.955677 |
-59.223042 |
160.446084 |
1.158994e-30 |
|
|
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
153 |
7.024671 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 888_C|T, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3231_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7217_T|C,
7842_A|G, 8293_C|T, 8393_G|A, 8525_G|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T,
12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17733_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G,
24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C,
27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 27879_C|T, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29020_A|G, 29510_A|C,
29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY12730/2025
| Target: 72 samples | Number of changes: 150 | |
| BC: XFC.1 + JN.1.9 | BC BR: 130-131 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-130,131-150 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.15e-07 | |
| Rec. model vs L1: 8.89e-23 | Rec. model vs L2: 2.22e-152 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
130 |
282.179410 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
130 |
257.610003 |
257.610003 |
-233.220007 |
2.134935e-11 |
|
* |
|
| LP.8.1 |
1124 |
141 |
247.027765 |
234.511757 |
-187.023513 |
1.982358e-21 |
|
|
|
| NY.7 |
36 |
130 |
235.764988 |
235.764988 |
-189.529975 |
6.953791e-21 |
|
* |
|
| LP.8.1.1 |
2345 |
141 |
226.152937 |
214.407607 |
-146.815215 |
3.697115e-30 |
|
|
|
| NY.7.1 |
28 |
130 |
201.944408 |
201.944408 |
-121.888815 |
1.426863e-35 |
|
* |
|
| PF.2 |
56 |
130 |
199.468567 |
199.468567 |
-116.937134 |
1.200890e-36 |
|
* |
|
| NY.15 |
216 |
135 |
196.789969 |
190.106524 |
-98.213049 |
1.028811e-40 |
|
|
|
| LP.8.1.6 |
76 |
130 |
192.435188 |
192.435188 |
-102.870377 |
1.057406e-39 |
|
* |
|
| PP.1 |
127 |
130 |
192.389265 |
192.389265 |
-102.778529 |
1.010877e-39 |
|
* |
|
| |||||
JN.1.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
131 |
23.660979 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
131 |
17.171097 |
17.171097 |
11.657806 |
1.518549e-03 |
* |
* |
|
| JN.1 |
17255 |
131 |
16.760803 |
16.760803 |
12.478394 |
1.007785e-03 |
* |
* |
|
| MC.25 |
26 |
137 |
15.341461 |
0.756391 |
44.487218 |
1.128457e-10 |
|
|
|
| KB.1 |
86 |
147 |
12.770066 |
-37.806556 |
121.613113 |
2.023437e-27 |
|
|
|
| XDD.1 |
18 |
147 |
12.743619 |
-37.890161 |
121.780323 |
1.858552e-27 |
|
|
|
| KB.2 |
24 |
147 |
12.738800 |
-37.971354 |
121.942707 |
1.715659e-27 |
|
|
|
| EG.5.1.7 |
91 |
147 |
12.718438 |
-37.938227 |
121.876454 |
1.767909e-27 |
|
|
|
| XDK.1 |
127 |
143 |
12.695712 |
-5.360527 |
56.721055 |
2.493298e-13 |
|
|
|
| MC.2 |
396 |
132 |
12.676357 |
2.676357 |
40.647286 |
7.697156e-10 |
|
* |
|
|
Target sequence
, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7093_C|T, 7113_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759, 29762_C|T
Case 78 (XFC): USA/CA-LACPHL-AY13055/2025
| Target: 72 samples | Number of changes: 157 | |
| BC: LP.8.1.1 + XFC.1 | BC BR: 20-21 | BC BR coord: 6694 - 6695 |
| Direction L1: << | Initial region span: 1-18,21-157 | Gap history (edge excluded): 18-21 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.86e-43 | Rec. model vs L2: 7.06e-27 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LP.8.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1.1 |
2345 |
18 |
19.397030 |
NaN |
NaN |
NaN |
* |
* |
* |
| NY.1 |
25 |
18 |
12.872101 |
-7.127899 |
62.255799 |
1.907285e-08 |
|
* |
|
| MC.9.1 |
15 |
5 |
11.845534 |
-64.450330 |
176.900660 |
2.435880e-33 |
|
|
|
| KP.3.2.1 |
70 |
5 |
10.542015 |
-62.988183 |
173.976366 |
1.048880e-32 |
|
|
|
| XFJ.1 |
59 |
5 |
10.441274 |
-69.874613 |
187.749226 |
1.073021e-35 |
|
|
|
| KP.3.3.1 |
211 |
5 |
9.348011 |
-56.616285 |
161.232570 |
6.156773e-30 |
|
|
|
| MC.11 |
393 |
6 |
9.345400 |
-36.584475 |
121.168951 |
3.078021e-21 |
|
|
|
| LP.8.1 |
1124 |
18 |
8.501551 |
-11.498449 |
70.996899 |
2.412952e-10 |
|
* |
|
| MC.24 |
831 |
5 |
8.467215 |
-57.510213 |
163.020427 |
2.515704e-30 |
|
|
|
| NY.13 |
463 |
18 |
8.443691 |
-11.556309 |
71.112619 |
2.283823e-10 |
|
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
21 |
239.769652 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
21 |
210.907031 |
210.907031 |
-125.814062 |
2.911319e-13 |
|
* |
|
| LP.8.1 |
1124 |
10 |
209.727890 |
203.969557 |
-111.939114 |
2.833072e-16 |
|
|
|
| LP.8.1.1 |
2345 |
3 |
204.363168 |
185.153775 |
-74.307550 |
1.909883e-24 |
|
|
|
| NY.7 |
36 |
10 |
176.142054 |
170.356880 |
-44.713759 |
7.135896e-31 |
|
|
|
| NY.15 |
216 |
68 |
150.831708 |
143.288136 |
9.423727 |
1.256806e-42 |
|
|
|
| KP.3.1 |
1957 |
20 |
144.723143 |
144.391837 |
7.216325 |
3.775655e-42 |
|
* |
|
| LP.8.1.4 |
191 |
68 |
144.587112 |
127.025122 |
41.949757 |
1.085097e-49 |
|
|
|
| PF.2 |
56 |
12 |
144.359085 |
139.673023 |
16.653954 |
3.382936e-44 |
|
|
|
| NY.6 |
30 |
68 |
142.922302 |
131.807138 |
32.385724 |
1.292398e-47 |
|
|
|
|
Target sequence
, 44_C|T, 174_G|C, 241_C|T, 670_T|G, 897_C|A, 1426_C|T, 1954_G|A, 2066_A|G, 2644_C|T, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A,
6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 10729_A|G, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T,
12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 14955_A|G, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22005_A|C, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A,
24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26305_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T,
27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C,
29625_C|T, 29734_29759
Case 78 (XFC): USA/CA-LACPHL-AY13072/2025
| Target: 72 samples | Number of changes: 151 | |
| BC: XFC.1 + JN.1.9 | BC BR: 131-132 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-131,132-151 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.56e-01 | |
| Rec. model vs L1: 1.78e-22 | Rec. model vs L2: 1.47e-145 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
131 |
260.752171 |
NaN |
NaN |
NaN |
* |
* |
* |
| LP.8.1 |
1124 |
143 |
244.675505 |
232.322274 |
-178.644547 |
4.497880e-13 |
|
|
|
| XFC.1.1.1 |
21 |
131 |
237.087220 |
237.087220 |
-188.174440 |
5.277413e-11 |
|
* |
|
| LP.8.1.1 |
2345 |
143 |
222.245284 |
212.091270 |
-138.182540 |
7.365980e-22 |
|
|
|
| NY.7 |
36 |
131 |
214.682589 |
214.682589 |
-143.365177 |
9.867899e-21 |
|
* |
|
| NY.7.1 |
28 |
131 |
181.016159 |
181.016159 |
-76.032318 |
2.352499e-35 |
|
* |
|
| LP.8.1.4 |
191 |
143 |
178.008479 |
161.478630 |
-36.957261 |
7.719458e-44 |
|
|
|
| PF.2 |
56 |
131 |
177.980703 |
177.980703 |
-69.961405 |
1.130956e-36 |
|
* |
|
| NY.15 |
216 |
136 |
175.359263 |
168.675819 |
-51.351637 |
1.028811e-40 |
|
|
|
| PP.1 |
127 |
131 |
171.414854 |
171.414854 |
-56.829708 |
1.593318e-39 |
|
* |
|
| |||||
JN.1.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.9 |
576 |
132 |
23.138211 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.4 |
8971 |
132 |
14.726517 |
14.726517 |
16.546966 |
2.215195e-04 |
* |
* |
|
| JN.1 |
17255 |
132 |
14.544716 |
14.544716 |
16.910568 |
1.850286e-04 |
* |
* |
|
| XFC.1 |
51 |
145 |
12.287468 |
-15.763569 |
77.527138 |
1.269911e-17 |
|
|
|
| KP.2.3 |
4440 |
133 |
10.450298 |
9.388829 |
27.222341 |
1.067704e-06 |
|
* |
|
| KP.1.1.1 |
578 |
132 |
9.369149 |
9.369149 |
27.261702 |
1.046562e-06 |
|
* |
|
| JN.1.18.6 |
29 |
145 |
8.988265 |
-4.840606 |
55.681211 |
7.054080e-13 |
|
|
|
| XDD.1.1 |
29 |
145 |
8.953173 |
-43.277945 |
132.555891 |
1.426135e-29 |
|
|
|
| LE.1 |
27 |
145 |
8.890020 |
-19.131163 |
84.262326 |
4.389067e-19 |
|
|
|
| JN.1.39.3 |
31 |
145 |
8.889973 |
-19.013427 |
84.026855 |
4.923978e-19 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3259_G|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 16726_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24734_C|T, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C,
27807_C|T, 27810_T|C, 27881_C|T, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/IVY-G25Z05G8/2025
| Target: 72 samples | Number of changes: 146 | |
| BC: XFC.1 + MC.25 + XFC.1 | BC BR: 132-133, 139-140 | BC BR coord: 27387 - 27388, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-132,134-139,140-146 | Gap history (edge excluded): 132-140 -> 132-134 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.04e-01 | |
| Rec. model vs L1: 4.85e-09 | Rec. model vs L2: 1.36e-215 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
132 |
284.875629 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
132 |
260.282175 |
272.672827 |
-241.345654 |
2.312747e-11 |
|
* |
|
| LP.8.1 |
1124 |
138 |
245.437741 |
243.118748 |
-182.237496 |
3.377184e-24 |
|
|
|
| NY.7 |
36 |
132 |
238.350148 |
235.826781 |
-167.653562 |
2.292854e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
138 |
213.022632 |
211.772332 |
-119.544663 |
8.192618e-38 |
|
|
|
| NY.7.1 |
28 |
132 |
205.427510 |
202.798782 |
-101.597564 |
1.041840e-41 |
|
* |
|
| PF.2 |
56 |
132 |
201.935614 |
199.282788 |
-94.565576 |
3.099246e-43 |
|
* |
|
| PP.1 |
127 |
132 |
195.518195 |
193.024310 |
-82.048620 |
5.923422e-46 |
|
* |
|
| LP.8.1.6 |
76 |
132 |
195.512826 |
193.045739 |
-82.091478 |
6.043083e-46 |
|
* |
|
| NY.15 |
216 |
132 |
192.807395 |
199.683932 |
-95.367864 |
4.623532e-43 |
|
* |
|
| |||||
MC.25 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.25 |
26 |
134 |
14.942259 |
NaN |
NaN |
NaN |
* |
* |
* |
| NW.1 |
111 |
134 |
13.769894 |
3.769894 |
8.460211 |
0.310367 |
* |
* |
|
| JN.1.47.2 |
60 |
134 |
11.507160 |
1.507160 |
12.985680 |
0.032225 |
* |
* |
|
| JN.1.18.4 |
64 |
134 |
10.735366 |
0.735366 |
14.529267 |
0.014921 |
* |
* |
|
| GW.1 |
11 |
136 |
10.468938 |
-8.767402 |
33.534804 |
0.000001 |
|
|
|
| MC.2 |
396 |
133 |
9.723046 |
9.723046 |
-3.446092 |
119.701363 |
* |
* |
|
| JN.1.9 |
576 |
133 |
9.638327 |
9.638327 |
-3.276654 |
109.947172 |
* |
* |
|
| LB.1.2 |
199 |
134 |
9.602673 |
-0.397327 |
16.794654 |
0.004820 |
* |
* |
|
| KQ.1 |
383 |
134 |
8.926897 |
-1.073103 |
18.146206 |
0.002442 |
* |
* |
|
| JN.1.8.1 |
1498 |
133 |
8.846168 |
2.917321 |
10.165359 |
0.131994 |
* |
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
140 |
12.287468 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21983_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T,
23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26115_A|G,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T,
28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MA-MASPHL-14198/2025
| Target: 72 samples | Number of changes: 148 | |
| BC: JN.1.16.1 + XFC.1 | BC BR: 13-14 | BC BR coord: 4809 - 4810 |
| Direction L1: << | Initial region span: 1-13,16-148 | Gap history (edge excluded): 13-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.12e-04 | |
| Rec. model vs L1: 9.33e-65 | Rec. model vs L2: 3.02e-23 | |
| Flags: Model_1BP_Best | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
13 |
24.093307 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.16 |
332 |
12 |
23.686312 |
13.686312 |
0.627376 |
3.012967e-05 |
* |
* |
|
| JN.1 |
17255 |
12 |
18.420777 |
18.229291 |
-8.458583 |
2.837023e-03 |
* |
* |
|
| XEC.30 |
135 |
12 |
18.413069 |
8.413069 |
11.173862 |
1.549753e-07 |
|
* |
|
| KP.1.1.3 |
979 |
15 |
16.112732 |
8.429205 |
11.141590 |
1.573175e-07 |
|
|
|
| XDY.6 |
11 |
13 |
13.873495 |
13.873495 |
0.253010 |
3.643430e-05 |
* |
* |
|
| MC.1 |
932 |
15 |
13.492808 |
10.433837 |
7.132326 |
1.168254e-06 |
|
|
|
| XDY.5 |
17 |
13 |
12.640378 |
12.640378 |
2.719244 |
1.059636e-05 |
* |
* |
|
| JN.1.28 |
51 |
13 |
12.510761 |
12.510761 |
2.978479 |
9.304615e-06 |
|
* |
|
| KP.2.3.11 |
56 |
13 |
12.136337 |
12.136337 |
3.727325 |
6.394962e-06 |
|
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
16 |
292.619810 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
16 |
277.511247 |
265.928095 |
-227.856189 |
1.888629e-10 |
|
* |
|
| LP.8.1 |
1124 |
7 |
252.608827 |
242.690934 |
-181.381868 |
1.524554e-20 |
|
|
|
| LP.8.1.1 |
2345 |
7 |
222.698112 |
211.916205 |
-119.832410 |
6.572493e-34 |
|
|
|
| NY.7 |
36 |
16 |
221.261127 |
216.963714 |
-129.927428 |
1.025457e-31 |
|
* |
|
| PF.2 |
56 |
16 |
201.018142 |
196.720729 |
-89.441458 |
1.654343e-40 |
|
* |
|
| JN.1.16.1 |
466 |
1 |
197.521316 |
173.428008 |
-42.856017 |
1.270302e-50 |
|
|
|
| NY.15 |
216 |
7 |
195.669971 |
182.152816 |
-60.305632 |
7.818552e-47 |
|
|
|
| NY.9 |
107 |
7 |
190.349048 |
178.773337 |
-53.546674 |
2.662018e-48 |
|
|
|
| LF.7 |
58 |
22 |
189.359284 |
143.224339 |
17.551322 |
9.683718e-64 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1393_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4579_T|A, 4999_C|T, 5979_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
13728_T|C, 14408_C|T, 15714_C|T, 15720_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C,
21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C,
22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MA-MASPHL-14204/2025
| Target: 72 samples | Number of changes: 146 | |
| BC: XFC.1 + NY.9 + XFC.1 | BC BR: 11-12, 13-14 | BC BR coord: 4581 - 4582, 6182 - 6183 |
| Direction L1: << | Initial region span: 1-11,12-13,14-146 | Gap history (edge excluded): 11-14 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 6.21e-06 | |
| Rec. model vs L1: 4.10e-16 | Rec. model vs L2: 7.41e-96 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
11 |
6.256999 |
None |
None |
None |
* |
* |
* |
| |||||
NY.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| NY.9 |
107 |
12 |
9.901323 |
NaN |
NaN |
NaN |
* |
* |
* |
| PP.1 |
127 |
12 |
8.631353 |
8.631353 |
-11.262706 |
2.808316e-01 |
* |
* |
|
| KP.1.1.3 |
979 |
12 |
7.683526 |
7.683526 |
-9.367053 |
1.091535e-01 |
* |
* |
|
| B.1.1.232 |
220 |
13 |
7.642016 |
-2.357984 |
10.715968 |
4.737505e-06 |
|
* |
|
| LP.8.1 |
1124 |
12 |
6.447326 |
6.447326 |
-6.894652 |
3.158730e-02 |
* |
* |
|
| MC.1.4 |
125 |
12 |
5.764823 |
5.764823 |
-5.529645 |
1.600267e-02 |
* |
* |
|
| LP.8.1.1 |
2345 |
12 |
5.714219 |
5.714219 |
-5.428438 |
1.522221e-02 |
* |
* |
|
| FL.32.1 |
13 |
13 |
5.208004 |
-9.242033 |
24.484065 |
4.870837e-09 |
|
* |
|
| NP.1 |
16 |
13 |
5.000364 |
-4.999636 |
15.999271 |
3.380743e-07 |
|
* |
|
| JN.1.7.3 |
19 |
13 |
4.828514 |
-5.171486 |
16.342972 |
2.852214e-07 |
|
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
14 |
297.332378 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
14 |
278.094463 |
272.515666 |
-235.031333 |
3.193736e-14 |
|
* |
|
| LP.8.1 |
1124 |
5 |
252.615939 |
240.847899 |
-171.695797 |
5.654109e-28 |
|
|
|
| LP.8.1.1 |
2345 |
5 |
222.727067 |
211.686359 |
-113.372718 |
1.219455e-40 |
|
|
|
| NY.7 |
36 |
14 |
221.844343 |
216.314337 |
-122.628673 |
1.250112e-38 |
|
* |
|
| PF.2 |
56 |
14 |
201.868421 |
196.209946 |
-82.419892 |
2.319843e-47 |
|
* |
|
| NY.15 |
216 |
5 |
195.665339 |
194.653577 |
-79.307154 |
4.899261e-48 |
|
|
|
| NY.9 |
107 |
5 |
190.219291 |
175.018008 |
-40.036015 |
1.454650e-56 |
|
|
|
| NY.7.1 |
28 |
14 |
189.326586 |
183.760212 |
-57.520424 |
9.088500e-53 |
|
* |
|
| JN.1.16.1 |
466 |
14 |
185.066418 |
187.560672 |
-65.121345 |
4.062667e-51 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1393_A|G, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 4579_T|A, 4999_C|T, 5979_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 13728_T|C, 14408_C|T,
15714_C|T, 15720_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MA-MASPHL-14213/2025
| Target: 72 samples | Number of changes: 148 | |
| BC: JN.1.16.1 + XFC.1 | BC BR: 13-14 | BC BR coord: 4809 - 4810 |
| Direction L1: << | Initial region span: 1-13,16-148 | Gap history (edge excluded): 13-16 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.12e-04 | |
| Rec. model vs L1: 2.29e-69 | Rec. model vs L2: 3.02e-23 | |
| Flags: Model_1BP_Best | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
13 |
24.093307 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.16 |
332 |
12 |
23.686312 |
13.686312 |
0.627376 |
3.012967e-05 |
* |
* |
|
| JN.1 |
17255 |
12 |
18.420777 |
18.229291 |
-8.458583 |
2.837023e-03 |
* |
* |
|
| XEC.30 |
135 |
12 |
18.413069 |
8.413069 |
11.173862 |
1.549753e-07 |
|
* |
|
| KP.1.1.3 |
979 |
15 |
16.112732 |
8.429205 |
11.141590 |
1.573175e-07 |
|
|
|
| XDY.6 |
11 |
13 |
13.873495 |
13.873495 |
0.253010 |
3.643430e-05 |
* |
* |
|
| MC.1 |
932 |
15 |
13.492808 |
10.433837 |
7.132326 |
1.168254e-06 |
|
|
|
| XDY.5 |
17 |
13 |
12.640378 |
12.640378 |
2.719244 |
1.059636e-05 |
* |
* |
|
| JN.1.28 |
51 |
13 |
12.510761 |
12.510761 |
2.978479 |
9.304615e-06 |
|
* |
|
| KP.2.3.11 |
56 |
13 |
12.136337 |
12.136337 |
3.727325 |
6.394962e-06 |
|
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
16 |
296.521338 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
16 |
280.525472 |
268.942319 |
-247.884639 |
7.717080e-11 |
|
* |
|
| LP.8.1 |
1124 |
7 |
257.068190 |
247.150297 |
-204.300593 |
2.655683e-20 |
|
|
|
| LP.8.1.1 |
2345 |
7 |
226.921874 |
216.139967 |
-142.279933 |
9.051162e-34 |
|
|
|
| NY.7 |
36 |
16 |
226.760258 |
222.462845 |
-154.925690 |
5.053787e-31 |
|
* |
|
| PF.2 |
56 |
16 |
205.860494 |
201.563081 |
-113.126162 |
4.235086e-40 |
|
* |
|
| NY.15 |
216 |
7 |
199.434502 |
185.917346 |
-81.834693 |
6.763222e-47 |
|
|
|
| NY.9 |
107 |
7 |
195.820098 |
184.244387 |
-78.488774 |
1.273157e-47 |
|
|
|
| NY.7.1 |
28 |
16 |
193.918452 |
189.621039 |
-89.242077 |
2.749253e-45 |
|
* |
|
| JN.1.16.1 |
466 |
1 |
192.243379 |
168.150072 |
-46.300144 |
1.302903e-54 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1393_A|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4579_T|A, 4999_C|T, 5979_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
13728_T|C, 14408_C|T, 15714_C|T, 15720_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MN-MDH-46633/2025
| Target: 72 samples | Number of changes: 147 | |
| BC: XEC.28 + XFC.1 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-147 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.64e-198 | Rec. model vs L2: 2.95e-08 | |
| Flags: Model_2BP_Bad_L1_opp | | |
XEC.28 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.28 |
39 |
4 |
9.397373 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.1.1.2 |
12 |
4 |
8.575206 |
8.575206 |
-9.150412 |
0.440432 |
* |
* |
|
| JN.1.39.1 |
40 |
4 |
8.469846 |
8.469846 |
-8.939691 |
0.396531 |
* |
* |
|
| LF.7.1 |
165 |
5 |
8.237031 |
5.923623 |
-3.847246 |
0.031117 |
* |
* |
|
| PY.2 |
17 |
4 |
8.226899 |
8.226899 |
-8.453799 |
0.310367 |
* |
* |
|
| MC.30.1 |
18 |
4 |
8.169741 |
8.169741 |
-8.339482 |
0.293758 |
* |
* |
|
| XEC.4.6 |
10 |
4 |
8.141342 |
8.141342 |
-8.282683 |
0.285076 |
* |
* |
|
| MD.1 |
19 |
4 |
8.115674 |
8.115674 |
-8.231348 |
0.278037 |
* |
* |
|
| JN.1.8.2 |
17 |
4 |
8.105650 |
8.105650 |
-8.211300 |
0.275271 |
* |
* |
|
| PG.6 |
23 |
4 |
7.924619 |
7.924619 |
-7.849237 |
0.229925 |
* |
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
6 |
313.272614 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
6 |
289.474465 |
269.067637 |
-222.135273 |
1.396231e-15 |
|
* |
|
| LP.8.1 |
1124 |
1 |
265.075276 |
259.980734 |
-203.961467 |
1.574782e-19 |
|
|
|
| NY.7 |
36 |
6 |
252.290303 |
242.290303 |
-168.580605 |
3.270025e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
1 |
242.865382 |
238.001179 |
-160.002359 |
4.481544e-29 |
|
|
|
| NY.7.1 |
28 |
6 |
220.192287 |
202.884840 |
-89.769680 |
2.518703e-44 |
|
* |
|
| NY.15 |
216 |
6 |
216.138195 |
206.138195 |
-96.276390 |
6.528381e-43 |
|
* |
|
| PF.2 |
56 |
6 |
215.707064 |
205.707064 |
-95.414128 |
4.225590e-43 |
|
* |
|
| NY.13 |
463 |
3 |
209.653135 |
205.000295 |
-94.000589 |
2.087900e-43 |
|
|
|
| PR.2 |
20 |
6 |
206.605116 |
196.605116 |
-77.210232 |
4.718540e-47 |
|
* |
|
|
Target sequence
, 241_C|T, 516_518, 670_T|G, 897_C|A, 1426_C|T, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
8937_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12704_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T,
25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MN-MDH-46650/2025
| Target: 72 samples | Number of changes: 147 | |
| BC: XFC.1 + MC.25 + XFC.1 | BC BR: 133-134, 140-141 | BC BR coord: 27387 - 27388, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-133,135-140,141-147 | Gap history (edge excluded): 133-141 -> 133-135 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.04e-01 | |
| Rec. model vs L1: 4.82e-09 | Rec. model vs L2: 1.67e-215 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
133 |
299.169932 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
133 |
274.782847 |
287.173498 |
-272.346997 |
2.853185e-11 |
|
* |
|
| LP.8.1 |
1124 |
139 |
259.918781 |
257.599788 |
-213.199577 |
4.083858e-24 |
|
|
|
| NY.7 |
36 |
133 |
252.850819 |
250.327452 |
-198.654904 |
2.828644e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
139 |
227.499306 |
226.249006 |
-150.498012 |
9.906920e-38 |
|
|
|
| NY.7.1 |
28 |
133 |
219.928181 |
217.299453 |
-132.598906 |
1.285296e-41 |
|
* |
|
| PF.2 |
56 |
133 |
216.400248 |
213.747422 |
-125.494845 |
3.673552e-43 |
|
* |
|
| PP.1 |
127 |
133 |
210.018866 |
207.524981 |
-113.049962 |
7.307595e-46 |
|
* |
|
| LP.8.1.6 |
76 |
133 |
210.013497 |
207.546410 |
-113.092820 |
7.455219e-46 |
|
* |
|
| NY.15 |
216 |
133 |
207.298786 |
214.175323 |
-126.350645 |
5.647195e-43 |
|
* |
|
| |||||
MC.25 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.25 |
26 |
135 |
14.942259 |
NaN |
NaN |
NaN |
* |
* |
* |
| NW.1 |
111 |
135 |
13.769894 |
3.769894 |
8.460211 |
0.310367 |
* |
* |
|
| JN.1.47.2 |
60 |
135 |
11.507160 |
1.507160 |
12.985680 |
0.032225 |
* |
* |
|
| JN.1.18.4 |
64 |
135 |
10.735366 |
0.735366 |
14.529267 |
0.014921 |
* |
* |
|
| GW.1 |
11 |
137 |
10.468938 |
-8.767402 |
33.534804 |
0.000001 |
|
|
|
| MC.2 |
396 |
134 |
9.723046 |
9.723046 |
-3.446092 |
119.701363 |
* |
* |
|
| JN.1.9 |
576 |
134 |
9.638327 |
9.638327 |
-3.276654 |
109.947172 |
* |
* |
|
| LB.1.2 |
199 |
135 |
9.602673 |
-0.397327 |
16.794654 |
0.004820 |
* |
* |
|
| KQ.1 |
383 |
135 |
8.926897 |
-1.073103 |
18.146206 |
0.002442 |
* |
* |
|
| JN.1.8.1 |
1498 |
134 |
8.846168 |
2.917321 |
10.165359 |
0.131994 |
* |
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
141 |
12.287468 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T,
26115_A|G, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MN-MDH-46834/2025
| Target: 72 samples | Number of changes: 145 | |
| BC: LP.8.1 + XFC.1 | BC BR: 7-8 | BC BR coord: 3037 - 3038 |
| Direction L1: << | Initial region span: 1-7,9-145 | Gap history (edge excluded): 7-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 3.83e-01 | |
| Rec. model vs L1: 3.15e-39 | Rec. model vs L2: 2.04e-06 | |
| Flags: Model_1BP_Best | | |
LP.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1 |
1124 |
7 |
12.711222 |
NaN |
NaN |
NaN |
* |
* |
* |
| NY.13 |
463 |
7 |
12.469276 |
12.469276 |
-6.938552 |
7.866279e-01 |
* |
* |
|
| LP.8.1.1 |
2345 |
7 |
11.983068 |
11.983068 |
-5.966137 |
4.843246e-01 |
* |
* |
|
| XEL.4 |
10 |
4 |
11.039560 |
2.120654 |
13.758691 |
2.516642e-05 |
* |
|
|
| XEC.8 |
592 |
4 |
9.570849 |
-5.622564 |
29.245127 |
1.089458e-08 |
|
|
|
| KP.2.2.1 |
55 |
4 |
8.749548 |
-0.169358 |
18.338716 |
2.548514e-06 |
|
|
|
| JN.1.1.3 |
30 |
4 |
8.331510 |
-7.831918 |
33.663837 |
1.201134e-09 |
|
|
|
| MC.33 |
31 |
4 |
8.298720 |
-0.620186 |
19.240371 |
1.625004e-06 |
|
|
|
| XEC.29 |
135 |
4 |
7.520580 |
-7.684727 |
33.369454 |
1.388558e-09 |
|
|
|
| XEC.32 |
42 |
4 |
7.301891 |
-7.903416 |
33.806833 |
1.114344e-09 |
|
|
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
9 |
325.706674 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
14 |
302.806169 |
291.783361 |
-281.566723 |
4.089554e-11 |
|
|
|
| LP.8.1 |
1124 |
1 |
274.660019 |
261.948797 |
-221.897593 |
4.513362e-24 |
|
|
|
| NY.7 |
36 |
9 |
264.599199 |
254.599199 |
-207.198399 |
2.900252e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
1 |
242.577555 |
230.594486 |
-159.188972 |
1.089423e-37 |
|
|
|
| PF.2 |
56 |
9 |
233.491859 |
218.052328 |
-134.104657 |
3.881257e-43 |
|
* |
|
| NY.7.1 |
28 |
9 |
232.501184 |
222.501184 |
-143.002367 |
3.323402e-41 |
|
* |
|
| NY.15 |
216 |
9 |
228.494494 |
218.494494 |
-134.988988 |
6.056663e-43 |
|
* |
|
| NY.13 |
463 |
1 |
219.657701 |
207.188425 |
-112.376849 |
7.456488e-48 |
|
|
|
| PR.2 |
20 |
9 |
219.019373 |
209.019373 |
-116.038746 |
4.648290e-47 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1426_C|T, 1954_G|A, 2790_C|T, 3037_C|T, 3218_3220, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MN-MDH-46650/2025
| Target: 72 samples | Number of changes: 147 | |
| BC: XFC.1 + MC.25 + XFC.1 | BC BR: 133-134, 140-141 | BC BR coord: 27387 - 27388, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-133,135-140,141-147 | Gap history (edge excluded): 133-141 -> 133-135 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.04e-01 | |
| Rec. model vs L1: 4.82e-09 | Rec. model vs L2: 1.67e-215 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
133 |
299.169932 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
133 |
274.782847 |
287.173498 |
-272.346997 |
2.853185e-11 |
|
* |
|
| LP.8.1 |
1124 |
139 |
259.918781 |
257.599788 |
-213.199577 |
4.083858e-24 |
|
|
|
| NY.7 |
36 |
133 |
252.850819 |
250.327452 |
-198.654904 |
2.828644e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
139 |
227.499306 |
226.249006 |
-150.498012 |
9.906920e-38 |
|
|
|
| NY.7.1 |
28 |
133 |
219.928181 |
217.299453 |
-132.598906 |
1.285296e-41 |
|
* |
|
| PF.2 |
56 |
133 |
216.400248 |
213.747422 |
-125.494845 |
3.673552e-43 |
|
* |
|
| PP.1 |
127 |
133 |
210.018866 |
207.524981 |
-113.049962 |
7.307595e-46 |
|
* |
|
| LP.8.1.6 |
76 |
133 |
210.013497 |
207.546410 |
-113.092820 |
7.455219e-46 |
|
* |
|
| NY.15 |
216 |
133 |
207.298786 |
214.175323 |
-126.350645 |
5.647195e-43 |
|
* |
|
| |||||
MC.25 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.25 |
26 |
135 |
14.942259 |
NaN |
NaN |
NaN |
* |
* |
* |
| NW.1 |
111 |
135 |
13.769894 |
3.769894 |
8.460211 |
0.310367 |
* |
* |
|
| JN.1.47.2 |
60 |
135 |
11.507160 |
1.507160 |
12.985680 |
0.032225 |
* |
* |
|
| JN.1.18.4 |
64 |
135 |
10.735366 |
0.735366 |
14.529267 |
0.014921 |
* |
* |
|
| GW.1 |
11 |
137 |
10.468938 |
-8.767402 |
33.534804 |
0.000001 |
|
|
|
| MC.2 |
396 |
134 |
9.723046 |
9.723046 |
-3.446092 |
119.701363 |
* |
* |
|
| JN.1.9 |
576 |
134 |
9.638327 |
9.638327 |
-3.276654 |
109.947172 |
* |
* |
|
| LB.1.2 |
199 |
135 |
9.602673 |
-0.397327 |
16.794654 |
0.004820 |
* |
* |
|
| KQ.1 |
383 |
135 |
8.926897 |
-1.073103 |
18.146206 |
0.002442 |
* |
* |
|
| JN.1.8.1 |
1498 |
134 |
8.846168 |
2.917321 |
10.165359 |
0.131994 |
* |
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
141 |
12.287468 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T,
26115_A|G, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MN-MDH-46650/2025
| Target: 72 samples | Number of changes: 147 | |
| BC: XFC.1 + MC.25 + XFC.1 | BC BR: 133-134, 140-141 | BC BR coord: 27387 - 27388, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-133,135-140,141-147 | Gap history (edge excluded): 133-141 -> 133-135 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.04e-01 | |
| Rec. model vs L1: 4.82e-09 | Rec. model vs L2: 1.67e-215 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
133 |
299.169932 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
133 |
274.782847 |
287.173498 |
-272.346997 |
2.853185e-11 |
|
* |
|
| LP.8.1 |
1124 |
139 |
259.918781 |
257.599788 |
-213.199577 |
4.083858e-24 |
|
|
|
| NY.7 |
36 |
133 |
252.850819 |
250.327452 |
-198.654904 |
2.828644e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
139 |
227.499306 |
226.249006 |
-150.498012 |
9.906920e-38 |
|
|
|
| NY.7.1 |
28 |
133 |
219.928181 |
217.299453 |
-132.598906 |
1.285296e-41 |
|
* |
|
| PF.2 |
56 |
133 |
216.400248 |
213.747422 |
-125.494845 |
3.673552e-43 |
|
* |
|
| PP.1 |
127 |
133 |
210.018866 |
207.524981 |
-113.049962 |
7.307595e-46 |
|
* |
|
| LP.8.1.6 |
76 |
133 |
210.013497 |
207.546410 |
-113.092820 |
7.455219e-46 |
|
* |
|
| NY.15 |
216 |
133 |
207.298786 |
214.175323 |
-126.350645 |
5.647195e-43 |
|
* |
|
| |||||
MC.25 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.25 |
26 |
135 |
14.942259 |
NaN |
NaN |
NaN |
* |
* |
* |
| NW.1 |
111 |
135 |
13.769894 |
3.769894 |
8.460211 |
0.310367 |
* |
* |
|
| JN.1.47.2 |
60 |
135 |
11.507160 |
1.507160 |
12.985680 |
0.032225 |
* |
* |
|
| JN.1.18.4 |
64 |
135 |
10.735366 |
0.735366 |
14.529267 |
0.014921 |
* |
* |
|
| GW.1 |
11 |
137 |
10.468938 |
-8.767402 |
33.534804 |
0.000001 |
|
|
|
| MC.2 |
396 |
134 |
9.723046 |
9.723046 |
-3.446092 |
119.701363 |
* |
* |
|
| JN.1.9 |
576 |
134 |
9.638327 |
9.638327 |
-3.276654 |
109.947172 |
* |
* |
|
| LB.1.2 |
199 |
135 |
9.602673 |
-0.397327 |
16.794654 |
0.004820 |
* |
* |
|
| KQ.1 |
383 |
135 |
8.926897 |
-1.073103 |
18.146206 |
0.002442 |
* |
* |
|
| JN.1.8.1 |
1498 |
134 |
8.846168 |
2.917321 |
10.165359 |
0.131994 |
* |
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
141 |
12.287468 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T,
26115_A|G, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MN-MDH-47236/2025
| Target: 72 samples | Number of changes: 150 | |
| BC: LP.8.1 + XFC.1 | BC BR: 13-14 | BC BR coord: 4809 - 4810 |
| Direction L1: << | Initial region span: 1-12,14-150 | Gap history (edge excluded): 12-14 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.40e-01 | |
| Rec. model vs L1: 1.97e-30 | Rec. model vs L2: 9.11e-21 | |
| Flags: Model_1BP_Best | | |
LP.8.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LP.8.1 |
1124 |
12 |
21.462790 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.2.3 |
4440 |
13 |
20.034250 |
20.034250 |
-10.068499 |
5.271130e+03 |
* |
* |
|
| LP.8.1.4 |
191 |
12 |
14.197412 |
4.197412 |
21.605175 |
6.961120e-04 |
* |
* |
|
| LP.8.1.3 |
77 |
12 |
13.807079 |
3.807079 |
22.385841 |
4.713074e-04 |
* |
* |
|
| JN.1 |
17255 |
13 |
12.815379 |
12.815379 |
4.369242 |
3.857426e+00 |
* |
* |
|
| KP.3.1.1 |
12013 |
13 |
12.582727 |
12.582727 |
4.834546 |
3.064854e+00 |
* |
* |
|
| NW.1.2 |
34 |
10 |
12.439477 |
-14.132002 |
58.264005 |
7.660070e-12 |
|
|
|
| NY.13 |
463 |
12 |
11.826208 |
1.826208 |
26.347584 |
6.507305e-05 |
* |
* |
|
| LP.8.1.1 |
2345 |
12 |
11.339445 |
1.339445 |
27.321110 |
4.006530e-05 |
* |
* |
|
| XEL.4 |
10 |
4 |
11.039560 |
-8.601653 |
47.203306 |
1.931440e-09 |
|
|
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
14 |
262.472712 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
15 |
240.052125 |
238.468972 |
-166.937945 |
3.756306e-11 |
|
* |
|
| LP.8.1 |
1124 |
1 |
239.151328 |
227.688538 |
-145.377076 |
7.817474e-16 |
|
|
|
| LP.8.1.1 |
2345 |
6 |
200.395816 |
193.389195 |
-76.778390 |
9.925805e-31 |
|
|
|
| NY.7 |
36 |
6 |
199.536259 |
192.462103 |
-74.924205 |
3.916263e-31 |
|
|
|
| JN.1.16.1 |
466 |
15 |
194.890507 |
184.890507 |
-59.781015 |
2.019587e-34 |
|
* |
|
| LF.7 |
58 |
21 |
168.564990 |
132.430045 |
45.139911 |
3.327929e-57 |
|
|
|
| NY.7.1 |
28 |
6 |
167.438243 |
160.364087 |
-10.728174 |
4.510144e-45 |
|
|
|
| NY.6 |
30 |
6 |
164.087870 |
157.013714 |
-4.027428 |
1.582355e-46 |
|
|
|
| NY.16 |
136 |
6 |
163.570184 |
156.540696 |
-3.081393 |
9.840430e-47 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1426_C|T, 1884_C|T, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4483_T|C, 4999_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G, 8293_C|T,
8393_G|A, 8937_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12704_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A,
13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|C,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T,
25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 28079_G|T, 28271_A|T, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29212_G|T, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/MN-MDH-47239/2025
| Target: 72 samples | Number of changes: 148 | |
| BC: XFC.1 + MC.25 + XFC.1 | BC BR: 134-135, 141-142 | BC BR coord: 27387 - 27388, 28880 - 28881 |
| Direction L1: >> | Initial region span: 1-134,136-141,142-148 | Gap history (edge excluded): 134-142 -> 134-136 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 5.04e-01 | |
| Rec. model vs L1: 4.82e-09 | Rec. model vs L2: 1.67e-215 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
134 |
289.169932 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
134 |
264.782847 |
277.173498 |
-250.346997 |
2.853185e-11 |
|
* |
|
| LP.8.1 |
1124 |
140 |
249.918781 |
247.599788 |
-191.199577 |
4.083858e-24 |
|
|
|
| NY.7 |
36 |
134 |
242.850819 |
240.327452 |
-176.654904 |
2.828644e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
140 |
217.499306 |
216.249006 |
-128.498012 |
9.906920e-38 |
|
|
|
| NY.7.1 |
28 |
134 |
209.928181 |
207.299453 |
-110.598906 |
1.285296e-41 |
|
* |
|
| PF.2 |
56 |
134 |
206.400248 |
203.747422 |
-103.494845 |
3.673552e-43 |
|
* |
|
| PP.1 |
127 |
134 |
200.018866 |
197.524981 |
-91.049962 |
7.307595e-46 |
|
* |
|
| LP.8.1.6 |
76 |
134 |
200.013497 |
197.546410 |
-91.092820 |
7.455219e-46 |
|
* |
|
| NY.15 |
216 |
134 |
197.298786 |
204.175323 |
-104.350645 |
5.647195e-43 |
|
* |
|
| |||||
MC.25 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.25 |
26 |
136 |
14.942259 |
NaN |
NaN |
NaN |
* |
* |
* |
| NW.1 |
111 |
136 |
13.769894 |
3.769894 |
8.460211 |
0.310367 |
* |
* |
|
| JN.1.47.2 |
60 |
136 |
11.507160 |
1.507160 |
12.985680 |
0.032225 |
* |
* |
|
| JN.1.18.4 |
64 |
136 |
10.735366 |
0.735366 |
14.529267 |
0.014921 |
* |
* |
|
| GW.1 |
11 |
138 |
10.468938 |
-8.767402 |
33.534804 |
0.000001 |
|
|
|
| MC.2 |
396 |
135 |
9.723046 |
9.723046 |
-3.446092 |
119.701363 |
* |
* |
|
| JN.1.9 |
576 |
135 |
9.638327 |
9.638327 |
-3.276654 |
109.947172 |
* |
* |
|
| LB.1.2 |
199 |
136 |
9.602673 |
-0.397327 |
16.794654 |
0.004820 |
* |
* |
|
| KQ.1 |
383 |
136 |
8.926897 |
-1.073103 |
18.146206 |
0.002442 |
* |
* |
|
| JN.1.8.1 |
1498 |
135 |
8.846168 |
2.917321 |
10.165359 |
0.131994 |
* |
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
142 |
12.287468 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6324_A|G, 6647_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
25925_C|T, 26060_C|T, 26115_A|G, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/NJ-CDC-LC1136665/2025
| Target: 72 samples | Number of changes: 149 | |
| BC: XFC.1 + MC.2 + XFC.1 | BC BR: 134-135, 145-146 | BC BR coord: 27387 - 27388, 28958 - 28959 |
| Direction L1: >> | Initial region span: 1-134,135-145,147-149 | Gap history (edge excluded): 134-147 -> 145-147 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 3.23e-01 | |
| Rec. model vs L1: 1.57e-12 | Rec. model vs L2: 3.88e-171 | |
| Flags: Model_2BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
134 |
289.169932 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
134 |
264.782847 |
261.910701 |
-225.821403 |
2.838955e-11 |
|
* |
|
| LP.8.1 |
1124 |
140 |
261.624109 |
254.402257 |
-210.804514 |
1.554558e-14 |
|
|
|
| NY.7 |
36 |
134 |
242.850819 |
225.064655 |
-152.129310 |
2.828644e-27 |
|
* |
|
| LP.8.1.1 |
2345 |
140 |
227.683641 |
220.795089 |
-143.590179 |
3.954949e-29 |
|
|
|
| NY.7.1 |
28 |
134 |
209.928181 |
192.036656 |
-86.073312 |
1.278885e-41 |
|
* |
|
| PF.2 |
56 |
134 |
206.400248 |
188.484626 |
-78.969251 |
3.673552e-43 |
|
* |
|
| PP.1 |
127 |
134 |
200.018866 |
182.262184 |
-66.524368 |
7.271149e-46 |
|
* |
|
| LP.8.1.6 |
76 |
134 |
200.013497 |
182.283613 |
-66.567227 |
7.455219e-46 |
|
* |
|
| NY.15 |
216 |
134 |
197.298786 |
188.912526 |
-79.825052 |
5.647195e-43 |
|
* |
|
| |||||
MC.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.2 |
396 |
145 |
14.983314 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.9 |
576 |
145 |
14.899386 |
14.899386 |
-5.798773 |
0.918512 |
* |
* |
|
| JN.1.7 |
1974 |
145 |
13.013784 |
13.013784 |
-2.027567 |
0.139457 |
* |
* |
|
| KP.2.3 |
4440 |
145 |
12.963798 |
12.963798 |
-1.927596 |
0.132655 |
* |
* |
|
| PY.1 |
82 |
138 |
11.879550 |
4.692712 |
14.614576 |
0.000034 |
* |
|
|
| JN.1 |
17255 |
145 |
11.321642 |
11.321642 |
1.356716 |
0.025604 |
* |
* |
|
| MC.35 |
258 |
140 |
10.969312 |
6.232109 |
11.535782 |
0.000158 |
* |
|
|
| JN.1.4 |
8971 |
145 |
10.901092 |
10.901092 |
2.197816 |
0.016823 |
* |
* |
|
| NC.1.2.2 |
14 |
140 |
10.791292 |
6.054088 |
11.891823 |
0.000132 |
* |
|
|
| LZ.5 |
14 |
140 |
10.791292 |
6.054088 |
11.891823 |
0.000132 |
* |
|
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
147 |
7.024671 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C,
16877_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19290_C|T, 19955_C|T, 20055_A|G, 20438_G|A, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G,
22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G,
22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A,
23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T,
25584_C|T, 25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29353_C|T, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/NY-PRL-250415_82H03/2025
| Target: 72 samples | Number of changes: 149 | |
| BC: JN.4 + XFC.1 | BC BR: 4-5 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-4,6-149 | Gap history (edge excluded): 4-6 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.79e-211 | Rec. model vs L2: 1.28e-07 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.4 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.4 |
91 |
4 |
10.251882 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.19 |
438 |
4 |
7.261974 |
7.261974 |
-6.523948 |
5.028744e-02 |
* |
* |
|
| XBF.7.1 |
13 |
3 |
7.184143 |
-2.815857 |
13.631714 |
2.118081e-06 |
|
* |
|
| KP.2.2 |
1334 |
4 |
6.120417 |
6.120417 |
-4.240834 |
1.608288e-02 |
* |
* |
|
| BF.7.19 |
413 |
3 |
5.920445 |
-4.079555 |
16.159109 |
5.978057e-07 |
|
* |
|
| LB.1.7 |
1971 |
4 |
5.758423 |
5.758423 |
-3.516847 |
1.122064e-02 |
* |
* |
|
| JN.1 |
17255 |
4 |
4.682442 |
4.682442 |
-1.364885 |
3.810480e-03 |
* |
* |
|
| BA.5.1.15 |
339 |
3 |
4.610322 |
-5.389678 |
18.779355 |
1.613000e-07 |
|
* |
|
| BM.1.1.3 |
341 |
3 |
4.604475 |
-5.395525 |
18.791050 |
1.604955e-07 |
|
* |
|
| BQ.1.1.2 |
1102 |
3 |
4.350924 |
-5.649076 |
19.298152 |
1.243706e-07 |
|
* |
|
| |||||
XFC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
6 |
280.269783 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
18 |
260.907031 |
236.786940 |
-155.573880 |
2.868463e-15 |
|
|
|
| LP.8.1 |
1124 |
6 |
246.405456 |
236.405456 |
-154.810912 |
1.961631e-15 |
|
* |
|
| LP.8.1.1 |
2345 |
6 |
225.548928 |
215.548928 |
-113.097856 |
1.719515e-24 |
|
* |
|
| NY.7 |
36 |
6 |
219.537001 |
209.537001 |
-101.074003 |
4.198795e-27 |
|
* |
|
| NY.15 |
216 |
6 |
194.198673 |
184.198673 |
-50.397345 |
4.171324e-38 |
|
* |
|
| NY.7.1 |
28 |
6 |
186.695195 |
169.387748 |
-20.775495 |
1.543024e-44 |
|
* |
|
| PF.2 |
56 |
6 |
182.702448 |
172.702448 |
-27.404896 |
4.225590e-43 |
|
* |
|
| NY.9 |
107 |
6 |
179.176877 |
169.176877 |
-20.353754 |
1.244513e-44 |
|
* |
|
| LP.8.1.4 |
191 |
6 |
177.046346 |
167.046346 |
-16.092692 |
1.478945e-45 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 674_G|A, 897_C|A, 1825_C|T, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G,
8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T,
22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T,
25925_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29734_29759
Case 78 (XFC): USA/NY-PRL-250512_81H01/2025
| Target: 72 samples | Number of changes: 149 | |
| BC: XFC.1 + JN.1 | BC BR: 129-130 | BC BR coord: 26872 - 26873 |
| Direction L1: >> | Initial region span: 1-129,130-149 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 4.63e-03 | |
| Rec. model vs L1: 1.93e-18 | Rec. model vs L2: 1.21e-83 | |
| Flags: Model_1BP_Best | | |
XFC.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XFC.1 |
51 |
129 |
280.752171 |
NaN |
NaN |
NaN |
* |
* |
* |
| XFC.1.1.1 |
21 |
129 |
257.087220 |
257.087220 |
-234.174440 |
5.277413e-11 |
|
* |
|
| LP.8.1 |
1124 |
140 |
245.915566 |
233.399557 |
-186.799114 |
2.729960e-21 |
|
|
|
| NY.7 |
36 |
129 |
234.682589 |
234.682589 |
-189.365177 |
9.867899e-21 |
|
* |
|
| LP.8.1.1 |
2345 |
140 |
224.716254 |
212.970924 |
-145.941848 |
3.660328e-30 |
|
|
|
| NY.7.1 |
28 |
129 |
201.016159 |
201.016159 |
-122.032318 |
2.352499e-35 |
|
* |
|
| PF.2 |
56 |
129 |
197.980703 |
197.980703 |
-115.961405 |
1.130956e-36 |
|
* |
|
| NY.15 |
216 |
134 |
195.359263 |
188.675819 |
-97.351637 |
1.028811e-40 |
|
|
|
| PP.1 |
127 |
129 |
191.414854 |
191.414854 |
-102.829708 |
1.593318e-39 |
|
* |
|
| LP.8.1.6 |
76 |
129 |
191.406857 |
191.406857 |
-102.813713 |
1.577464e-39 |
|
* |
|
| |||||
JN.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1 |
17255 |
130 |
14.340323 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.9 |
576 |
130 |
13.325594 |
13.325594 |
19.348812 |
3.624024e-01 |
* |
* |
|
| KP.3.1.1 |
12013 |
131 |
7.560725 |
7.295681 |
31.408638 |
8.717569e-04 |
* |
* |
|
| EG.5.1.13 |
511 |
146 |
7.353268 |
-43.249112 |
132.498224 |
9.749465e-26 |
|
|
|
| LP.8.1.1 |
2345 |
131 |
6.572054 |
6.148954 |
33.702093 |
2.774139e-04 |
* |
* |
|
| JN.1.4 |
8971 |
130 |
6.560932 |
6.560932 |
32.878136 |
4.180122e-04 |
* |
* |
|
| JG.3 |
1482 |
146 |
6.256479 |
-44.399894 |
134.799787 |
3.087039e-26 |
|
|
|
| LP.1 |
659 |
136 |
6.138066 |
-8.508009 |
63.016017 |
1.192260e-10 |
|
|
|
| BA.2.86.1 |
1343 |
142 |
5.562791 |
-16.218628 |
78.437256 |
5.345159e-14 |
|
|
|
| EG.5.1.1 |
4177 |
146 |
5.218272 |
-17.978801 |
81.957601 |
9.196072e-15 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 1954_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4999_C|T, 6183_A|G, 6255_C|T, 6647_G|A, 6694_G|A, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18303_C|T, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|G, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23598_A|G, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24819_A|G, 24872_G|T, 24990_C|T, 25000_C|T, 25207_C|T, 25584_C|T, 25925_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27247_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27484_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28311_C|T, 28362_28370, 28519_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29625_C|T, 29711_G|T, 29734_29759
Case 81 (XFM): USA/CT-DPH-1298970001/2025
| Target: 4 samples | Number of changes: 151 | |
| BC: LF.7.9 + MC.1 | BC BR: 141-142 | BC BR coord: 28271 - 28272 |
| Direction L1: >> | Initial region span: 1-141,142-151 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.03e-19 | Rec. model vs L2: 1.82e-208 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.9 |
20 |
141 |
335.593566 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.6.2 |
17 |
121 |
238.279720 |
221.159594 |
-116.319188 |
2.002216e-50 |
|
|
|
| XFJ.1 |
59 |
141 |
196.032277 |
196.032277 |
-66.064553 |
2.441691e-61 |
|
* |
|
| XFJ.3 |
14 |
141 |
190.874228 |
190.874228 |
-55.748457 |
1.408973e-63 |
|
* |
|
| LF.7 |
58 |
121 |
151.037108 |
134.065403 |
57.869194 |
2.996630e-88 |
|
|
|
| LF.7.9.1 |
48 |
121 |
143.116416 |
117.572463 |
90.855075 |
2.055633e-95 |
|
|
|
| LF.7.2.1 |
67 |
121 |
138.660760 |
121.667790 |
82.664420 |
1.240375e-93 |
|
|
|
| LF.7.1 |
165 |
123 |
136.267638 |
128.473831 |
69.052338 |
1.119249e-90 |
|
|
|
| PY.1 |
82 |
121 |
135.288811 |
102.949113 |
120.101774 |
9.195180e-102 |
|
|
|
| PC.3.1 |
27 |
121 |
134.590562 |
117.470436 |
91.059127 |
1.860014e-95 |
|
|
|
| |||||
MC.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.1 |
932 |
142 |
7.683264 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.7.5 |
427 |
145 |
7.201075 |
-1.269791 |
28.539582 |
1.290901e-04 |
* |
|
|
| LB.1.3 |
778 |
145 |
6.549281 |
-1.947511 |
29.895022 |
6.539923e-05 |
* |
|
|
| KP.2.3 |
4440 |
142 |
6.376026 |
6.376026 |
13.247948 |
2.698201e-01 |
* |
* |
|
| GV.1 |
137 |
149 |
6.069949 |
-10.751732 |
47.503464 |
9.857828e-09 |
|
|
|
| NY.3 |
209 |
145 |
5.453218 |
-3.037381 |
32.074762 |
2.209852e-05 |
* |
|
|
| KS.1 |
505 |
145 |
5.312971 |
-3.257166 |
32.514332 |
1.773448e-05 |
* |
|
|
| XEC.4 |
192 |
148 |
5.041013 |
-12.123325 |
50.246651 |
2.492449e-09 |
|
|
|
| JN.1.39 |
1007 |
145 |
4.953672 |
-3.570287 |
33.140575 |
1.294242e-05 |
* |
|
|
| JN.1.4 |
8971 |
142 |
4.697798 |
4.697798 |
16.604405 |
5.053950e-02 |
* |
* |
|
|
Target sequence
, 241_C|T, 569_G|A, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4504_G|A, 4579_T|A, 5239_C|T, 6070_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8338_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15207_T|C, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A,
21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21928_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22884_T|G,
22895_G|C, 22896_T|C, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T,
25000_C|T, 25207_C|T, 25413_C|T, 25584_C|T, 25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26555_A|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27414_G|A, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28660_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29700_A|G, 29711
Case 81 (XFM): USA/NY-PRL-250422_82C10/2025
| Target: 4 samples | Number of changes: 152 | |
| BC: LF.7.9 + JN.1.2 | BC BR: 141-142 | BC BR coord: 28271 - 28272 |
| Direction L1: >> | Initial region span: 1-141,142-152 | Gap history (edge excluded): |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 2.93e-20 | Rec. model vs L2: 1.08e-155 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7.9 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.9 |
20 |
141 |
335.997567 |
NaN |
NaN |
NaN |
* |
* |
* |
| LF.7.6.2 |
17 |
120 |
235.094567 |
225.422215 |
-106.844430 |
9.456190e-49 |
|
|
|
| XFJ.1 |
59 |
141 |
201.101587 |
201.101587 |
-58.203174 |
2.592235e-59 |
|
* |
|
| XFJ.3 |
14 |
141 |
196.713834 |
196.713834 |
-49.427667 |
3.230674e-61 |
|
* |
|
| LF.7 |
58 |
120 |
147.547708 |
137.726937 |
68.546126 |
7.767148e-87 |
|
|
|
| LF.7.1 |
165 |
137 |
145.523314 |
140.666455 |
62.667090 |
1.469222e-85 |
|
|
|
| LF.7.9.3 |
20 |
120 |
144.070262 |
127.448147 |
89.103707 |
2.678464e-91 |
|
|
|
| LF.7.9.1 |
48 |
120 |
139.552185 |
121.413898 |
101.172203 |
6.410894e-94 |
|
|
|
| LF.7.2.1 |
67 |
120 |
135.262966 |
125.463460 |
93.073081 |
3.679690e-92 |
|
|
|
| XFG.3 |
480 |
81 |
133.717473 |
113.857393 |
116.285215 |
3.339276e-97 |
|
|
|
| |||||
JN.1.2 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.2 |
650 |
142 |
10.289153 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.7.5 |
427 |
145 |
9.488295 |
1.017429 |
19.965142 |
9.373865e-05 |
* |
|
|
| MC.13 |
807 |
142 |
9.173604 |
9.173604 |
3.652792 |
3.279153e-01 |
* |
* |
|
| LB.1.3 |
778 |
145 |
8.754250 |
0.257458 |
21.485083 |
4.383842e-05 |
* |
|
|
| KP.3.1.1 |
12013 |
142 |
8.470598 |
8.470598 |
5.058804 |
1.620258e-01 |
* |
* |
|
| BA.2.86.1 |
1343 |
142 |
8.370252 |
8.370252 |
5.259496 |
1.466070e-01 |
* |
* |
|
| GV.1 |
137 |
149 |
8.196587 |
-8.625094 |
39.250188 |
6.099860e-09 |
|
|
|
| MC.1 |
932 |
142 |
8.017999 |
8.017999 |
5.964002 |
1.033122e-01 |
* |
* |
|
| JN.1.1 |
3081 |
142 |
7.872476 |
7.872476 |
6.255047 |
8.892162e-02 |
* |
* |
|
| NY.3 |
209 |
145 |
7.737843 |
-0.752756 |
23.505512 |
1.596678e-05 |
* |
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4504_G|A, 4579_T|A, 5239_C|T, 6070_C|T, 6183_A|G, 7842_A|G, 7869_C|T, 7926_C|T, 8293_C|T, 8338_T|C,
8393_G|A, 8818_C|T, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 12892_G|A, 13339_T|C,
14408_C|T, 15207_T|C, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C,
21711_C|T, 21765_21770, 21928_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22884_T|G, 22895_G|C, 22896_T|C,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22930_T|A, 22942_T|A, 22986_C|T, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23933_A|G, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24990_C|T, 25000_C|T, 25207_C|T,
25413_C|T, 25584_C|T, 25844_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26555_A|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27414_G|A, 27807_C|T, 27810_T|C, 28271_A|T, 28311_C|T, 28362_28370, 28382_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28958_C|A, 29510_A|C, 29700_A|G, 29711, 29734_29759
Case 90 (XFA): USA/CA-LACPHL-AY11366/2025
| Target: 2 samples | Number of changes: 152 | |
| BC: MC.1.1 + XEC.4.1.4 | BC BR: 33-34 | BC BR coord: 13341 - 13342 |
| Direction L1: << | Initial region span: 1-33,38-152 | Gap history (edge excluded): 33-38 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 1.99e-02 | |
| Rec. model vs L1: 1.86e-143 | Rec. model vs L2: 1.09e-67 | |
| Flags: Model_1BP_Best | | |
MC.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.1.1 |
107 |
33 |
69.885223 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
34 |
68.900630 |
68.897784 |
-71.795568 |
3.734392e-01 |
* |
* |
|
| MC.24 |
831 |
30 |
67.572119 |
51.158381 |
-36.316761 |
7.376253e-09 |
|
|
|
| KP.2.3 |
4440 |
36 |
56.378437 |
51.699799 |
-37.399597 |
1.265770e-08 |
|
|
|
| MC.10.1 |
650 |
31 |
55.781856 |
49.360047 |
-32.720095 |
1.219286e-09 |
|
|
|
| MC.1.2 |
49 |
33 |
55.396785 |
55.396785 |
-44.793571 |
5.094164e-07 |
|
* |
|
| MC.5 |
19 |
30 |
55.118385 |
37.553171 |
-9.106341 |
9.104569e-15 |
|
|
|
| MC.11.3 |
19 |
30 |
55.118385 |
38.651783 |
-11.303566 |
2.721522e-14 |
|
|
|
| MC.11.1 |
26 |
30 |
55.118385 |
38.705850 |
-11.411700 |
2.875399e-14 |
|
|
|
| MC.23 |
64 |
30 |
55.086888 |
38.674353 |
-11.348707 |
2.790418e-14 |
|
|
|
| |||||
XEC.4.1.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.1.4 |
23 |
38 |
211.890620 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4.1 |
68 |
38 |
211.515947 |
206.194585 |
-158.389170 |
6.872893e-01 |
* |
* |
|
| XEC.4.1.1 |
12 |
38 |
209.689515 |
204.368153 |
-154.736307 |
1.108032e-01 |
* |
* |
|
| KP.3.1.1 |
12013 |
1 |
209.009269 |
140.111485 |
-26.222969 |
1.370215e-29 |
|
|
|
| PT.1 |
10 |
38 |
204.583917 |
193.257299 |
-132.514598 |
1.649563e-06 |
|
* |
|
| KP.3.3 |
1715 |
8 |
188.685496 |
151.324369 |
-48.648738 |
1.017188e-24 |
|
|
|
| XEC.4 |
192 |
8 |
179.701736 |
164.260081 |
-74.520162 |
4.216970e-19 |
|
|
|
| JN.1 |
17255 |
1 |
179.339972 |
134.971869 |
-15.943738 |
8.026295e-32 |
|
|
|
| XEC.8 |
592 |
8 |
174.889014 |
160.884994 |
-67.769988 |
1.442968e-20 |
|
|
|
| KP.3.1 |
1957 |
8 |
166.660686 |
128.072404 |
-2.144808 |
8.088783e-35 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3552_C|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13121_A|T, 13264_C|T, 13297_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16056_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21255_G|C, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T,
23403_A|G, 23423_C|T, 23525_C|T, 23584_T|C, 23598_A|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25470_A|T, 25584_C|T, 26060_C|T, 26097_A|G, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27294_C|T, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 27995_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28783_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29353_C|T, 29510_A|C, 29728_29776
Case 97 (XEV): OZ249780
| Target: 57 samples | Number of changes: 137 | |
| BC: XEC.18 + KP.2.3 + XEC.18 | BC BR: 5-6, 15-16 | BC BR coord: 896 - 897, 7841 - 7842 |
| Direction L1: << | Initial region span: 1-5,7-15,16-137 | Gap history (edge excluded): 5-16 -> 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 7.95e-01 | |
| Rec. model vs L1: 5.34e-23 | Rec. model vs L2: 1.32e-56 | |
| Flags: Model_2BP_Best | | |
XEC.18 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
5 |
8.722792 |
None |
None |
None |
* |
* |
* |
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
7 |
21.112612 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
7 |
12.510614 |
2.510614 |
18.978771 |
1.831876e-04 |
* |
* |
|
| KP.3.1.1 |
12013 |
6 |
10.499322 |
10.499322 |
3.001356 |
5.406409e-01 |
* |
* |
|
| MC.11.1 |
26 |
7 |
8.460749 |
-1.539251 |
27.078501 |
3.191562e-06 |
|
* |
|
| MC.10.1.5 |
19 |
7 |
8.460749 |
-1.539251 |
27.078501 |
3.191562e-06 |
|
* |
|
| KP.3.2.8 |
26 |
7 |
8.460749 |
-9.077943 |
42.155886 |
1.695989e-09 |
|
* |
|
| MC.10.1.3 |
10 |
7 |
8.460749 |
-1.539251 |
27.078501 |
3.191562e-06 |
|
* |
|
| MK.2 |
15 |
7 |
8.460749 |
-1.539251 |
27.078501 |
3.191562e-06 |
|
* |
|
| MC.36.2 |
24 |
7 |
8.460749 |
-1.539251 |
27.078501 |
3.191562e-06 |
|
* |
|
| MC.30.1 |
18 |
7 |
8.460749 |
-9.190911 |
42.381821 |
1.519325e-09 |
|
* |
|
| |||||
XEC.18 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
16 |
201.704901 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2 |
921 |
14 |
201.361877 |
205.824638 |
-123.649275 |
1.000170e-02 |
* |
|
|
| XEC.4 |
192 |
7 |
190.709428 |
197.054908 |
-106.109816 |
1.553500e-06 |
|
|
|
| MC.24.1 |
25 |
7 |
188.234502 |
189.348135 |
-90.696269 |
6.999585e-10 |
|
|
|
| XEC.31 |
66 |
16 |
188.115015 |
196.919675 |
-105.839350 |
1.357318e-06 |
|
* |
|
| XEC.2.2 |
273 |
23 |
187.745352 |
192.329145 |
-96.658291 |
1.378066e-08 |
|
|
|
| KP.3.1.1 |
12013 |
1 |
187.382552 |
176.883230 |
-65.766460 |
2.701417e-15 |
|
|
|
| KP.3.3 |
1715 |
7 |
184.110359 |
185.010026 |
-82.020052 |
9.125029e-12 |
|
|
|
| XEC.30 |
135 |
16 |
182.307800 |
190.738736 |
-93.477472 |
2.810229e-09 |
|
* |
|
| XEC.14 |
193 |
16 |
179.232730 |
187.979954 |
-87.959909 |
1.778643e-10 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 1684_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4699_T|G, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 9693_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 14925_C|T,
15714_C|T, 15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21711_C|T, 21738_T|C, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A,
22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T,
22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T,
24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C,
27798_G|T, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28378_G|T, 28770_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 97 (XEV): USA/CA-LACPHL-AY11866/2025
| Target: 57 samples | Number of changes: 154 | |
| BC: KP.2.3.12 + KP.3.3 | BC BR: 8-9 | BC BR coord: 942 - 943 |
| Direction L1: << | Initial region span: 1-8,10-154 | Gap history (edge excluded): 8-10 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.22e-135 | Rec. model vs L2: 6.04e-09 | |
| Flags: Model_2BP_Bad_L1_opp | | |
KP.2.3.12 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3.12 |
62 |
8 |
6.087460 |
NaN |
NaN |
NaN |
* |
* |
* |
| BA.5.1.1 |
4637 |
5 |
4.845359 |
-6.819697 |
29.639395 |
0.000002 |
|
|
|
| NM.1 |
41 |
7 |
2.729300 |
-7.270700 |
30.541400 |
0.000002 |
|
* |
|
| |||||
KP.3.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3 |
1715 |
10 |
218.905592 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
10 |
212.712221 |
196.437715 |
-76.875430 |
3.859395e-06 |
|
* |
|
| KP.3.1.1 |
12013 |
4 |
209.167576 |
204.813585 |
-93.627171 |
1.673923e-02 |
* |
|
|
| XEC.2 |
921 |
10 |
203.289361 |
193.289361 |
-70.578722 |
1.653833e-07 |
|
* |
|
| XEC.32 |
42 |
10 |
198.943693 |
182.657292 |
-49.314584 |
3.978963e-12 |
|
* |
|
| XEC.18 |
165 |
10 |
196.243094 |
179.962772 |
-43.925543 |
2.700957e-13 |
|
* |
|
| XEC.2.2 |
273 |
43 |
193.335885 |
164.785999 |
-13.571998 |
6.901245e-20 |
|
|
|
| JN.1 |
17255 |
10 |
192.908348 |
182.908348 |
-49.816695 |
5.134698e-12 |
|
* |
|
| KP.3.1 |
1957 |
10 |
188.361835 |
178.361835 |
-40.723670 |
5.425941e-14 |
|
* |
|
| MC.24.1 |
25 |
10 |
182.175940 |
172.175940 |
-28.351881 |
1.117799e-16 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 135, 241_C|T, 670_T|G, 835_C|T, 897_C|A, 942_G|A, 1684_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 11845_T|C, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14120_C|T,
14408_C|T, 15714_C|T, 15756_T|A, 16877_C|T, 16915_C|T, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T,
21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22113_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22227_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C, 22630_G|T, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G,
22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T,
25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26446_T|C, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28378_G|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29353_C|T, 29510_A|C, 29555_C|T, 29734_29759
Case 97 (XEV): USA/MN-MDH-46878/2025
| Target: 57 samples | Number of changes: 146 | |
| BC: MC.11.2 + XEC.18 | BC BR: 6-7 | BC BR coord: 2060 - 2061 |
| Direction L1: << | Initial region span: 1-4,9-146 | Gap history (edge excluded): 4-9 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.45e-127 | Rec. model vs L2: 1.18e-17 | |
| Flags: Model_2BP_Bad_L1_opp | | |
MC.11.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| MC.11.2 |
146 |
4 |
10.588478 |
NaN |
NaN |
NaN |
* |
* |
* |
| MU.2.1.1 |
10 |
4 |
9.006580 |
-10.993420 |
33.986841 |
0.204948 |
* |
* |
|
| MC.17 |
46 |
4 |
8.866818 |
-11.133182 |
34.266365 |
0.178173 |
* |
* |
|
| KP.2.3.4 |
70 |
4 |
8.506555 |
-11.493445 |
34.986889 |
0.124307 |
* |
* |
|
| NH.4 |
32 |
4 |
8.248894 |
-11.751106 |
35.502212 |
0.096328 |
* |
* |
|
| KP.2.6.1 |
49 |
4 |
8.110491 |
-11.889509 |
35.779017 |
0.083743 |
* |
* |
|
| LF.7.6 |
15 |
4 |
7.907967 |
-12.092033 |
36.184066 |
0.068563 |
* |
* |
|
| PH.1 |
63 |
4 |
7.778126 |
-12.221874 |
36.443748 |
0.060205 |
* |
* |
|
| PA.1 |
52 |
4 |
7.664742 |
-12.335258 |
36.670516 |
0.053665 |
* |
* |
|
| KP.2.28 |
22 |
4 |
7.524975 |
-12.475025 |
36.950050 |
0.046654 |
* |
* |
|
| |||||
XEC.18 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.18 |
165 |
9 |
259.750273 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4 |
192 |
9 |
259.326260 |
239.326260 |
-178.652519 |
5.658142e-07 |
|
* |
|
| MC.24.1 |
25 |
9 |
256.115434 |
250.016360 |
-200.032720 |
2.484745e-02 |
* |
* |
|
| XEC.8 |
592 |
9 |
253.563192 |
244.992634 |
-189.985269 |
1.641057e-04 |
* |
* |
|
| XEC.32 |
42 |
9 |
250.165396 |
230.165396 |
-160.330792 |
5.950267e-11 |
|
* |
|
| XEC.9 |
305 |
9 |
248.050341 |
228.050341 |
-156.100683 |
7.178002e-12 |
|
* |
|
| KP.3.3 |
1715 |
9 |
245.649443 |
225.649443 |
-151.298886 |
6.511737e-13 |
|
* |
|
| XEC.14 |
193 |
9 |
244.206949 |
224.206949 |
-148.413899 |
1.535116e-13 |
|
* |
|
| XEK.1 |
88 |
15 |
241.344673 |
207.363280 |
-114.726559 |
7.457998e-21 |
|
|
|
| XEC.31 |
66 |
17 |
241.260839 |
217.396492 |
-134.792983 |
1.692762e-16 |
|
|
|
|
Target sequence
, 186_C|T, 241_C|T, 670_T|G, 897_C|A, 1684_C|A, 2032_T|C, 2106_C|T, 2549_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T,
15756_T|A, 17410_C|T, 18163_A|G, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T,
21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26645_C|T, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 26879_T|G, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28378_G|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29604_T|C, 29734_29759
Case 97 (XEV): IGS-10285-CVDP-BE7CCBB1-AFB1-4DBD-B00A-60439A98F4F0
| Target: 57 samples | Number of changes: 146 | |
| BC: LF.7.7.2 + XEC.4 | BC BR: 5-6 | BC BR coord: 896 - 897 |
| Direction L1: << | Initial region span: 1-5,7-146 | Gap history (edge excluded): 5-7 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 1.46e-246 | Rec. model vs L2: 1.10e-13 | |
| Flags: Model_2BP_Bad_L1_opp | | |
LF.7.7.2 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.7.2 |
239 |
5 |
8.442286 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.46 |
308 |
5 |
6.836866 |
6.836866 |
-3.673733 |
0.200890 |
* |
* |
|
| JN.1.8.1 |
1498 |
5 |
6.829969 |
6.829969 |
-3.659938 |
0.199888 |
* |
* |
|
| BE.1.1.1 |
737 |
4 |
6.627662 |
-3.372338 |
16.744677 |
0.000007 |
|
* |
|
| JN.1.8 |
352 |
5 |
6.551767 |
6.551767 |
-3.103534 |
0.151072 |
* |
* |
|
| MC.2 |
396 |
5 |
6.319967 |
6.319967 |
-2.639935 |
0.120032 |
* |
* |
|
| KP.3.1.1 |
12013 |
6 |
6.297777 |
4.221627 |
1.556747 |
0.014699 |
* |
* |
|
| BA.5.3.1 |
660 |
4 |
6.175858 |
-3.824142 |
17.648285 |
0.000005 |
|
* |
|
| KP.1.1.3 |
979 |
5 |
5.992658 |
5.992658 |
-1.985317 |
0.086726 |
* |
* |
|
| JN.1.42 |
494 |
5 |
5.871571 |
5.871571 |
-1.743141 |
0.076536 |
* |
* |
|
| |||||
XEC.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
7 |
251.070415 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.18 |
165 |
16 |
246.224447 |
223.999714 |
-143.999429 |
2.070780e-05 |
* |
|
|
| KP.3.3 |
1715 |
7 |
245.514843 |
235.514843 |
-167.029685 |
2.075081e+00 |
* |
* |
|
| XEC.31 |
66 |
16 |
243.887029 |
213.736280 |
-123.472560 |
7.212755e-10 |
|
|
|
| XEK.1 |
88 |
14 |
243.290433 |
209.309039 |
-114.618078 |
8.636705e-12 |
|
|
|
| XEC.2 |
921 |
14 |
240.250424 |
222.851307 |
-141.702613 |
6.556852e-06 |
|
|
|
| MC.24.1 |
25 |
7 |
236.115434 |
226.115434 |
-148.230869 |
1.716591e-04 |
* |
* |
|
| XEC.32 |
42 |
7 |
230.165396 |
213.878995 |
-123.757990 |
8.338230e-10 |
|
* |
|
| XEC.14 |
193 |
16 |
229.292147 |
207.064018 |
-110.128035 |
9.148649e-13 |
|
|
|
| XEC.24 |
11 |
16 |
227.045082 |
204.832619 |
-105.665238 |
9.837399e-14 |
|
|
|
|
Target sequence
, 241_C|T, 337_C|T, 521_523, 670_T|G, 897_C|A, 1684_C|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5440_A|G, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
17410_C|T, 18163_A|G, 18457_C|T, 18492_A|G, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 20178_C|T, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21711_C|T, 21738_T|C, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23593_G|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25856_A|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A,
28311_C|T, 28362_28370, 28378_G|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29734_29759
Case 102 (XEW): USA/2025CV0191/2025
| Target: 19 samples | Number of changes: 146 | |
| BC: AY.36 + XEC.4 | BC BR: 3-4 | BC BR coord: 570 - 571 |
| Direction L1: << | Initial region span: 1-3,5-146 | Gap history (edge excluded): 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 0.00e+00 | Rec. model vs L2: 3.86e+02 | |
| Flags: Model_2BP_Bad_L1_opp | | |
AY.36 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| AY.36 |
5867 |
3 |
4.804577 |
NaN |
NaN |
NaN |
* |
* |
* |
| AY.14 |
7575 |
3 |
4.312293 |
4.312293 |
1.375413 |
0.609571 |
* |
* |
|
| XBB.1.5.12 |
581 |
4 |
3.694368 |
2.612646 |
4.774707 |
0.111917 |
* |
* |
|
| LP.8.1.1 |
2345 |
4 |
3.683419 |
2.613291 |
4.773417 |
0.111917 |
* |
* |
|
| BA.5.2.35 |
1368 |
4 |
3.391462 |
2.304563 |
5.390873 |
0.082085 |
* |
* |
|
| BA.4.2 |
1792 |
4 |
3.249850 |
2.162952 |
5.674097 |
0.071361 |
* |
* |
|
| KP.3.1 |
1957 |
4 |
3.066618 |
1.993612 |
6.012777 |
0.060205 |
* |
* |
|
| B.1.258 |
3961 |
3 |
1.969245 |
1.969245 |
6.061510 |
0.058719 |
* |
* |
|
| BA.5.2.20 |
5259 |
4 |
1.791525 |
0.705578 |
8.588845 |
0.016573 |
* |
* |
|
| EG.5.1.1 |
4177 |
4 |
1.734324 |
0.656322 |
8.687355 |
0.015764 |
* |
* |
|
| |||||
XEC.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4 |
192 |
5 |
253.940174 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.8 |
592 |
5 |
249.765041 |
240.967562 |
-169.935124 |
1.560756e-02 |
* |
* |
|
| KP.3.3 |
1715 |
5 |
240.993675 |
238.469257 |
-164.938515 |
1.281146e-03 |
* |
* |
|
| XEC.2 |
921 |
5 |
233.434693 |
230.894237 |
-149.788474 |
6.573824e-07 |
|
* |
|
| KP.3.1.1 |
12013 |
5 |
222.724692 |
220.189203 |
-128.378406 |
1.474673e-11 |
|
* |
|
| MC.24.1 |
25 |
5 |
218.688082 |
216.106804 |
-120.213609 |
2.480862e-13 |
|
* |
|
| XEC.32 |
42 |
5 |
212.649469 |
203.822612 |
-95.645225 |
1.152037e-18 |
|
* |
|
| XEC.15 |
127 |
5 |
209.861491 |
201.050507 |
-90.101014 |
7.182890e-20 |
|
* |
|
| XEC.30 |
135 |
5 |
207.355932 |
198.551661 |
-85.103323 |
5.896075e-21 |
|
* |
|
| XEC.9 |
305 |
5 |
205.593729 |
196.766872 |
-81.533745 |
9.893441e-22 |
|
* |
|
|
Target sequence
, 186_C|T, 241_C|T, 570_A|G, 670_T|G, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7113_C|T, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11575_C|T, 11727_G|A, 12616_C|T, 12789_C|T, 12815_C|T, 12880_C|T, 13121_A|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 17410_C|T,
18163_A|G, 18492_A|G, 18647_C|T, 18657_C|T, 18894_C|T, 19716_C|T, 19955_C|T, 20055_A|G, 21608_.|TCATGCCGCTGT, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21711_C|T, 21738_T|C,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C,
22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23277_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23595_C|T, 23599_T|G, 23604_C|G, 23638_C|T, 23854_C|A, 23948_G|T, 24376_T|C, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T,
26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27382_G|C, 27383_A|T, 27384_T|C, 27797_A|G, 27807_C|T, 27810_T|C, 28077_G|T,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C
Case 122 (XFN): OZ261586
| Target: 27 samples | Number of changes: 134 | |
| BC: JN.1.16.1 + KP.3.3.10 | BC BR: 116-117 | BC BR coord: 27263 - 27264 |
| Direction L1: >> | Initial region span: 1-116,118-134 | Gap history (edge excluded): 116-118 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.61e-19 | Rec. model vs L2: 1.60e-29 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
116 |
139.541873 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
132 |
138.573741 |
132.335787 |
13.328426 |
7.428622e-04 |
* |
|
|
| KP.3 |
769 |
116 |
136.593561 |
136.593561 |
4.812877 |
5.260206e-02 |
* |
* |
|
| KP.2.3 |
4440 |
123 |
131.236252 |
121.004250 |
35.991499 |
8.919731e-09 |
|
|
|
| KP.3.1 |
1957 |
116 |
128.702092 |
128.702092 |
20.595817 |
1.959963e-05 |
* |
* |
|
| XEC.32 |
42 |
132 |
128.224644 |
112.014310 |
53.971380 |
1.111845e-12 |
|
|
|
| MC.24.1 |
25 |
125 |
126.665191 |
121.201324 |
35.597352 |
1.084025e-08 |
|
|
|
| KP.3.1.1 |
12013 |
134 |
126.256683 |
122.182326 |
33.635347 |
2.888337e-08 |
|
|
|
| XEC.39 |
155 |
132 |
122.125070 |
115.892137 |
46.215726 |
5.357171e-11 |
|
|
|
| KP.2 |
1589 |
116 |
120.642020 |
120.642020 |
36.715959 |
6.192048e-09 |
|
* |
|
| |||||
KP.3.3.10 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3.10 |
55 |
118 |
20.410343 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
118 |
17.696525 |
7.696525 |
32.606951 |
6.620495e-02 |
* |
* |
|
| XEC.32 |
42 |
118 |
17.530195 |
7.530195 |
32.939610 |
5.613476e-02 |
* |
* |
|
| KP.3.1.1 |
12013 |
118 |
14.074357 |
4.074357 |
39.851287 |
1.773146e-03 |
* |
* |
|
| LP.8.1 |
1124 |
118 |
13.890711 |
3.890711 |
40.218578 |
1.473669e-03 |
* |
* |
|
| JN.1.11.1 |
226 |
125 |
10.949753 |
0.471441 |
47.057119 |
4.820730e-05 |
* |
|
|
| KR.1.4 |
24 |
131 |
10.910774 |
-24.624117 |
97.248234 |
6.088255e-16 |
|
|
|
| MC.8 |
93 |
131 |
8.361014 |
-20.466434 |
88.932868 |
3.900838e-14 |
|
|
|
| BQ.1.1.30 |
19 |
132 |
7.751354 |
-88.464439 |
224.928877 |
1.145864e-43 |
|
|
|
| XEK.2 |
67 |
118 |
7.581529 |
-2.418471 |
52.836942 |
2.679179e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 13517_C|T, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T,
18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G,
22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T,
25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28600_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ271486
| Target: 27 samples | Number of changes: 135 | |
| BC: KP.2.3 + XEC.4.1 + KP.2.3 | BC BR: 123-124, 131-132 | BC BR coord: 28271 - 28272, 28883 - 28884 |
| Direction L1: >> | Initial region span: 1-123,124-126,132-135 | Gap history (edge excluded): 123-132 -> 126-132 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.63e-03 | |
| Rec. model vs L1: 4.36e-09 | Rec. model vs L2: 1.48e-44 | |
| Flags: Model_2BP_Best | | |
KP.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
123 |
133.652410 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1.16.1 |
466 |
116 |
128.041960 |
123.352610 |
61.294779 |
2.479596e-07 |
|
|
|
| KP.3.3 |
1715 |
125 |
125.747112 |
114.990543 |
78.018914 |
5.774410e-11 |
|
|
|
| KP.3 |
769 |
116 |
125.731619 |
120.990329 |
66.019342 |
2.329563e-08 |
|
|
|
| KP.2 |
1589 |
116 |
120.652034 |
125.142993 |
57.714014 |
1.485142e-06 |
|
|
|
| MC.24.1 |
25 |
125 |
115.041345 |
104.833621 |
98.332759 |
2.245159e-15 |
|
|
|
| XEC.32 |
42 |
125 |
114.306283 |
103.719070 |
100.561861 |
7.362220e-16 |
|
|
|
| JN.1.4 |
8971 |
116 |
112.685369 |
116.216513 |
75.566974 |
1.965705e-10 |
|
|
|
| KP.3.1.1 |
12013 |
116 |
111.034729 |
115.401754 |
77.196492 |
8.700983e-11 |
|
|
|
| XEC.39 |
155 |
125 |
110.386042 |
99.718248 |
108.563504 |
1.348438e-17 |
|
|
|
| |||||
XEC.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.1 |
68 |
126 |
8.142610 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3.8 |
15 |
125 |
6.591671 |
-7.964799 |
39.929598 |
4.483978e-06 |
|
* |
|
| XEC.23 |
142 |
125 |
6.591671 |
-7.964799 |
39.929598 |
4.483978e-06 |
|
* |
|
| XEC.4.3 |
10 |
125 |
6.591671 |
-13.567013 |
51.134026 |
1.658114e-08 |
|
* |
|
| XEC.24.1 |
18 |
125 |
6.591671 |
-14.167917 |
52.335834 |
9.054536e-09 |
|
* |
|
| NP.1 |
16 |
125 |
6.591671 |
-7.964799 |
39.929598 |
4.483978e-06 |
|
* |
|
| XEK.6 |
23 |
125 |
6.591671 |
-7.964799 |
39.929598 |
4.483978e-06 |
|
* |
|
| XEC.2.3.1 |
19 |
125 |
6.591671 |
-7.964799 |
39.929598 |
4.483978e-06 |
|
* |
|
| XEP.1 |
13 |
125 |
6.591671 |
-14.409436 |
52.818873 |
7.122550e-09 |
|
* |
|
| XEK.1 |
88 |
125 |
6.591671 |
-7.918279 |
39.836558 |
4.690366e-06 |
|
* |
|
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
132 |
4.91084 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3695_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G,
18492_A|G, 18781_G|A, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G,
22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G,
22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T,
25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28462_C|T, 28516_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ276300
| Target: 27 samples | Number of changes: 134 | |
| BC: KP.2.3 + XEC.4.1 + KP.2.3 | BC BR: 122-123, 130-131 | BC BR coord: 28271 - 28272, 28883 - 28884 |
| Direction L1: >> | Initial region span: 1-122,123-125,131-134 | Gap history (edge excluded): 122-131 -> 125-131 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.63e-03 | |
| Rec. model vs L1: 4.39e-09 | Rec. model vs L2: 1.65e-44 | |
| Flags: Model_2BP_Best | | |
KP.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
122 |
137.290877 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
124 |
129.194732 |
118.438164 |
71.123672 |
4.799137e-11 |
|
|
|
| KP.3 |
769 |
115 |
128.981091 |
124.239801 |
59.520397 |
1.585153e-08 |
|
|
|
| JN.1.16.1 |
466 |
115 |
127.786931 |
123.097581 |
61.804837 |
5.069620e-09 |
|
|
|
| KP.2 |
1589 |
115 |
123.826221 |
128.317179 |
51.365642 |
9.328700e-07 |
|
|
|
| MC.24.1 |
25 |
124 |
118.708832 |
108.501108 |
90.997784 |
2.313534e-15 |
|
|
|
| XEC.32 |
42 |
124 |
118.055414 |
107.468201 |
93.063599 |
8.259479e-16 |
|
|
|
| JN.1.4 |
8971 |
115 |
116.256724 |
119.787868 |
68.424264 |
1.851231e-10 |
|
|
|
| KP.3.1.1 |
12013 |
115 |
114.609095 |
118.976120 |
70.047760 |
8.194277e-11 |
|
|
|
| XEC.39 |
155 |
124 |
113.987950 |
103.320155 |
101.359689 |
1.302059e-17 |
|
|
|
| |||||
XEC.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.1 |
68 |
125 |
8.142610 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3.4 |
292 |
124 |
6.591671 |
-7.919257 |
37.838514 |
4.690366e-06 |
|
* |
|
| XEC.24.1 |
18 |
124 |
6.591671 |
-14.167917 |
50.335834 |
9.054536e-09 |
|
* |
|
| NP.1 |
16 |
124 |
6.591671 |
-7.964799 |
37.929598 |
4.483978e-06 |
|
* |
|
| XEC.2.3.1 |
19 |
124 |
6.591671 |
-7.964799 |
37.929598 |
4.483978e-06 |
|
* |
|
| XEK.1 |
88 |
124 |
6.591671 |
-7.918279 |
37.836558 |
4.690366e-06 |
|
* |
|
| XEC.11.1.1 |
12 |
124 |
6.591671 |
-7.964799 |
37.929598 |
4.483978e-06 |
|
* |
|
| XEK.2 |
67 |
124 |
6.591671 |
-7.903241 |
37.806482 |
4.761252e-06 |
|
* |
|
| XEP.1 |
13 |
124 |
6.591671 |
-14.409436 |
50.818873 |
7.122550e-09 |
|
* |
|
| XEK.6 |
23 |
124 |
6.591671 |
-7.964799 |
37.929598 |
4.483978e-06 |
|
* |
|
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
131 |
4.91084 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 3695_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G, 9534_C|T,
10029_C|T, 10198_C|T, 10228_C|T, 11042_G|T, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18781_G|A,
18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A,
22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G, 22895_G|C,
22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T,
25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28462_C|T, 28516_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ276328
| Target: 27 samples | Number of changes: 135 | |
| BC: KP.2.3 + XEC.4.1 + KP.2.3 | BC BR: 123-124, 131-132 | BC BR coord: 28271 - 28272, 28883 - 28884 |
| Direction L1: >> | Initial region span: 1-123,124-126,132-135 | Gap history (edge excluded): 123-132 -> 126-132 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.63e-03 | |
| Rec. model vs L1: 4.36e-09 | Rec. model vs L2: 1.66e-44 | |
| Flags: Model_2BP_Best | | |
KP.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
123 |
133.669686 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
125 |
125.611888 |
114.855319 |
78.289361 |
4.970080e-11 |
|
|
|
| KP.3 |
769 |
116 |
125.434961 |
120.693671 |
66.612657 |
1.708611e-08 |
|
|
|
| JN.1.16.1 |
466 |
116 |
124.192687 |
119.503337 |
68.993325 |
5.197958e-09 |
|
|
|
| KP.2 |
1589 |
116 |
120.275623 |
124.766581 |
58.466838 |
1.000511e-06 |
|
|
|
| MC.24.1 |
25 |
125 |
115.066811 |
104.859087 |
98.281825 |
2.267723e-15 |
|
|
|
| XEC.32 |
42 |
125 |
114.413394 |
103.826180 |
100.347639 |
8.055552e-16 |
|
|
|
| JN.1.4 |
8971 |
116 |
112.653194 |
116.184339 |
75.631323 |
1.879209e-10 |
|
|
|
| KP.3.1.1 |
12013 |
116 |
111.026735 |
115.393760 |
77.212480 |
8.528692e-11 |
|
|
|
| XEC.39 |
155 |
125 |
110.411509 |
99.743714 |
108.512571 |
1.361990e-17 |
|
|
|
| |||||
XEC.4.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.1 |
68 |
126 |
8.142610 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.4.3 |
10 |
125 |
6.591671 |
-13.567013 |
53.134026 |
1.658114e-08 |
|
* |
|
| XEC.18.3 |
13 |
125 |
6.591671 |
-13.646512 |
53.293025 |
1.530632e-08 |
|
* |
|
| KP.3.3.8 |
15 |
125 |
6.591671 |
-7.964799 |
41.929598 |
4.483978e-06 |
|
* |
|
| XEC.23 |
142 |
125 |
6.591671 |
-7.964799 |
41.929598 |
4.483978e-06 |
|
* |
|
| XEC.24.1 |
18 |
125 |
6.591671 |
-14.167917 |
54.335834 |
9.054536e-09 |
|
* |
|
| NP.1 |
16 |
125 |
6.591671 |
-7.964799 |
41.929598 |
4.483978e-06 |
|
* |
|
| XEK.6 |
23 |
125 |
6.591671 |
-7.964799 |
41.929598 |
4.483978e-06 |
|
* |
|
| XEC.2.3.1 |
19 |
125 |
6.591671 |
-7.964799 |
41.929598 |
4.483978e-06 |
|
* |
|
| XEP.1 |
13 |
125 |
6.591671 |
-14.409436 |
54.818873 |
7.122550e-09 |
|
* |
|
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
132 |
4.91084 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3695_C|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G, 9534_C|T, 10029_C|T,
10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G,
18781_G|A, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G,
22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T,
25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T,
27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28462_C|T, 28516_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ284692
| Target: 27 samples | Number of changes: 152 | |
| BC: KP.2.3 + XEC.32 + KP.2.3 | BC BR: 140-141, 148-149 | BC BR coord: 28271 - 28272, 28957 - 28958 |
| Direction L1: >> | Initial region span: 1-140,141-148,149-152 | Gap history (edge excluded): 140-149 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.25e-05 | |
| Rec. model vs L1: 2.34e-14 | Rec. model vs L2: 1.43e-12 | |
| Flags: Model_2BP_Best | | |
KP.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
140 |
156.531125 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3 |
769 |
150 |
151.054609 |
145.961926 |
38.076148 |
1.892873e-07 |
|
|
|
| KP.3.1.1 |
12013 |
152 |
147.503128 |
146.285899 |
37.428202 |
2.619794e-07 |
|
|
|
| JN.1.16.1 |
466 |
133 |
143.561260 |
138.871909 |
52.256181 |
1.577515e-10 |
|
|
|
| KP.3.3 |
1715 |
150 |
140.815299 |
128.413391 |
73.173219 |
4.543858e-15 |
|
|
|
| KP.2 |
1589 |
133 |
140.361372 |
144.852331 |
40.295339 |
6.238132e-08 |
|
|
|
| XEC.2 |
921 |
150 |
139.513966 |
127.153776 |
75.692448 |
1.288884e-15 |
|
|
|
| LF.7 |
58 |
108 |
138.501975 |
130.720924 |
68.558152 |
4.554844e-14 |
|
|
|
| XEC.32 |
42 |
150 |
137.785198 |
110.510255 |
108.979490 |
7.609954e-23 |
|
|
|
| JN.1 |
17255 |
133 |
134.267447 |
138.417538 |
53.164925 |
1.005868e-10 |
|
|
|
| |||||
XEC.32 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.32 |
42 |
141 |
18.594804 |
NaN |
NaN |
NaN |
* |
* |
* |
| XBB.2.6 |
343 |
142 |
6.614007 |
-3.385993 |
26.771986 |
2.845819e-10 |
|
* |
|
| XEC.21 |
38 |
145 |
6.222233 |
3.592608 |
12.814784 |
3.059023e-07 |
|
|
|
| XEC.24.1 |
18 |
145 |
6.222233 |
-2.610510 |
25.221020 |
6.177113e-10 |
|
|
|
| XEC.2.3.1 |
19 |
145 |
6.222233 |
3.592608 |
12.814784 |
3.059023e-07 |
|
|
|
| XEC.2.6 |
13 |
145 |
6.222233 |
-3.851256 |
27.702511 |
1.787559e-10 |
|
|
|
| XEC.22 |
23 |
145 |
6.222233 |
3.592608 |
12.814784 |
3.059023e-07 |
|
|
|
| XEC.23 |
142 |
145 |
6.222233 |
3.592608 |
12.814784 |
3.059023e-07 |
|
|
|
| XEC.24 |
11 |
145 |
6.222233 |
-2.610510 |
25.221020 |
6.177113e-10 |
|
|
|
| XEC.25 |
13 |
145 |
6.222233 |
3.512565 |
12.974870 |
2.823834e-07 |
|
|
|
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
149 |
4.91084 |
None |
None |
None |
* |
* |
* |
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 4885_T|C, 6183_A|G, 7842_A|G, 7869_C|T, 8293_C|T, 8393_G|A, 9344_C|T,
9365_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11681_C|T, 11727_G|A, 12193_T|C, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C,
14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641,
21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A,
22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G, 22895_G|C, 22896_T|A,
22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T,
23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23580_G|C, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T,
25006_C|T, 25207_C|T, 25584_C|T, 25683_T|C, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28600_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ284784
| Target: 27 samples | Number of changes: 149 | |
| BC: KP.2.3 + XEC.4.1.4 + KP.2.3 | BC BR: 3-4, 7-8 | BC BR coord: 241 - 242, 2789 - 2790 |
| Direction L1: << | Initial region span: 1-3,5-7,8-149 | Gap history (edge excluded): 3-8 -> 3-5 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 4.80e-01 | |
| Rec. model vs L1: 5.44e-09 | Rec. model vs L2: 1.90e-51 | |
| Flags: Model_2BP_Best | | |
KP.2.3 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
3 |
3.778452 |
None |
None |
None |
* |
* |
* |
| |||||
XEC.4.1.4 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| XEC.4.1.4 |
23 |
5 |
11.000655 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.13 |
30 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.32 |
42 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.8.1 |
12 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.18.3 |
13 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.18.2 |
10 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.17 |
13 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.16 |
23 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.4.7 |
13 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| XEC.35.1 |
28 |
5 |
11.000655 |
1.000655 |
5.998691 |
1.0 |
* |
* |
|
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
8 |
177.246779 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
5 |
174.719309 |
177.550075 |
-37.100151 |
3.096183e-02 |
* |
|
|
| KP.3 |
769 |
8 |
170.987129 |
175.600349 |
-33.200698 |
4.405066e-03 |
* |
* |
|
| KP.3.3 |
1715 |
5 |
170.138538 |
168.366230 |
-18.732459 |
3.175644e-06 |
|
|
|
| KP.2 |
1589 |
8 |
168.951364 |
173.609055 |
-29.218110 |
6.021524e-04 |
* |
* |
|
| XEC.32 |
42 |
5 |
167.115100 |
158.104405 |
1.791191 |
1.111656e-10 |
|
|
|
| KP.3.1 |
1957 |
5 |
164.156223 |
165.619134 |
-13.238267 |
2.040298e-07 |
|
|
|
| XEC.14 |
193 |
6 |
163.084371 |
157.250667 |
3.498666 |
4.727687e-11 |
|
|
|
| JN.1 |
17255 |
8 |
162.512873 |
165.522859 |
-13.045717 |
1.855391e-07 |
|
* |
|
| JN.1.16.1 |
466 |
8 |
162.165099 |
166.493511 |
-14.987022 |
4.894419e-07 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 375_A|G, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T,
9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16173_C|T, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T,
21765_21770, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C,
22578_G|A, 22594_C|T, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A,
22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C,
23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T,
25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C,
28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28600_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ286973
| Target: 27 samples | Number of changes: 149 | |
| BC: JN.1.16.1 + KP.3.3.10 | BC BR: 129-130 | BC BR coord: 27263 - 27264 |
| Direction L1: >> | Initial region span: 1-129,132-149 | Gap history (edge excluded): 129-132 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.63e-19 | Rec. model vs L2: 1.14e-33 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
129 |
172.578324 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.32 |
42 |
147 |
167.785198 |
160.017457 |
-34.034915 |
3.492125e-06 |
|
|
|
| MC.24.1 |
25 |
129 |
166.419119 |
166.419119 |
-46.838238 |
2.112253e-03 |
* |
* |
|
| XEC.39 |
155 |
129 |
165.916189 |
165.916189 |
-45.832379 |
1.274757e-03 |
* |
* |
|
| KP.3 |
769 |
129 |
165.747551 |
165.747551 |
-45.495103 |
1.080858e-03 |
* |
* |
|
| KP.3.1.1 |
12013 |
149 |
165.604646 |
159.220535 |
-32.441069 |
1.576978e-06 |
|
|
|
| KP.3.3 |
1715 |
129 |
164.503789 |
164.503789 |
-43.007578 |
3.112233e-04 |
* |
* |
|
| XEC.14 |
193 |
129 |
161.700616 |
161.700616 |
-37.401232 |
1.883112e-05 |
* |
* |
|
| KP.2 |
1589 |
137 |
160.360936 |
160.095924 |
-34.191849 |
3.782974e-06 |
|
|
|
| XEC.8 |
592 |
147 |
155.612318 |
146.105693 |
-6.211385 |
3.177266e-12 |
|
|
|
| |||||
KP.3.3.10 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3.10 |
55 |
132 |
21.967750 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
132 |
19.186886 |
-0.813114 |
45.626228 |
6.172909e-02 |
* |
* |
|
| XEC.32 |
42 |
132 |
19.087602 |
-0.912398 |
45.824796 |
5.613476e-02 |
* |
* |
|
| KP.3.1.1 |
12013 |
131 |
16.384112 |
6.384112 |
31.231776 |
8.268184e+01 |
* |
* |
|
| LP.8.1 |
1124 |
132 |
15.415830 |
-4.584170 |
53.168340 |
1.422983e-03 |
* |
* |
|
| JN.1.11.1 |
226 |
139 |
12.160138 |
-8.318174 |
60.636348 |
3.397111e-05 |
* |
|
|
| KR.1.4 |
24 |
146 |
10.910774 |
-33.066710 |
110.133420 |
6.088255e-16 |
|
|
|
| XEC.8 |
592 |
131 |
10.694884 |
0.694884 |
42.610233 |
2.794310e-01 |
* |
* |
|
| XEC.2 |
921 |
131 |
10.238426 |
0.238426 |
43.523149 |
1.772844e-01 |
* |
* |
|
| XEC.17 |
13 |
132 |
9.123188 |
-10.876812 |
65.753625 |
2.639292e-06 |
|
* |
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G,
9534_C|T, 10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C,
17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20914_A|C, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770,
21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C,
22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G,
22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G,
23423_C|T, 23525_C|T, 23557_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T,
26270_C|T, 26529_G|C, 26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27323_C|T, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T,
28291_C|A, 28311_C|T, 28362_28370, 28600_T|C, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ288044
| Target: 27 samples | Number of changes: 146 | |
| BC: JN.1.16.1 + KP.3.3.10 | BC BR: 127-128 | BC BR coord: 27263 - 27264 |
| Direction L1: >> | Initial region span: 1-127,135-146 | Gap history (edge excluded): 127-135 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.61e-19 | Rec. model vs L2: 1.77e-40 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
127 |
178.279539 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
144 |
177.577207 |
169.847037 |
-53.694074 |
2.171331e-04 |
* |
|
|
| XEC.16 |
23 |
144 |
172.335345 |
164.532019 |
-43.064037 |
1.067704e-06 |
|
|
|
| XEC.39 |
155 |
144 |
170.406722 |
162.642357 |
-39.284713 |
1.613000e-07 |
|
|
|
| MC.24.1 |
25 |
144 |
168.792999 |
162.297526 |
-38.595051 |
1.148085e-07 |
|
|
|
| KP.2.3 |
4440 |
133 |
167.817671 |
158.350575 |
-30.701150 |
2.210604e-09 |
|
|
|
| KP.3.1 |
1957 |
146 |
166.569726 |
157.542921 |
-29.085842 |
9.883344e-10 |
|
|
|
| KP.2 |
1589 |
127 |
166.185206 |
166.185206 |
-46.370413 |
5.587380e-06 |
|
* |
|
| XEC.14 |
193 |
144 |
165.123157 |
157.646073 |
-29.292146 |
1.092278e-09 |
|
|
|
| KP.3.1.1 |
12013 |
146 |
163.310339 |
157.002670 |
-28.005340 |
5.759502e-10 |
|
|
|
| |||||
KP.3.3.10 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3.10 |
55 |
135 |
23.206758 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
135 |
20.429564 |
9.186886 |
23.626228 |
6.172909e-02 |
* |
* |
|
| KP.3.1 |
1957 |
129 |
19.026805 |
9.026805 |
23.946390 |
5.260206e-02 |
* |
|
|
| KP.3.1.1 |
12013 |
129 |
16.307669 |
6.307669 |
29.384662 |
3.482517e-03 |
* |
|
|
| KR.1.4 |
24 |
143 |
10.910774 |
-23.066710 |
88.133420 |
6.088255e-16 |
|
|
|
| XEC.32 |
42 |
135 |
10.362196 |
-5.914595 |
53.829189 |
1.708611e-08 |
|
* |
|
| MR.1 |
17 |
135 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
| XEC.16 |
23 |
135 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
| MR.2 |
14 |
135 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
| XEC.17 |
13 |
135 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G, 9430_C|T, 9534_C|T,
10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T,
18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20168_A|C, 21607_.|GNNNNNNNNNNN, 21618_C|T, 21622_C|T, 21624_G|C, 21627_C|A, 21633_21641, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T,
21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C,
22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22770_G|A, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C,
22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T,
23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C,
26577_C|G, 26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 27828_C|T, 28271_A|T, 28291_C|A, 28311_C|T,
28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ288054
| Target: 27 samples | Number of changes: 136 | |
| BC: JN.1.16.1 + KP.3.3.10 | BC BR: 117-118 | BC BR coord: 27263 - 27264 |
| Direction L1: >> | Initial region span: 1-117,125-136 | Gap history (edge excluded): 117-125 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 3.61e-19 | Rec. model vs L2: 9.95e-36 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
117 |
142.396306 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
134 |
129.836921 |
122.106751 |
35.786497 |
1.542286e-09 |
|
|
|
| KP.3.1 |
1957 |
136 |
127.271158 |
118.244353 |
43.511294 |
3.249288e-11 |
|
|
|
| KP.2 |
1589 |
117 |
121.319053 |
121.319053 |
37.361894 |
7.034671e-10 |
|
* |
|
| KP.3.1.1 |
12013 |
136 |
117.671911 |
111.364242 |
57.271515 |
3.340737e-14 |
|
|
|
| MC.24.1 |
25 |
134 |
117.528579 |
111.033106 |
57.933789 |
2.401735e-14 |
|
|
|
| KP.3 |
769 |
117 |
116.660774 |
116.660774 |
46.678452 |
6.659345e-12 |
|
* |
|
| XEC.16 |
23 |
134 |
114.909623 |
107.106296 |
65.787408 |
4.717889e-16 |
|
|
|
| KP.2.3 |
4440 |
123 |
110.466941 |
100.999845 |
78.000310 |
1.052883e-18 |
|
|
|
| JN.1 |
17255 |
117 |
110.270646 |
110.270646 |
59.458708 |
1.117609e-14 |
|
* |
|
| |||||
KP.3.3.10 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3.10 |
55 |
125 |
23.206758 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
125 |
20.429564 |
9.186886 |
23.626228 |
6.172909e-02 |
* |
* |
|
| KP.3.1 |
1957 |
119 |
19.026805 |
9.026805 |
23.946390 |
5.260206e-02 |
* |
|
|
| KP.3.1.1 |
12013 |
119 |
16.307669 |
6.307669 |
29.384662 |
3.482517e-03 |
* |
|
|
| KR.1.4 |
24 |
133 |
10.910774 |
-23.066710 |
88.133420 |
6.088255e-16 |
|
|
|
| XEC.32 |
42 |
125 |
10.362196 |
-5.914595 |
53.829189 |
1.708611e-08 |
|
* |
|
| MR.1 |
17 |
125 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
| XEC.16 |
23 |
125 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
| MR.2 |
14 |
125 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
| XEC.17 |
13 |
125 |
10.362196 |
-0.876812 |
43.753625 |
2.639292e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G, 9430_C|T, 9534_C|T, 10029_C|T,
10198_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G,
18894_C|T, 19955_C|T, 20055_A|G, 20168_A|C, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T,
22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G, 22895_G|C,
22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G,
23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23629_T|C, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T,
25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C,
27807_C|T, 27810_T|C, 27828_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ288074
| Target: 27 samples | Number of changes: 146 | |
| BC: KP.3.1.1 + LF.7.9 + KP.3.1.1 | BC BR: 34-35, 49-50 | BC BR coord: 12906 - 12907, 21710 - 21711 |
| Direction L1: << | Initial region span: 1-34,35-49,50-146 | Gap history (edge excluded): 34-50 -> |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 2BP vs 1BP: 9.53e-19 | |
| Rec. model vs L1: 1.50e-63 | Rec. model vs L2: 3.88e-99 | |
| Flags: Model_2BP_Best | | |
KP.3.1.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
34 |
21.881532 |
None |
None |
None |
* |
* |
* |
| |||||
LF.7.9 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| LF.7.9 |
20 |
35 |
17.551727 |
NaN |
NaN |
NaN |
* |
* |
* |
| PY.4 |
10 |
37 |
13.961332 |
9.541598 |
38.916805 |
3.321247e-04 |
* |
|
|
| PL.1.1 |
12 |
48 |
11.544410 |
3.156059 |
51.687881 |
5.601843e-07 |
|
|
|
| LF.7.1.10 |
13 |
48 |
11.464368 |
-3.517815 |
65.035631 |
7.069932e-10 |
|
|
|
| XFG.2 |
500 |
48 |
11.370057 |
-6.264129 |
70.528257 |
4.542311e-11 |
|
|
|
| LF.7.3.5 |
16 |
48 |
11.256728 |
-4.542545 |
67.085090 |
2.536667e-10 |
|
|
|
| XFJ.1 |
59 |
48 |
11.204542 |
-4.292347 |
66.584694 |
3.273471e-10 |
|
|
|
| PY.2 |
17 |
48 |
11.196104 |
-4.432754 |
66.865509 |
2.831626e-10 |
|
|
|
| XFG.3.1 |
87 |
48 |
11.161286 |
0.649296 |
56.701408 |
4.575339e-08 |
|
|
|
| XFG.3 |
480 |
48 |
10.946573 |
-4.000604 |
66.001207 |
4.374757e-10 |
|
|
|
| |||||
KP.3.1.1 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.1.1 |
12013 |
50 |
143.744428 |
NaN |
NaN |
NaN |
* |
* |
* |
| PG.3 |
31 |
50 |
140.430068 |
155.840527 |
-33.681053 |
5.628964e-05 |
* |
* |
|
| KP.2.3 |
4440 |
50 |
139.220879 |
149.072326 |
-20.144653 |
6.460332e-08 |
|
* |
|
| XEC.32 |
42 |
60 |
136.702794 |
140.012977 |
-2.025953 |
7.546026e-12 |
|
|
|
| KP.3.3.2 |
217 |
50 |
136.312808 |
126.824332 |
24.351335 |
1.410503e-17 |
|
* |
|
| KP.3.1 |
1957 |
48 |
135.311718 |
140.362613 |
-2.725225 |
1.070832e-11 |
|
|
|
| JN.1 |
17255 |
9 |
132.336765 |
134.689354 |
8.621291 |
3.673671e-14 |
|
|
|
| PG.6 |
23 |
50 |
131.523507 |
133.621942 |
10.756115 |
1.260100e-14 |
|
* |
|
| KP.3 |
769 |
48 |
126.270755 |
121.750348 |
34.499304 |
8.817178e-20 |
|
|
|
| XEC.2.2 |
273 |
60 |
124.191888 |
136.003953 |
5.992094 |
1.368351e-13 |
|
|
|
|
Target sequence
, 21_C|T, 44_C|T, 241_C|T, 515_520, 670_T|G, 897_C|A, 2060_G|A, 2585_2587, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5104_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A,
9344_C|T, 9365_C|T, 9424_A|G, 9534_C|T, 10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T,
15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T, 17934_C|A, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20914_A|C, 21641_G|T, 21653_T|C, 21711_C|T, 21765_21770, 21941_G|T, 21987_G|A,
21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T,
22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A,
22992_G|A, 22995_C|A, 23005_T|A, 23009_23011, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G,
23604_C|G, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 25592_A|G, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G,
26610_A|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28362_28370, 28600_T|C,
28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ288105
| Target: 27 samples | Number of changes: 136 | |
| BC: JN.1.16.1 + KP.3.3.10 | BC BR: 118-119 | BC BR coord: 27263 - 27264 |
| Direction L1: >> | Initial region span: 1-118,126-136 | Gap history (edge excluded): 118-126 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | - | |
| Rec. model vs L1: 4.61e-19 | Rec. model vs L2: 7.38e-42 | |
| Flags: Model_2BP_Bad_L1_opp | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
118 |
142.849571 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.3 |
1715 |
134 |
118.318237 |
112.080283 |
51.839433 |
4.332702e-14 |
|
|
|
| KP.3.1.1 |
12013 |
136 |
116.449369 |
111.651598 |
52.696805 |
2.818462e-14 |
|
|
|
| KP.3.1 |
1957 |
136 |
115.902597 |
108.292437 |
59.415126 |
9.790000e-16 |
|
|
|
| KP.2.3 |
4440 |
124 |
111.447986 |
101.980890 |
72.038220 |
1.779855e-18 |
|
|
|
| KP.2 |
1589 |
118 |
111.386318 |
111.386318 |
53.227365 |
2.162341e-14 |
|
* |
|
| JN.1 |
17255 |
118 |
109.687913 |
109.687913 |
56.624174 |
3.970041e-15 |
|
* |
|
| KP.3 |
769 |
118 |
106.659750 |
106.659750 |
62.680499 |
1.918151e-16 |
|
* |
|
| MC.24.1 |
25 |
134 |
106.139391 |
101.201324 |
73.597352 |
8.158960e-19 |
|
|
|
| JN.1.4 |
8971 |
118 |
105.217185 |
105.217185 |
65.565631 |
4.521965e-17 |
|
* |
|
| |||||
KP.3.3.10 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.3.3.10 |
55 |
126 |
21.649352 |
NaN |
NaN |
NaN |
* |
* |
* |
| XEC.2.2 |
273 |
126 |
18.939203 |
7.696525 |
26.606951 |
6.620495e-02 |
* |
* |
|
| KP.3.1 |
1957 |
120 |
17.610160 |
7.610160 |
26.779680 |
6.081006e-02 |
* |
|
|
| KP.3.1.1 |
12013 |
120 |
14.797771 |
4.797771 |
32.404458 |
3.661069e-03 |
* |
|
|
| KR.1.4 |
24 |
133 |
10.910774 |
-24.624117 |
91.248234 |
6.088255e-16 |
|
|
|
| XEK.2 |
67 |
126 |
8.820538 |
-2.418471 |
46.836942 |
2.679179e-06 |
|
* |
|
| MR.1 |
17 |
126 |
8.804789 |
-2.434219 |
46.868439 |
2.639292e-06 |
|
* |
|
| XEC.4.7 |
13 |
126 |
8.804789 |
-2.434219 |
46.868439 |
2.639292e-06 |
|
* |
|
| XEC.32 |
42 |
126 |
8.804789 |
-7.472002 |
56.944003 |
1.717175e-08 |
|
* |
|
| XEC.17 |
13 |
126 |
8.804789 |
-2.434219 |
46.868439 |
2.639292e-06 |
|
* |
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9344_C|T, 9365_C|T, 9424_A|G, 9430_C|T, 9534_C|T,
10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A, 16600_T|C, 17410_C|T,
18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 20168_A|C, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T, 22194_22196,
22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T, 22865_G|T,
22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C, 23039_C|G,
23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23629_T|C, 23854_C|A, 23948_G|T, 24378_C|T, 24424_A|T, 24469_T|A, 24872_G|T,
24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27259_A|C, 27321_A|G, 27382_G|C, 27383_A|T,
27384_T|C, 27807_C|T, 27810_T|C, 27828_C|T, 28271_A|T, 28291_C|A, 28311_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T, 29734_29759
Case 122 (XFN): OZ288128
| Target: 27 samples | Number of changes: 139 | |
| BC: JN.1.16.1 + KP.2.3 | BC BR: 44-45 | BC BR coord: 21653 - 21654 |
| Direction L1: << | Initial region span: 1-43,45-139 | Gap history (edge excluded): 43-45 |
| Alt. candidates: [], [] | | |
| Model 1BP/2BP comparison: | 1BP vs 2BP: 9.81e-07 | |
| Rec. model vs L1: 1.14e-42 | Rec. model vs L2: 1.43e-25 | |
| Flags: Model_1BP_Best | | |
JN.1.16.1 >>
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| JN.1.16.1 |
466 |
43 |
46.216326 |
NaN |
NaN |
NaN |
* |
* |
* |
| JN.1 |
17255 |
43 |
36.251832 |
17.494911 |
85.010178 |
1.259671e-10 |
|
* |
|
| XEC.25 |
13 |
36 |
30.934459 |
-7.590022 |
135.180043 |
1.606868e-21 |
|
|
|
| JN.1.7 |
1974 |
43 |
28.153578 |
10.423381 |
99.153238 |
1.071014e-13 |
|
* |
|
| XEC.17 |
13 |
36 |
27.463722 |
-11.541015 |
143.082029 |
3.093976e-23 |
|
|
|
| KP.3.1.1 |
12013 |
32 |
27.333999 |
-7.587713 |
135.175426 |
1.606868e-21 |
|
|
|
| KP.3.3 |
1715 |
36 |
27.043808 |
4.468359 |
111.063282 |
2.776973e-16 |
|
|
|
| XEC.39 |
155 |
36 |
25.899451 |
-12.579296 |
145.158593 |
1.093580e-23 |
|
|
|
| XEC.16 |
23 |
15 |
24.119754 |
-24.312403 |
168.624807 |
8.801901e-29 |
|
|
|
| XEC.18.3 |
13 |
15 |
24.119754 |
-32.642224 |
185.284448 |
2.122772e-32 |
|
|
|
| |||||
KP.2.3 <<
|
|
num_seq |
t_ch_MAX |
max_CL |
CL@BC_t_ch_MAX |
aic |
PV |
PV_OK |
t_ch_MAX_OK |
phyl_OK |
| KP.2.3 |
4440 |
45 |
131.390260 |
NaN |
NaN |
NaN |
* |
* |
* |
| KP.3.1.1 |
12013 |
45 |
124.322999 |
124.322999 |
-40.645999 |
8.544949e-04 |
* |
* |
|
| PG.3 |
31 |
45 |
114.960379 |
114.960379 |
-21.920757 |
7.320515e-08 |
|
* |
|
| KP.3 |
769 |
25 |
107.691914 |
93.532616 |
20.934768 |
3.628962e-17 |
|
|
|
| KP.3.1 |
1957 |
25 |
106.719037 |
103.805175 |
0.389649 |
1.047097e-12 |
|
|
|
| KP.3.3 |
1715 |
1 |
102.447114 |
97.978754 |
12.042491 |
3.091871e-15 |
|
|
|
| XEC.2.2 |
273 |
54 |
98.911785 |
91.998845 |
24.002310 |
7.818805e-18 |
|
|
|
| KP.2 |
1589 |
25 |
97.364066 |
93.601235 |
20.797529 |
3.872679e-17 |
|
|
|
| KP.3.3.10 |
55 |
25 |
97.331456 |
94.210473 |
19.579053 |
7.127400e-17 |
|
|
|
| KP.3.3.2 |
217 |
54 |
96.121273 |
94.976707 |
18.046586 |
1.531674e-16 |
|
|
|
|
Target sequence
, 241_C|T, 670_T|G, 897_C|A, 2060_G|A, 2790_C|T, 3037_C|T, 3431_G|T, 3565_T|C, 4184_G|A, 4321_C|T, 5577_T|C, 6183_A|G, 7842_A|G, 8293_C|T, 8393_G|A, 9322_T|C, 9344_C|T, 9365_C|T, 9424_A|G,
9430_C|T, 9534_C|T, 10029_C|T, 10198_C|T, 10228_C|T, 10447_G|A, 10449_C|A, 11042_G|T, 11288_11296, 11727_G|A, 12789_C|T, 12815_C|T, 12880_C|T, 13339_T|C, 14408_C|T, 15714_C|T, 15756_T|A,
16600_T|C, 17410_C|T, 18163_A|G, 18492_A|G, 18894_C|T, 19955_C|T, 20055_A|G, 21653_T|C, 21711_C|T, 21941_G|T, 21987_G|A, 21992_21994, 22032_T|C, 22033_C|A, 22034_A|G, 22107_A|G, 22132_G|T,
22194_22196, 22200_T|G, 22208_C|T, 22295_C|A, 22353_C|A, 22556_A|G, 22577_G|C, 22578_G|A, 22599_G|C, 22629_A|C, 22674_C|T, 22679_T|C, 22686_C|T, 22688_A|G, 22775_G|A, 22786_A|C, 22813_G|T,
22865_G|T, 22882_T|G, 22895_G|C, 22896_T|A, 22898_G|A, 22910_A|G, 22916_C|T, 22917_T|G, 22926_T|C, 22928_T|C, 22942_T|A, 22992_G|A, 22995_C|A, 23005_T|A, 23012_G|A, 23018_T|C, 23019_T|C,
23039_C|G, 23055_A|G, 23063_A|T, 23075_T|C, 23222_G|A, 23271_C|T, 23403_A|G, 23423_C|T, 23525_C|T, 23599_T|G, 23604_C|G, 23854_C|A, 23856_G|T, 23948_G|T, 24058_C|T, 24378_C|T, 24424_A|T,
24469_T|A, 24872_G|T, 24990_C|T, 25000_C|T, 25006_C|T, 25207_C|T, 25584_C|T, 26060_C|T, 26270_C|T, 26529_G|C, 26577_C|G, 26681_C|T, 26709_G|A, 26833_C|T, 26858_C|T, 27059_C|T, 27259_A|C,
27321_A|G, 27382_G|C, 27383_A|T, 27384_T|C, 27807_C|T, 27810_T|C, 28031_T|C, 28271_A|T, 28291_C|A, 28311_C|T, 28881_G|A, 28882_G|A, 28883_G|C, 28884_G|C, 28958_C|A, 29510_A|C, 29543_G|T,
29734_29759